TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2437739.2.1
         (574 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820177.1|CN820177  HRO4412_A07_B14ZS5 Lib AA069E1X Aven...   114   6e-032
gb|CN816985.1|CN816985  HRO4527_A03_B05ZS5 Lib AA071E1X Aven...   106   8e-029

>gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4412_A07_B14, mRNA
           sequence
          Length = 675

 Score =  114 bits (243), Expect(2) = 6e-032
 Identities = 44/70 (62%), Positives = 51/70 (72%)
 Frame = +1 / +1

                                                                       
Query: 97  VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
           V+    L  + ALVAAWLPGSEG GITD +FGD+ F GTLP TWF+  DQ P+N GD  Y
Sbjct: 400 VIDPQVLEKIDALVAAWLPGSEGNGITDCIFGDHDFVGTLPVTWFRFSDQFPINIGDAKY 579

                     
Query: 277 DPLFPLGFGL 306
           DPLFP G+GL
Sbjct: 580 DPLFPFGYGL 609




 Score = 37.7 bits (76), Expect(2) = 6e-032
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1 / +1

                                              
Query: 7   NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQP 111
           +L+IP  G   I  V   VP   ++ISGRP+VI P
Sbjct: 307 DLSIPFNGSDLITRVASKVPTLVIVISGRPLVIDP 411



>gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_A03_B05, mRNA sequence
          Length = 608

 Score =  106 bits (227), Expect(2) = 8e-029
 Identities = 42/65 (64%), Positives = 49/65 (75%)
 Frame = +1 / +1

                                                                       
Query: 97  VVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHY 276
           V+ Q  +  + ALVAAWLPGSEG GITD +FGD+ F GTLP TWF+S DQLP+N GD  Y
Sbjct: 412 VIDQQVMEKIDALVAAWLPGSEGTGITDCIFGDHDFVGTLPVTWFRSSDQLPINIGDAKY 591

                
Query: 277 DPLFP 291
           D LFP
Sbjct: 592 DLLFP 606




 Score = 34.5 bits (69), Expect(2) = 8e-029
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1 / +1

                                            
Query: 7   NLTIPEPGPSTIQTVCGAVPCATVLISGRPVVI 105
           +L+IP  G   I  V   VP   ++ISGRP+VI
Sbjct: 319 DLSIPFNGSDLITRVASKVPTLVIVISGRPLVI 417



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,764,908
Number of Sequences: 8143
Number of extensions: 72694
Number of successful extensions: 1511
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 181371188
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)