TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418946.2.1
         (690 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...   193   3e-050
gb|CN821039.1|CN821039  HRO4422_H02_O04ZS5 Lib AA069E1X Aven...   127   2e-030

>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score =  193 bits (416), Expect = 3e-050
 Identities = 76/96 (79%), Positives = 87/96 (90%)
 Frame = +1 / +3

                                                                       
Query: 49  MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
           MT+ DIFVCILAF+PTGWG+LLIAQA RPV+   GLWGS++ALAR YE++MG+LLFTPI 
Sbjct: 390 MTIRDIFVCILAFLPTGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFTPIT 569

                                               
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKK 336
            L+WFPFVSEFQTRMLFNQAFSRGLQISRILGG K+
Sbjct: 570 VLSWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKE 677




 Score =  106 bits (227), Expect = 3e-024
 Identities = 52/93 (55%), Positives = 55/93 (59%)
 Frame = -2 / -2

                                                                       
Query: 326 PPRIREICRPLLNAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIEPQSPV 147
           PPRIREI  PLLNA LNSI VWNS+T GN  R  MGV              A  +P SP 
Sbjct: 667 PPRIREI*SPLLNA*LNSIRVWNSETKGNHDRTVMGVKSSTPMITSYARARARTDPHSPA 488

                                            
Query: 146 LWITGRIAWAISSKPHPVGMKARMQTNMSSTVM 48
              TG  A AISS PHPVG  ARMQTN+S  VM
Sbjct: 487 TRRTGLQACAISSIPHPVGKNARMQTNISRIVM 389



>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
           sequence
          Length = 700

 Score =  127 bits (272), Expect = 2e-030
 Identities = 50/96 (52%), Positives = 66/96 (68%)
 Frame = +1 / +2

                                                                       
Query: 49  MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
           ++++D+ +C LAF+PTGWGLLLI Q +RP I    +W  I+ +A  Y+  MG LLF PIA
Sbjct: 89  LSIMDLIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIA 268

                                               
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKK 336
            LAW P +S  QTR+LFN+AFSR LQI   + G  K
Sbjct: 269 ILAWMPIISAIQTRVLFNRAFSRQLQIQPFIVGKTK 376



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,885,046
Number of Sequences: 8143
Number of extensions: 114255
Number of successful extensions: 1129
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 229164947
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)