TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419405.2.3
         (1600 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...   128   5e-037
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score =  128 bits (274), Expect(2) = 5e-037
 Identities = 46/59 (77%), Positives = 54/59 (91%)
 Frame = -3 / +1

                                                                      
Query: 839 WTPMRESWGSVWRMDTNHRMQPPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQYS 663
           W PMRESWGS+WRMD+NHR+Q PFS+RI ++SGK LVANN+IPANWRPNT YRSFVQ+S
Sbjct: 82  WAPMRESWGSIWRMDSNHRLQAPFSMRITSDSGKQLVANNIIPANWRPNTDYRSFVQFS 258

 Score = 42.3 bits (86), Expect(2) = 5e-037
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -3 / +1

                                         
Query: 938 YFAVLVEYEDGDGDVVQVDLMESKTARGPP 849
           Y AVL+EYED DGD+ QVD+ E+ +    P
Sbjct: 1   YLAVLIEYEDMDGDLTQVDMKEANSRSWAP 90
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14,636,987
Number of Sequences: 8143
Number of extensions: 192201
Number of successful extensions: 1052
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 584912324
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)