TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 199 2e-053
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 199 bits (428), Expect(2) = 2e-053
Identities = 79/110 (71%), Positives = 92/110 (83%)
Frame = +3 / +1
Query: 210 DAEREPSVFSRITKFEEELRAVLPQXXXXXXXXXXXGTAPVANRIADSRSFPLYRFVRQE 389
+AE E +VFS+ITKFEEELR+ LP+ GTAP+ N I +SRSFPLYRFVR+E
Sbjct: 7 EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186
Query: 390 LGCVFLTGEKLKSPGEECNKVFLGISQGKLVDPMLECLKEWDGKPLPINI 539
LGCV+LTGEKL SPGEECNKVFLGISQGKL+DPMLECLKEW+G+PLPIN+
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPINV 336
Score = 155 bits (332), Expect = 1e-038
Identities = 71/109 (65%), Positives = 72/109 (66%)
Frame = -3 / -1
Query: 535 LMGSGLPSHSLRHSSMGSTSLPWLMPRNTLLHSSPGDLSFSPVRNTQPSSWRTKRYSGNE 356
LMG G P HSLRHSSMGS SLPWLMPRNTLLHSSPGD SFSPVR TQPSS RTKRYSG +
Sbjct: 332 LMGRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTKRYSGKD 153
Query: 355 RLSAIRLATGAVPXXXXXXXXXXXXXXXXXXXXSNLVILEKTEGSRSAS 209
LS IR GAVP SNLVILE T S SAS
Sbjct: 152 LLSLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6
Score = 113 bits (241), Expect(2) = 2e-027
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = +2 / +3
Query: 362 PAVPLRAPGARLRVPHRREAQVPRRGVQQGVPRHQPGQARRPHARVPQGVGRQAAAHQ 535
PAVPLR GA LRVPHRRE VPRRGVQQGVP HQPGQA RPHA VPQGV R+A AHQ
Sbjct: 159 PAVPLRPRGAGLRVPHRRETPVPRRGVQQGVPGHQPGQAHRPHAGVPQGVERRAPAHQ 332
Score = 27.6 bits (54), Expect(2) = 2e-053
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +3
Query: 802 *DPILLYFGVNYILRDQF 855
*D +LLYFG+ Y+L D F
Sbjct: 567 *DIVLLYFGLKYMLLDCF 620
Score = 26.7 bits (52), Expect(2) = 2e-027
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 803 KILYCCILG*TTSYVI 850
KIL CCILG*+ Y I
Sbjct: 568 KILSCCILG*SICYSI 615
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,205,834
Number of Sequences: 8143
Number of extensions: 93779
Number of successful extensions: 990
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 305551838
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)