TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 397 e-111
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 397 e-111
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 296 4e-081
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 397 bits (862), Expect = e-111
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = -3 / +3
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVLV+N+DVLAGP+VSLAYPLYASVRAIETKS++DDQQWLTYWVLYSFITLFELTFA
Sbjct: 60 SFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFA 239
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRP 532
V+EWLPFWSY KLFFNCWLVLP FNGAAHVYEHFVRPMIVNQQVVNIWYIPKK++S +P
Sbjct: 240 AVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKEDSDKP 419
Query: 531 DDVISAAQRYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRARIQLESEAREVNPFF 352
DDVISAAQ+YIEQNGSKAFE LVNKFK+SN RRSILEEVEVERRAR + E EAR+VNPFF
Sbjct: 420 DDVISAAQKYIEQNGSKAFEALVNKFKTSNARRSILEEVEVERRARAEREFEARDVNPFF 599
Query: 351 NPEY 340
P Y
Sbjct: 600 QPNY 611
Score = 300 bits (650), Expect = 2e-082
Identities = 133/181 (73%), Positives = 138/181 (76%)
Frame = +2 / -1
Query: 347 GLKKGFXXXXXXXXXXXXXXXXXXXXRIERLGFELLNLLTRFSNAFDPFCSMYLCAAEIT 526
G K GF +IERL FE+LNLLTR SNAFDPFCSMY CAAEIT
Sbjct: 604 GWKNGFTSLASNSLSALALLSTSTSSKIERLAFEVLNLLTRASNAFDPFCSMYFCAAEIT 425
Query: 527 SSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSS 706
SSGL +SSF GIYQMFTTC FTIIG TKCS TCAAPL G TNQQLKNSF *DQKGSHS
Sbjct: 424 SSGLSESSFLGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKTNQQLKNSFP*DQKGSHSI 245
Query: 707 TGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALTEAYRGYASETKGPARTSMLLTKTLR 886
T AKVSSNRVINEY+TQYVSHC*SS DFVSIA T+AYRG ASET GPARTS LLT TLR
Sbjct: 244 TAAKVSSNRVINEYNTQYVSHC*SSIEDFVSIARTDAYRG*ASETMGPARTSRLLTSTLR 65
Query: 887 K 889
K
Sbjct: 64 K 62
Score = 263 bits (568), Expect = 5e-071
Identities = 120/185 (64%), Positives = 140/185 (75%)
Frame = +1 / -3
Query: 340 IFWIEERVHFPRFRF*LNPGPPFNLYLLQN*APWVRTLKLVNKILKRF*SILLNVPLCS* 519
+ W+EE +H PRF F +PG PF+LYLLQN*A + +LKLV++ LK F*SIL V LCS*
Sbjct: 611 VIWLEEWIHIPRFEFSFSPGSPFHLYLLQN*ASCI*SLKLVDQSLKCF*SILFYVFLCS* 432
Query: 520 NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYMCSSIELWQY*PAIEEQLCIRPERKP 699
NYI+ * LL NIPDVY LL++NHWPHKMLI M S+IE+ Q PAIE+QL IRPE KP
Sbjct: 431 NYIVGFI*IFLLGNIPDVYYLLVHNHWPHKMLINMRSTIEVGQDQPAIEKQLSIRPEGKP 252
Query: 700 FEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK*NQRPREDIHVVDQD 879
F Y SKG+L+ SDK VQHPV EPLLII+ RFCF CSNR I RI +*N PRE+I V DQ
Sbjct: 251 FYYCSKGKLKQSDKRVQHPVCEPLLIIYRRFCFYCSNRRI*RISE*NYGPRENIEVADQH 72
Query: 880 LEERS 894
LEE S
Sbjct: 71 LEEGS 57
Score = 237 bits (511), Expect = 4e-063
Identities = 110/191 (57%), Positives = 128/191 (67%)
