TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440918.2.1
(1469 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 62 9e-037
gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Aven... 93 2e-035
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 59 5e-029
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 62.5 bits (130), Expect(5) = 9e-037
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +2 / +1
Query: 572 IPAPTMNFTQLLQSFQNKSLNLADLVWLSGAHTIGISQCNSFSERLY 712
+PAPT + QL +F K+L+ D+V LSGAHTIG +QC +F R+Y
Sbjct: 700 LPAPTSSLAQLQAAFSKKNLDTTDMVALSGAHTIGQAQCKNFRSRIY 840
Score = 51.5 bits (106), Expect(5) = 9e-037
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2 / +1
Query: 167 LKEGFYDYSCPQAEKIVKDYVKAHIPHAPDVASTLLRTHFHDCFV 301
L FYD SCP+A +K V A + + ++LLR HFHDCFV
Sbjct: 76 LSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 51.0 bits (105), Expect(5) = 9e-037
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2 / +3
Query: 377 TLRGFGFIDRIKALLEKECPGVVSCADIVALAARDSV 487
+LRGF ID IK +E C VSC DI+A+AARDSV
Sbjct: 399 SLRGFSVIDNIKTQVEAVCKQTVSCDDILAVAARDSV 509
Score = 34.1 bits (68), Expect(5) = 9e-037
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / +1
Query: 494 IGGPFWSVPTGRRDGT 541
+GGP W+VP GRRD T
Sbjct: 628 LGGPSWTVPLGRRDST 675
Score = 23.1 bits (44), Expect(5) = 9e-037
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 299 VRGCDASVLLN 331
++GCDASVLL+
Sbjct: 333 LQGCDASVLLS 365
>gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D04_H07, mRNA sequence
Length = 721
Score = 92.7 bits (196), Expect(2) = 2e-035
Identities = 45/111 (40%), Positives = 62/111 (55%)
Frame = +2 / +2
Query: 743 ADPSLDPLYAAKLRLKCKTLTDNTTIVEMDPGSFRTFDLSYYRGVLKRRGLFQSDAALIT 922
AD +LD YAA+LR C + + +D + FD Y++ +L RGL SD L+T
Sbjct: 212 ADSTLDVSYAAQLRQGCPRSGGDNNLFPLDVVTSTKFDNFYFKNILAGRGLLSSDEVLLT 391
Query: 923 DAASKADILSVINAPPEVFFQVFAGSMVKMGAIEVKTGSEGEIRKHCALVN 1075
+A A ++ +FFQ FA SMV MG I TGS+GEIRK+C +N
Sbjct: 392 KSAETAALVKAYADDVHLFFQHFAQSMVNMGNIMPLTGSKGEIRKNCRRLN 544
Score = 72.1 bits (151), Expect(2) = 2e-035
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2 / +2
Query: 524 GRRDGTVSIKQEALDQIPAPTMNFTQLLQSFQNKSLNLADLVWLSGAHTIGISQCNSFSE 703
G RD + Q + + IPAP ++ F+ LN+ D+V LSG HTIG+S+C SF +
Sbjct: 2 GTRDSLGASIQGSNNGIPAPNNTLPTIITKFKRLGLNVVDVVALSGGHTIGLSRCTSFRQ 181
Query: 704 RLYNFTGHGGPD 739
RLYN +G+G D
Sbjct: 182 RLYNQSGNGLAD 217
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 59.3 bits (123), Expect(4) = 5e-029
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +2 / +1
Query: 572 IPAPTMNFTQLLQSFQNKSLNLADLVWLSGAHTIGISQCNSFSERLY 712
+PAPT + QL +F K+L+ +V LSGAHTIG +QC +F R+Y
Sbjct: 706 LPAPTSSLAQLQAAFSKKNLDTTGMVALSGAHTIGQAQCKNFRSRIY 846
Score = 53.8 bits (111), Expect(4) = 5e-029
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2 / +3
Query: 377 TLRGFGFIDRIKALLEKECPGVVSCADIVALAARDSV 487
+LRGF ID IK +E C VSCADI+A+AARDSV
Sbjct: 399 SLRGFSVIDNIKTQVEAVCKQTVSCADILAVAARDSV 509
Score = 51.5 bits (106), Expect(4) = 5e-029
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2 / +1
Query: 167 LKEGFYDYSCPQAEKIVKDYVKAHIPHAPDVASTLLRTHFHDCFV 301
L FYD SCP+A +K V A + + ++LLR HFHDCFV
Sbjct: 76 LSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 23.1 bits (44), Expect(4) = 5e-029
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2 / +3
Query: 299 VRGCDASVLLN 331
++GCDASVLL+
Sbjct: 333 LQGCDASVLLS 365
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,462,740
Number of Sequences: 8143
Number of extensions: 154965
Number of successful extensions: 1221
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 533267088
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)