TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.5
(1999 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 104 6e-043
gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Aven... 104 7e-023
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 104 bits (222), Expect(3) = 6e-043
Identities = 41/96 (42%), Positives = 58/96 (60%)
Frame = -2 / +1
Query: 810 KLQTEVRTTMRSPDGKKLDMLAEEDLGSMPYLKATIKETLRLHPPAPFLLPHYSTADSEI 631
++ +V+ +R GK ++ DLG + Y++ IKE LRLHPP P LLP + D EI
Sbjct: 85 EVMAKVQKEVREVLGKDQVVITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEI 264
Query: 630 DGYFVPAGTRVLVNAWALGRDRTTWEKPEEFMPERF 523
GY +P GT + +NA+A+ D W+ P EF PERF
Sbjct: 265 MGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERF 372
Score = 78.0 bits (164), Expect(3) = 6e-043
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -2 / +1
Query: 501 DVHMKGKDLRFIPFGSGRRICPGMNFGFATMEIMLANLMYHFDWEVP 361
+V+ G +F PFGSGRRICPG+ F +T+EI LANL+YHFDW++P
Sbjct: 382 NVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLP 522
Score = 26.3 bits (51), Expect(3) = 6e-043
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 345 VSMDESFGLTLRRKEKLLLV 286
V M E FG+T+RRK L LV
Sbjct: 535 VDMLEKFGITVRRKFDLQLV 594
>gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_D10_H20, mRNA
sequence
Length = 379
Score = 104 bits (221), Expect = 7e-023
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -2 / +3
Query: 468 IPFGSGRRICPGMNFGFATMEIMLANLMYHFDWEVPGSAAGVSMDESFGLTLRRKEKLLL 289
+PFGSGRRICPG+NF +E+MLANL+YHFDWE+P V M E F L++RRKEKL L
Sbjct: 3 VPFGSGRRICPGINFANVAVEMMLANLVYHFDWELPAEKKEVDMKEVFSLSIRRKEKLHL 182
Query: 288 VP 283
VP
Sbjct: 183 VP 188
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 18,862,550
Number of Sequences: 8143
Number of extensions: 270253
Number of successful extensions: 2217
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 744652240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)