TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Aven... 104 2e-044
>gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A11_A22, mRNA sequence
Length = 528
Score = 104 bits (221), Expect(2) = 2e-044
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +3 / +2
Query: 330 GRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEM 509
GRP SQL+GF+S HL A + A + F+VSPC+HFSRA EDG+KVID+GSHF+MV +DE E+
Sbjct: 155 GRPVSQLVGFRSQHLMAGEKASLRFDVSPCEHFSRAREDGKKVIDRGSHFLMVDKDESEI 334
Query: 510 SFMA*S 527
S *S
Sbjct: 335 SMET*S 352
Score = 89.5 bits (189), Expect(2) = 2e-044
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +3 / +2
Query: 183 ASYDVEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDG 326
ASY VE IG + C++LKFPA+V V NHGP+DGKHSVL+F+RWPN T G
Sbjct: 14 ASYYVEEIGVDGCEQLKFPAMVEVHNHGPLDGKHSVLMFLRWPNVTGG 157
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,138,767
Number of Sequences: 8143
Number of extensions: 53618
Number of successful extensions: 1415
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 169116378
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)