TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 123 1e-033
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 123 bits (263), Expect(2) = 1e-033
Identities = 49/100 (49%), Positives = 62/100 (62%)
Frame = -3 / +3
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 87 ALLEDEANHGTFDFVFVDADKDNYLNYHQRLMKLVRVGGLLGYDNTLWNGSVVLPADAPM 266
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRR 253
R + + ELN L+ D RVE+CQL + DG+T+CRR
Sbjct: 267 RKYIRYYRDFVLELNKALAADDRVEICQLPVGDGITLCRR 386
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 24 EKAGVAHKIDFREGPALPVLD 86
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,716,675
Number of Sequences: 8143
Number of extensions: 72251
Number of successful extensions: 3773
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 199753403
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)