Frame = -2 / +2
Query: 892 IFPQGLGQQHGCPRGAFGFTXXXXXXXXXXXXNKICCG*SAMAHVLGAVLIYHSIRAHLC 713
I PQG GQQ C RGA FT NKI *SAMAH+LG VL+YHS+ A+LC
Sbjct: 59 ILPQGAGQQPRCSRGAHSFTRLSSICVCSSNRNKIFYR*SAMAHILGVVLVYHSV*AYLC 238
Query: 712 SGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFCEANDCKSASCKHLVYSKEG*IK*T 533
RMAS LVL KAV QLLV +A +QW C C+*AFC ANDC+ AS KHLVYS+EG +*T
Sbjct: 239 CSNRMASLLVLWKAVFQLLVGLALLQWCCACL*AFCAANDCEPASSKHLVYSQEGRFR*T 418
Query: 532 **CNFSCTEVH*AKWIKSV*ESC*QV*EFEPKALNSGGGRG*KEGQDSTRI*SEGSEPFL 353
CNFSCTE+H KWIKS+* S QV*+F+ K LN GGGRG KE Q RI SEG E L
Sbjct: 419 RRCNFSCTEIHRTKWIKSI*GSGQQV*DFKCKTLNFGGGRGGKESQG*KRIRSEGCESIL 598
Query: 352 QSRISVLGNHF 320
+++ L + F
Sbjct: 599 PTKLLTL*SSF 631
Score = 195 bits (420), Expect = 1e-050
Identities = 96/162 (59%), Positives = 109/162 (67%)
Frame = +3 / -2
Query: 354 RKGSLPSLQILVESWPSFQPLPPPELSALGSNS*TC*QDSQTLLIHFAQCTSVQLKLHHQ 533
R S PSL+IL + W SF PLPPP+LS L S*TC* + Q LLIHF C SVQLKLH +
Sbjct: 597 RMDSHPSLRILFQPWLSFPPLPPPKLSVLHLKS*TC*PEPQMLLIHFVLCISVQLKLHRR 418
Query: 534 VYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQLH*TVAILTSN*RTALHKTRKEAIRVPE 713
VYL PS EYTRC NAH H Q H*+ A TSN*+TA HKTR+EAI + +
Sbjct: 417 VYLNLPSWEYTRCLLLAGSQSLAAQNAHKHAQHH*SRARPTSN*KTAFHKTRREAILLLQ 238
Query: 714 QR*ARIE**MSTAPST*AIADHPQQILFQLL*QRHTEDTQVK 839
QR*A+ E** ST PS *AIADH +ILF LL Q H ED +VK
Sbjct: 237 QR*AQTE**TSTTPSM*AIADHL*KILFLLLEQTHIEDKRVK 112
Score = 155 bits (332), Expect(2) = 1e-048
Identities = 78/119 (65%), Positives = 87/119 (73%)
Frame = -1 / +1
Query: 701 NGFLSGLMQSCSSIAG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQVDLMM* 522
NGF SGLM+SC SIAG C +SM L M+MSIL GQ*L* SK *TSGIF RR Q++ M*
Sbjct: 250 NGFPSGLMESCFSIAGWSCPTSMVLRMFMSILCGQ*L*TSK**TSGIFPRRKIQINPTM* 429
Query: 521 FQLHRGTLSKMDQKRLRILLTSLRVRTQGAQFWRR*RLKGGPGFN*NLKRGK*TLSSIQ 345
FQLHR T +KMDQK LR+ TSLR++ Q AQFWRR*R KG PG N KRG * SS Q
Sbjct: 430 FQLHRNT*NKMDQKHLRLWSTSLRLQMQDAQFWRR*RWKGEPGLKENSKRGM*IHSSNQ 606
Score = 54.2 bits (112), Expect(2) = 1e-048
Identities = 24/32 (75%), Positives = 24/32 (75%)
Frame = -1 / +1
Query: 839 FHLRILCMPLLEQLKQNLLWMISNGSRTGCCT 744
FH IL M L EQ KQNLL MISNGS TGCCT
Sbjct: 112 FHSLILYMRLFEQ*KQNLL*MISNGSHTGCCT 207
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 397 bits (862), Expect = e-111
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = -3 / +3
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVLV+N+DVLAGP+VSLAYPLYASVRAIETKS++DDQQWLTYWVLYSFITLFELTFA
Sbjct: 54 SFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFA 233
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRP 532
V+EWLPFWSY KLFFNCWLVLP FNGAAHVYEHFVRPMIVNQQVVNIWYIPKK++S +P
Sbjct: 234 AVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKEDSDKP 413
