TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716286.2.1
(1104 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Aven... 171 2e-043
gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Aven... 151 2e-037
gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Aven... 149 6e-037
gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Aven... 142 1e-034
gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Aven... 127 3e-030
gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Aven... 126 6e-030
gb|CN815849.1|CN815849 HRO4511_B08_D15ZS5 Lib AA071E1X Aven... 118 2e-027
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 115 1e-026
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 115 1e-026
gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Aven... 114 2e-026
gb|CN820944.1|CN820944 HRO4421_G05_M09ZS5 Lib AA069E1X Aven... 114 2e-026
gb|CN817131.1|CN817131 HRO4528_E12_J24ZS5 Lib AA071E1X Aven... 79 2e-026
gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Aven... 111 2e-025
gb|CN815167.1|CN815167 HRO4506_F04_K08ZS5 Lib AA071E1X Aven... 107 4e-024
gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Aven... 98 2e-021
gb|CN818122.1|CN818122 HRO4471_F01_K01ZS5 Lib AA070E1X Aven... 98 2e-021
>gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F05_L09, mRNA
sequence
Length = 648
Score = 171 bits (368), Expect = 2e-043
Identities = 69/142 (48%), Positives = 94/142 (66%)
Frame = -3 / -2
Query: 937 IKETQRLLSEPAPGISASPSEENMRYFNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPK 758
+KE + L +P SA P E+M ++ I+GP+ SPY GGVF + + P +YP PK
Sbjct: 647 LKELKDLQRDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPK 468
Query: 757 VRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKH 578
V F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA
Sbjct: 467 VAFKTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 288
Query: 577 WKSNEVEAVETAKEWTRLYASG 512
+K++ + TA+ WT+ YA G
Sbjct: 287 YKADRTKYESTARSWTQKYAMG 222
>gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_C11_E21, mRNA
sequence
Length = 657
Score = 151 bits (325), Expect = 2e-037
Identities = 61/112 (54%), Positives = 78/112 (69%)
Frame = -3 / +3
Query: 847 ILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPA 668
I+GP SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPA
Sbjct: 30 IMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPA 209
Query: 667 LQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKEWTRLYASG 512
L I VLLSI +LL+ PNPDDPL IA +K++ + TA+ WT+ YA G
Sbjct: 210 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 365
>gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H05_O09, mRNA sequence
Length = 624
Score = 149 bits (321), Expect = 6e-037
Identities = 63/118 (53%), Positives = 77/118 (65%)
Frame = -3 / +2
Query: 841 GPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQ 662
G SPY GG+F + + P +YP PKV F TK+YHPNI+ G ICLDILK++WSPAL
Sbjct: 2 GTRDSPYAGGIFFVNIHFPPDYPFKPPKVNFETKVYHPNINSNGSICLDILKEQWSPALT 181
Query: 661 IRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKEWTRLYASGA*ERSAVL 488
I VLLSI +LL+ PNPDDPL IA +K+ ETA WT+ YA G * R V+
Sbjct: 182 ISKVLLSISSLLTDPNPDDPLVPEIAHLYKNQRTRYEETASAWTQKYAMG**VRVPVI 355
>gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E09_J18, mRNA
sequence
Length = 592
Score = 142 bits (304), Expect = 1e-034
Identities = 56/107 (52%), Positives = 75/107 (70%)
Frame = -3 / +2
Query: 832 QSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRT 653
+SP+ GG+F + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I
Sbjct: 8 RSPFTGGLFLVNIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISK 187
Query: 652 VLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKEWTRLYASG 512
VLLSI +LL+ PNPDDPL IA +K++ + TA+ WT+ YA G
Sbjct: 188 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 328
>gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G07_M14, mRNA sequence
Length = 532
Score = 127 bits (272), Expect = 3e-030
Identities = 51/93 (54%), Positives = 66/93 (70%)
Frame = -3 / +1
Query: 790 LPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 611
+P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ PNP
Sbjct: 10 VPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 189
Query: 610 DDPLSDNIAKHWKSNEVEAVETAKEWTRLYASG 512
DDPL IA +K++ + TA+ WT+ YA G
Sbjct: 190 DDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 288
>gb|CN816654.1|CN816654 HRO4523_C06_F11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_C06_F11, mRNA sequence
Length = 821
Score = 126 bits (270), Expect = 6e-030
Identities = 48/119 (40%), Positives = 75/119 (63%)
Frame = -3 / -2
Query: 892 SASPSEENMRYFNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 713
S +P + N+ +N +I GP +P++GG FKL L E+YP P VRF+++++HPNI
Sbjct: 616 SGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 437
Query: 712 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKE 536
G ICLDIL+++WSP + +L S+Q+LL PNP+ P + A+ + N+ E +E
Sbjct: 436 GSICLDILQNQWSPIYDVAAILTSVQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 260
>gb|CN815849.1|CN815849 HRO4511_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B08_D15, mRNA sequence
Length = 620
Score = 118 bits (252), Expect = 2e-027
Identities = 45/108 (41%), Positives = 69/108 (63%)
Frame = -3 / +3
Query: 859 FNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK 680
+N +I GP +P++GG FKL L E+YP P VRF+++++HPNI G ICLDIL+++
Sbjct: 12 WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ 191
