TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418946.2.2
         (710 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...   248   4e-069
gb|CN821039.1|CN821039  HRO4422_H02_O04ZS5 Lib AA069E1X Aven...   120   2e-028
>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score =  248 bits (535), Expect(2) = 4e-069
 Identities = 102/159 (64%), Positives = 124/159 (77%)
 Frame = +3 / +3

                                                                       
Query: 63  DNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIA 242
           D++S+LVY FSW+VI   L +MK +SVGRRRF A FQL FRLIK +IF+ F A++V+LI 
Sbjct: 201 DDKSILVYLFSWLVILGALFIMKVISVGRRRFGASFQLFFRLIKFMIFVAFAAVLVVLIL 380

                                                                       
Query: 243 IPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFT 422
           I  MT+ DIFVCILAF+PTGWG+     A RPV+   GLWGS++ALAR YE++MG+LLFT
Sbjct: 381 ILHMTIRDIFVCILAFLPTGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFT 560

                                                  
Query: 423 PIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKK 539
           PI  L+   FVSEFQTRMLFNQAFS GLQISRI  G K+
Sbjct: 561 PITVLSWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKE 677

 Score =  131 bits (280), Expect = 2e-031
 Identities = 69/158 (43%), Positives = 82/158 (51%)
 Frame = -2 / -2

                                                                       
Query: 529 PXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXXXXALIEPQSPV 350
           P  IREI  PLLNA LNSI VWNS+T     R  MGV              A  +P SP 
Sbjct: 667 PPRIREI*SPLLNA*LNSIRVWNSETKGNHDRTVMGVKSSTPMITSYARARARTDPHSPA 488

                                                                       
Query: 349 LWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSW 170
              TG  A  I   PHPVG  ARMQTN+S  VM  ++I  T+ A N  NI   I+R  S 
Sbjct: 487 TRRTGLQACAISSIPHPVGKNARMQTNISRIVM*RMSINTTSTAANATNIMNFISRKNS* 308

                                                 
Query: 169 NSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLV 56
             A NL  PTD  FI +   +IT+HE + T  L  S++
Sbjct: 307 KLAPNLRRPTDITFIINNAPRITSHENKYTKILLSSVI 194

 Score = 28.6 bits (56), Expect(2) = 4e-069
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3 / +3

                      
Query: 15  RYGLVYHLNIT 47
           +YGLVYHLNIT
Sbjct: 168 QYGLVYHLNIT 200
>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
           sequence
          Length = 700

 Score =  120 bits (257), Expect = 2e-028
 Identities = 52/123 (42%), Positives = 72/123 (58%)
 Frame = +3 / +2

                                                                       
Query: 171 QLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHK 350
           +LVFR IK L F+      ++L  +  ++++D+ +C LAF+PTGWGL      +RP I  
Sbjct: 8   RLVFRFIKLLTFLAVVTSFILLTCLCKLSIMDLIICCLAFIPTGWGLLLIVQVLRPKIEY 187

                                                                       
Query: 351 TGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXG 530
             +W  I+ +A  Y+  MG LLF PIA LA    +S  QTR+LFN+AFS  LQI     G
Sbjct: 188 YAIWEPIQVIAHAYDYGMGSLLFFPIAILAWMPIISAIQTRVLFNRAFSRQLQIQPFIVG 367

              
Query: 531 HKK 539
             K
Sbjct: 368 KTK 376
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,209,613
Number of Sequences: 8143
Number of extensions: 81154
Number of successful extensions: 853
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 234946234
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)