Query: 531 DDVISAAQRYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRARIQLESEAREVNPFF 352
DDVISAAQ+YIEQNGSKAFE LVNKFK+SN RRSILEEVEVERRAR + E EAR+VNPFF
Sbjct: 414 DDVISAAQKYIEQNGSKAFEALVNKFKTSNARRSILEEVEVERRARAEREFEARDVNPFF 593
Query: 351 NPEY 340
P Y
Sbjct: 594 QPNY 605
Score = 300 bits (650), Expect = 2e-082
Identities = 133/181 (73%), Positives = 138/181 (76%)
Frame = +2 / -2
Query: 347 GLKKGFXXXXXXXXXXXXXXXXXXXXRIERLGFELLNLLTRFSNAFDPFCSMYLCAAEIT 526
G K GF +IERL FE+LNLLTR SNAFDPFCSMY CAAEIT
Sbjct: 598 GWKNGFTSLASNSLSALALLSTSTSSKIERLAFEVLNLLTRASNAFDPFCSMYFCAAEIT 419
Query: 527 SSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSS 706
SSGL +SSF GIYQMFTTC FTIIG TKCS TCAAPL G TNQQLKNSF *DQKGSHS
Sbjct: 418 SSGLSESSFLGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKTNQQLKNSFP*DQKGSHSI 239
Query: 707 TGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALTEAYRGYASETKGPARTSMLLTKTLR 886
T AKVSSNRVINEY+TQYVSHC*SS DFVSIA T+AYRG ASET GPARTS LLT TLR
Sbjct: 238 TAAKVSSNRVINEYNTQYVSHC*SSIEDFVSIARTDAYRG*ASETMGPARTSRLLTSTLR 59
Query: 887 K 889
K
Sbjct: 58 K 56
Score = 263 bits (568), Expect = 5e-071
Identities = 120/185 (64%), Positives = 140/185 (75%)
Frame = +1 / -1
Query: 340 IFWIEERVHFPRFRF*LNPGPPFNLYLLQN*APWVRTLKLVNKILKRF*SILLNVPLCS* 519
+ W+EE +H PRF F +PG PF+LYLLQN*A + +LKLV++ LK F*SIL V LCS*
Sbjct: 605 VIWLEEWIHIPRFEFSFSPGSPFHLYLLQN*ASCI*SLKLVDQSLKCF*SILFYVFLCS* 426
Query: 520 NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYMCSSIELWQY*PAIEEQLCIRPERKP 699
NYI+ * LL NIPDVY LL++NHWPHKMLI M S+IE+ Q PAIE+QL IRPE KP
Sbjct: 425 NYIVGFI*IFLLGNIPDVYYLLVHNHWPHKMLINMRSTIEVGQDQPAIEKQLSIRPEGKP 246
Query: 700 FEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK*NQRPREDIHVVDQD 879
F Y SKG+L+ SDK VQHPV EPLLII+ RFCF CSNR I RI +*N PRE+I V DQ
Sbjct: 245 FYYCSKGKLKQSDKRVQHPVCEPLLIIYRRFCFYCSNRRI*RISE*NYGPRENIEVADQH 66
Query: 880 LEERS 894
LEE S
Sbjct: 65 LEEGS 51
Score = 237 bits (511), Expect = 4e-063
Identities = 110/191 (57%), Positives = 128/191 (67%)
Frame = -2 / +2
Query: 892 IFPQGLGQQHGCPRGAFGFTXXXXXXXXXXXXNKICCG*SAMAHVLGAVLIYHSIRAHLC 713
I PQG GQQ C RGA FT NKI *SAMAH+LG VL+YHS+ A+LC
Sbjct: 53 ILPQGAGQQPRCSRGAHSFTRLSSICVCSSNRNKIFYR*SAMAHILGVVLVYHSV*AYLC 232
Query: 712 SGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFCEANDCKSASCKHLVYSKEG*IK*T 533
RMAS LVL KAV QLLV +A +QW C C+*AFC ANDC+ AS KHLVYS+EG +*T
Sbjct: 233 CSNRMASLLVLWKAVFQLLVGLALLQWCCACL*AFCAANDCEPASSKHLVYSQEGRFR*T 412
Query: 532 **CNFSCTEVH*AKWIKSV*ESC*QV*EFEPKALNSGGGRG*KEGQDSTRI*SEGSEPFL 353
CNFSCTE+H KWIKS+* S QV*+F+ K LN GGGRG KE Q RI SEG E L
Sbjct: 413 RRCNFSCTEIHRTKWIKSI*GSGQQV*DFKCKTLNFGGGRGGKESQG*KRIRSEGCESIL 592
Query: 352 QSRISVLGNHF 320
+++ L + F
Sbjct: 593 PTKLLTL*SSF 625