Query: 679 WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKE 536
WSP + +L S+Q+LL PNP+ P + A+ + N+ E +E
Sbjct: 192 WSPIYDVAAILTSVQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 335
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 115 bits (246), Expect = 1e-026
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = -3 / +2
Query: 763 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 584
PKV F TK++HPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL IA
Sbjct: 35 PKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 214
Query: 583 KHWKSNEVEAVETAKEWTRLYA 518
+K++ + TA+ WT+ YA
Sbjct: 215 HMYKTDRHKYESTARTWTQRYA 280
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 115 bits (246), Expect = 1e-026
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = -3 / +1
Query: 763 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 584
PKV F TK++HPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL IA
Sbjct: 31 PKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 210
Query: 583 KHWKSNEVEAVETAKEWTRLYA 518
+K++ + TA+ WT+ YA
Sbjct: 211 HMYKTDRHKYESTARTWTQRYA 276
>gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_F10_L20, mRNA sequence
Length = 508
Score = 114 bits (244), Expect = 2e-026
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = -3 / +2
Query: 760 KVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 581
KV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA
Sbjct: 2 KVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 181
Query: 580 HWKSNEVEAVETAKEWTRLYASG 512
+K++ + TA+ WT+ YA G
Sbjct: 182 MYKTDRAKYESTARSWTQKYAMG 250
>gb|CN820944.1|CN820944 HRO4421_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G05_M09, mRNA
sequence
Length = 745
Score = 114 bits (244), Expect = 2e-026
Identities = 45/108 (41%), Positives = 68/108 (62%)
Frame = -3 / +1
Query: 859 FNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK 680
+N +I GP +P++GG FKL L E+YP P VRF+++++H NI G ICLDIL+++
Sbjct: 7 WNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHSNIYADGSICLDILQNQ 186
Query: 679 WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKE 536
WSP + +L SIQ+LL PNP+ P + A+ + N+ E +E
Sbjct: 187 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRKVRE 330
>gb|CN817131.1|CN817131 HRO4528_E12_J24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_E12_J24, mRNA sequence
Length = 726
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 28/60 (46%), Positives = 43/60 (71%)
Frame = -3 / +2
Query: 901 PGISASPSEENMRYFNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 722
P I + N+ + +I GP+++P+EGGVF+L +PE+YP+ P+VRFLTKI+HPN+
Sbjct: 80 PDIQLICDDSNIFKWTALIKGPSETPFEGGVFQLAFSIPEQYPLLPPQVRFLTKIFHPNV 259
Score = 54.7 bits (113), Expect(2) = 2e-026
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -3 / +2
Query: 718 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVET 545
K G ICLDILK+ WSPA +++V +I AL++ P D PL+ + +S ++ ++
Sbjct: 266 KTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEADSPLNCDSGNLLRSGDIRGYQS 439
>gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D09_G17, mRNA sequence
Length = 564
Score = 111 bits (238), Expect = 2e-025
Identities = 49/88 (55%), Positives = 59/88 (67%)
Frame = -3 / +3
Query: 751 FLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWK 572
F K+YHPNI+ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA +K
Sbjct: 15 F*NKVYHPNINSNGSICLDILKEQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 194
Query: 571 SNEVEAVETAKEWTRLYASGA*ERSAVL 488
+ ETA WT+ YA G * R V+
Sbjct: 195 NQRTRYEETASAWTQKYAMG**VRVPVI 278
>gb|CN815167.1|CN815167 HRO4506_F04_K08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F04_K08, mRNA sequence
Length = 552
Score = 107 bits (228), Expect = 4e-024
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = -3 / +2
Query: 829 SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTV 650
+P++GG FKL L E+YP P VRF+++++HPNI G ICLDIL+++WSP + +
Sbjct: 26 TPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAI 205
Query: 649 LLSIQALLSAPNPDDPLSDNIAKHWKSNEVEAVETAKE 536
L SIQ+LL PNP+ P + A+ + N+ E +E
Sbjct: 206 LTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVRE 319
>gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A02_A03, mRNA sequence
Length = 641
Score = 98.2 bits (208), Expect = 2e-021
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = -3 / +2
Query: 760 KVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAK 581
+V F TK++HPN++ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA
Sbjct: 416 QVAFKTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH 595
Query: 580 HWKSNEVEAVETAK 539
+K++ + TA+
Sbjct: 596 MYKADRTKYESTAR 637
>gb|CN818122.1|CN818122 HRO4471_F01_K01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_F01_K01, mRNA sequence
Length = 650
Score = 98.2 bits (208), Expect = 2e-021
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = -3 / +2
Query: 844 LGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPAL 665
L P + Y GG F + YP APKV+ TK+YHPNID G +CL+IL++ W P L
Sbjct: 359 LRPDEGYYLGGAFTFTFQVSASYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVL 538
Query: 664 QIRTVLLSIQALLSAPNPDDPLSDNIA 584
I T++ + L S PN +DPL+ A
Sbjct: 539 NINTIIYGLNLLFSQPNDEDPLNHEAA 619
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,096,192
Number of Sequences: 8143
Number of extensions: 205733
Number of successful extensions: 1276
Number of sequences better than 1.0e-020: 16
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 390569985
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)