TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440570.2.2
(905 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817059.1|CN817059 HRO4527_G08_N15ZS5 Lib AA071E1X Aven... 101 2e-022
>gb|CN817059.1|CN817059 HRO4527_G08_N15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G08_N15, mRNA sequence
Length = 352
Score = 101 bits (215), Expect = 2e-022
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +2 / +2
Query: 527 VRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV* 649
VRHFGKAPGVPHSHTKPYVR+KGRKFEKARGRRNSRGFKV*
Sbjct: 2 VRHFGKAPGVPHSHTKPYVRAKGRKFEKARGRRNSRGFKV* 124
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,317,897
Number of Sequences: 8143
Number of extensions: 187228
Number of successful extensions: 1424
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 314073204
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)