TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Aven... 155 9e-039
>gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_B02_C04, mRNA sequence
Length = 687
Score = 155 bits (334), Expect = 9e-039
Identities = 58/67 (86%), Positives = 62/67 (92%)
Frame = -2 / -1
Query: 462 RSSTVKIYCPKCEELNYPRSKYQGNIDGSYFGTTFPHLFLMTYSHLKPQKPSQQYTPRVF 283
RSS VKIYCPKCE+L YPRSKYQ NIDG+YFGTTFPHL+LMTY HLKPQKPSQ+Y PRVF
Sbjct: 687 RSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLYLMTYPHLKPQKPSQEYVPRVF 508
Query: 282 GFKLHKP 262
GFKLHKP
Sbjct: 507 GFKLHKP 487
Score = 105 bits (224), Expect = 1e-023
Identities = 49/66 (74%), Positives = 52/66 (78%)
Frame = +2 / +2
Query: 263 GL*SLKPKTLGVYCCDGFCGFKCE*VIRKR*GNVVPKYDPSMLPWYLDLG*LSSSHFGQY 442
GL*SL PKTLG Y CDGF GFKC VIR +*GNVVPK PSML YLDLG* SSHFGQ
Sbjct: 488 GL*SLNPKTLGTYSCDGFWGFKCGYVIRYK*GNVVPK*APSMLL*YLDLG**RSSHFGQ* 667
Query: 443 IFTVLD 460
IFT+L+
Sbjct: 668 IFTLLE 685
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,307,760
Number of Sequences: 8143
Number of extensions: 196063
Number of successful extensions: 1023
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 409917105
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)