TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419405.2.4
         (582 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...   163   3e-041

>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score =  163 bits (350), Expect = 3e-041
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = -2 / +1

                                                                       
Query: 560 YLAVLVEFEDGDGDVVQVDLMEANSGSWTPMRESWGSIWRLDSGHRLAAPFSLRITNESG 381
           YLAVL+E+ED DGD+ QVD+ EANS SW PMRESWGSIWR+DS HRL APFS+RIT++SG
Sbjct: 1   YLAVLIEYEDMDGDLTQVDMKEANSRSWAPMRESWGSIWRMDSNHRLQAPFSMRITSDSG 180

                                    
Query: 380 KTLVANQVIPANWVPNTYYRSIIQY 306
           K LVAN +IPANW PNT YRS +Q+
Sbjct: 181 KQLVANNIIPANWRPNTDYRSFVQF 255




 Score =  100 bits (212), Expect = 3e-022
 Identities = 46/63 (73%), Positives = 47/63 (74%)
 Frame = +1 / -2

                                                                       
Query: 310 WMMER**VLGTQLAGMTWLATSVLPDSLVMRREKGAARRWPESSRQMDPHDSRIGVHDPE 489
           W  ER* VLG QLAGM  LATS LP+SLVMR E GA RRW ES  QMDP DSRIG HD E
Sbjct: 251 WTKER*SVLGLQLAGMMLLATSCLPESLVMRMENGAWRRWLESILQMDPQDSRIGAHDRE 72

              
Query: 490 LAS 498
           LAS
Sbjct: 71  LAS 63




 Score = 97.3 bits (206), Expect = 2e-021
 Identities = 42/73 (57%), Positives = 46/73 (63%)
 Frame = +3 / -1

                                                                       
Query: 342 PVGRDDLVGHQRLAGLVGDAQGEGRGEAVAGVQPPDGPPRLAHRRPRPGVGXXXXXXXXX 521
           PVG DD+VG + LAG+ GDA GE R EAV GV PPDGPP LAHRRPRP VG         
Sbjct: 219 PVGWDDVVGDELLAGVAGDAHGEWRLEAVVGVHPPDGPPGLAHRRPRPRVGLLHVHLRQV 40

                        
Query: 522 XXXXXXXDEHRQV 560
                  D+HRQV
Sbjct: 39  AVHVLVLDQHRQV 1



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,274,564
Number of Sequences: 8143
Number of extensions: 97377
Number of successful extensions: 2710
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 185047631
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)