TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.1
(724 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 147 2e-036
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 147 bits (316), Expect = 2e-036
Identities = 58/110 (52%), Positives = 85/110 (77%)
Frame = +3 / +3
Query: 165 YFNEDGLLYIVDRLKELIKYKGYQVPPAELEHILNSHPDIMDAAVIPYPDEDAGQLPMAF 344
+ ++D ++IVDRLKE+IKYKG+QV PAELE +L +HPDI DAAV+ D+ G++P+AF
Sbjct: 18 FVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPDIKDAAVVGVKDDLCGEVPVAF 197
Query: 345 IVRKPGSNLTEQQVMDFVAKQVAPYKKVRRVAFVSAIPKSPAGKILRREL 494
I R GS +TE ++ FV+K+V YK++ +V F +IPK+P+GKILR++L
Sbjct: 198 IKRIEGSEITENEIKQFVSKEVVFYKRINKVYFTDSIPKNPSGKILRKDL 347
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,916,341
Number of Sequences: 8143
Number of extensions: 104230
Number of successful extensions: 897
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 239815586
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)