Score = 195 bits (420), Expect = 1e-050
Identities = 96/162 (59%), Positives = 109/162 (67%)
Frame = +3 / -3
Query: 354 RKGSLPSLQILVESWPSFQPLPPPELSALGSNS*TC*QDSQTLLIHFAQCTSVQLKLHHQ 533
R S PSL+IL + W SF PLPPP+LS L S*TC* + Q LLIHF C SVQLKLH +
Sbjct: 591 RMDSHPSLRILFQPWLSFPPLPPPKLSVLHLKS*TC*PEPQMLLIHFVLCISVQLKLHRR 412
Query: 534 VYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQLH*TVAILTSN*RTALHKTRKEAIRVPE 713
VYL PS EYTRC NAH H Q H*+ A TSN*+TA HKTR+EAI + +
Sbjct: 411 VYLNLPSWEYTRCLLLAGSQSLAAQNAHKHAQHH*SRARPTSN*KTAFHKTRREAILLLQ 232
Query: 714 QR*ARIE**MSTAPST*AIADHPQQILFQLL*QRHTEDTQVK 839
QR*A+ E** ST PS *AIADH +ILF LL Q H ED +VK
Sbjct: 231 QR*AQTE**TSTTPSM*AIADHL*KILFLLLEQTHIEDKRVK 106
Score = 155 bits (332), Expect(2) = 1e-048
Identities = 78/119 (65%), Positives = 87/119 (73%)
Frame = -1 / +1
Query: 701 NGFLSGLMQSCSSIAG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQVDLMM* 522
NGF SGLM+SC SIAG C +SM L M+MSIL GQ*L* SK *TSGIF RR Q++ M*
Sbjct: 244 NGFPSGLMESCFSIAGWSCPTSMVLRMFMSILCGQ*L*TSK**TSGIFPRRKIQINPTM* 423
Query: 521 FQLHRGTLSKMDQKRLRILLTSLRVRTQGAQFWRR*RLKGGPGFN*NLKRGK*TLSSIQ 345
FQLHR T +KMDQK LR+ TSLR++ Q AQFWRR*R KG PG N KRG * SS Q
Sbjct: 424 FQLHRNT*NKMDQKHLRLWSTSLRLQMQDAQFWRR*RWKGEPGLKENSKRGM*IHSSNQ 600
Score = 54.2 bits (112), Expect(2) = 1e-048
Identities = 24/32 (75%), Positives = 24/32 (75%)
Frame = -1 / +1
Query: 839 FHLRILCMPLLEQLKQNLLWMISNGSRTGCCT 744
FH IL M L EQ KQNLL MISNGS TGCCT
Sbjct: 106 FHSLILYMRLFEQ*KQNLL*MISNGSHTGCCT 201
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 296 bits (641), Expect = 4e-081
Identities = 117/157 (74%), Positives = 135/157 (85%)
Frame = -3 / +1
Query: 867 NMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEWLPF 688
N D+LAGPLVSLAYPLYASVRAIETKS VDDQQWLTYWVLYSFITLFELTFAP+LEWLPF
Sbjct: 16 NFDILAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPF 195
Query: 687 WSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRPDDVISAAQ 508
W Y KLFFNCWLVLP FNGAA+VYEHFVRPM +N+Q+VNIWY+P+KD+SS+PDDV+SAA+
Sbjct: 196 WPYGKLFFNCWLVLPCFNGAAYVYEHFVRPMFLNRQIVNIWYVPRKDKSSKPDDVLSAAE 375
Query: 507 RYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRA 397
+YIE NG +AFE L++K + RS V E +A
Sbjct: 376 KYIELNGPEAFEKLISKSTKPSNFRSKRLSVLQEAKA 486
Score = 211 bits (455), Expect = 2e-055
Identities = 100/142 (70%), Positives = 108/142 (76%)
Frame = +2 / -3
Query: 452 LNLLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTCAA 631
++LL FSNA PF S+Y AAE TSSGLLD SF G YQMFT F IG TKCS T AA
Sbjct: 431 VDLLISFSNASGPFSSIYFSAAESTSSGLLDLSFLGTYQMFTIWRFKNIGRTKCS*T*AA 252
Query: 632 PLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALT 811
PL G T+QQLKN+F * QKGSHSS GA VSSN+VINEY+TQ VSHC*SST DFVSIALT
Sbjct: 251 PLKQGKTSQQLKNNFP*GQKGSHSSIGANVSSNKVINEYNTQ*VSHC*SST*DFVSIALT 72
