TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2437629.2.1
         (1264 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820087.1|CN820087  HRO4410_H10_O20ZS5 Lib AA069E1X Aven...   177   3e-045

>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
           sequence
          Length = 657

 Score =  177 bits (381), Expect(2) = 3e-045
 Identities = 74/81 (91%), Positives = 80/81 (98%)
 Frame = -1 / +1

                                                                       
Query: 808 TSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMP 629
           TS VVLQTDKGDEELCSVYVPTNHLYIGDIFL+NS+EIIRPNLSIREGIEIIVSGGMTMP
Sbjct: 19  TSNVVLQTDKGDEELCSVYVPTNHLYIGDIFLLNSDEIIRPNLSIREGIEIIVSGGMTMP 198

                                
Query: 628 QVIASLEPMPRKSQNIRLNRM 566
           QVIASLEP+P+KSQ+IRLNR+
Sbjct: 199 QVIASLEPIPKKSQSIRLNRI 261




 Score =  149 bits (319), Expect(2) = 3e-038
 Identities = 67/79 (84%), Positives = 70/79 (88%)
 Frame = +3 / -2

                                                                       
Query: 573 FRRMFWLFRGMGSSDAIT*GMVIPPDTIISIPSRMDKLGLMISSEFTRNMSPMYR*FVGT 752
           F RM WLF GMGSSDAIT GMVIPPDTIISIPSRMDK GLMISS F+RN+SP+YR*FVGT
Sbjct: 254 FSRMLWLFFGMGSSDAITCGMVIPPDTIISIPSRMDKFGLMISSLFSRNISPIYR*FVGT 75

                              
Query: 753 YTLHSSSSPLSV*RTTVDV 809
            TL SSSSPLSV*RTT DV
Sbjct: 74  *TLQSSSSPLSV*RTTFDV 18




 Score = 28.1 bits (55), Expect(2) = 3e-038
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1 / -1

                       
Query: 379 IPGHQHDASLQY 414
           IPGH+HDA++Q+
Sbjct: 438 IPGHRHDATIQF 403




 Score = 23.5 bits (45), Expect(2) = 3e-045
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2 / +1

                         
Query: 411 LQGSIVLMPWDNLL 370
           L GSI+ MPW+ ++
Sbjct: 406 LDGSIMSMPWNTII 447



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14,877,738
Number of Sequences: 8143
Number of extensions: 228842
Number of successful extensions: 1354
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 454657320
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)