TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1738978.2.1
         (572 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821192.1|CN821192  HRO4428_E07_J14ZS5 Lib AA069E1X Aven...   107   1e-024
>gb|CN821192.1|CN821192 HRO4428_E07_J14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_E07_J14, mRNA
           sequence
          Length = 586

 Score =  107 bits (229), Expect = 1e-024
 Identities = 39/67 (58%), Positives = 50/67 (74%)
 Frame = -3 / +2

                                                                       
Query: 489 CNAGQLAACAPAITAGARPSASCCSNLKAQQGCFCQFVKNPTYGRYINSPNARKVVASCG 310
           C+A  L ACA  I  G+ PSASCCSNL++Q+GCFCQ+ +NP Y  YI S NARK +A+C 
Sbjct: 158 CDASNLVACAGPIVTGSTPSASCCSNLRSQRGCFCQYARNPAYAGYIKSANARKTLATCH 337

                  
Query: 309 VSVPRC* 289
           V++P C*
Sbjct: 338 VALPSC* 358
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,601,141
Number of Sequences: 8143
Number of extensions: 88456
Number of successful extensions: 1984
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 181371188
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)