Query: 812 EAYRGYASETKGPARTSMLLTK 877
EAYRG ASET GPAR S L +
Sbjct: 71 EAYRG*ASETSGPARMSKFLPR 6
Score = 197 bits (425), Expect = 3e-051
Identities = 91/142 (64%), Positives = 105/142 (73%)
Frame = +1 / -2
Query: 445 RTLKLVNKILKRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYM 624
R +L N +LK F SI N+ LCS* YIIR T* IL W++PDVY L I HWPHKML+ +
Sbjct: 438 RLCRLAN*LLKCFWSIQFNILLCS*EYIIRFT*LILSWDVPDVYYLAIQKHWPHKMLVNI 259
Query: 625 CSSIELWQY*PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNC 804
S+IE *PAIEEQL I PERKPF+Y SK EL+ SDK*VQHPV EPLLII+ RFCFNC
Sbjct: 258 SSTIEAR*N*PAIEEQLSIGPERKPFKYWSKCELKQSDK*VQHPVSEPLLIIYLRFCFNC 79
Query: 805 SNRGIQRIRK*NQRPREDIHVV 870
S+RGI RI K N P ED+ V+
Sbjct: 78 SHRGI*RISKRN*WPGEDVEVL 13
Score = 147 bits (316), Expect = 3e-036
Identities = 67/113 (59%), Positives = 82/113 (72%)
Frame = -2 / +3
Query: 793 KICCG*SAMAHVLGAVLIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI* 614
KI *SA+AH+LG VLIYH + AH+CS T MASFL L K VLQLL S +QW C C+
Sbjct: 90 KISSR*SAVAHLLGVVLIYHFV*AHICSNT*MASFLALWKVVLQLLASFTLLQWCCLCLR 269
Query: 613 AFCEANDCKSASCKHLVYSKEG*IK*T**CNFSCTEVH*AKWIKSV*ESC*QV 455
AFC AN +S + KHLV K+G*+K*T**C SC EV+* +W +S+*E+ *QV
Sbjct: 270 AFCAANVFESPNSKHLVRPKKG*VK*T**CTLSCREVY*TEWTRSI*EAN*QV 428
Score = 147 bits (315), Expect = 4e-036
Identities = 73/129 (56%), Positives = 84/129 (65%)
Frame = +3 / -1
Query: 453 *TC*QDSQTLLIHFAQCTSVQLKLHHQVYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQL 632
*TC* SQ LL+H Q TS+QL++HHQVYL +P L TRC NA H Q
Sbjct: 430 *TC*LASQMLLVHSVQYTSLQLRVHHQVYLTYPFLGRTRCLLFGDSKTLAAQNARKHKQH 251
Query: 633 H*TVAILTSN*RTALHKTRKEAIRVPEQR*ARIE**MSTAPST*AIADHPQQILFQLL*Q 812
H*+ L SN*RT H+ RKEAI+V EQ *A+ +**MST PS *A ADH +ILFQLL Q
Sbjct: 250 H*SKVKLASN*RTTFHRARKEAIQVLEQM*AQTK**MSTTPSK*ATADHLLEILFQLLSQ 71
Query: 813 RHTEDTQVK 839
RH ED Q K
Sbjct: 70 RHIEDKQAK 44
Score = 144 bits (309), Expect = 3e-035
Identities = 76/130 (58%), Positives = 87/130 (66%)
Frame = -1 / +2
Query: 839 FHLRILCMPLLEQLKQNLLWMISNGSRTGCCTHXXXXXXXXXXXXSNGFLSGLMQSCSSI 660
F L IL MPL EQLKQNL MIS+GS TGCCTH NGFLSG M+SCSSI
Sbjct: 44 FRLLILYMPL*EQLKQNLK*MISSGSLTGCCTHLSLCLSSHLLQYLNGFLSGPMESCSSI 223
Query: 659 AG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQVDLMM*FQLHRGTLSKMDQK 480
AG*+ +SM L M+ SIL GQ *I+K *TSG Q R++QV+LMM QL R L+ MDQK
Sbjct: 224 AG*FYLASMVLLMFTSILCGQCF*IAK**TSGTSQERISQVNLMMYSQLQRSILN*MDQK 403
Query: 479 RLRILLTSLR 450
LR L SL+
Sbjct: 404 HLRS*LASLQ 433
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,719,709
Number of Sequences: 8143
Number of extensions: 186191
Number of successful extensions: 979
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 405080325
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)