TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131612.2.1
         (620 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...   185   5e-048
gb|CN821039.1|CN821039  HRO4422_H02_O04ZS5 Lib AA069E1X Aven...   122   5e-029

>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score =  185 bits (399), Expect = 5e-048
 Identities = 73/91 (80%), Positives = 84/91 (92%)
 Frame = +3 / +3

                                                                       
Query: 3   IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
           IFVCILAF+PTGWG+LLIAQA RPV++  GLWGS++ALAR YE++MG+LLFTPI  L+WF
Sbjct: 405 IFVCILAFLPTGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFTPITVLSWF 584

                                          
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKK 275
           PFVSEFQTRMLFNQAFSRGLQISRILGG K+
Sbjct: 585 PFVSEFQTRMLFNQAFSRGLQISRILGGQKE 677




 Score =  100 bits (214), Expect = 2e-022
 Identities = 49/88 (55%), Positives = 51/88 (57%)
 Frame = -2 / -2

                                                                       
Query: 265 PPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIDPHSPI 86
           PPRIREI  PLL A LNSI VWNS+T GN  R  MGV              A  DPHSP 
Sbjct: 667 PPRIREI*SPLLNA*LNSIRVWNSETKGNHDRTVMGVKSSTPMITSYARARARTDPHSPA 488

                                       
Query: 85  F*ITGLIAWAIRSKPHPVGMKARMQTKM 2
              TGL A AI S PHPVG  ARMQT +
Sbjct: 487 TRRTGLQACAISSIPHPVGKNARMQTNI 404



>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
           sequence
          Length = 700

 Score =  122 bits (261), Expect = 5e-029
 Identities = 49/91 (53%), Positives = 62/91 (68%)
 Frame = +3 / +2

                                                                       
Query: 3   IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
           + +C LAF+PTGWGLLLI Q +RP I+   +W  I+ +A  Y+  MG LLF PIA LAW 
Sbjct: 104 LIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAILAWM 283

                                          
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKK 275
           P +S  QTR+LFN+AFSR LQI   + G  K
Sbjct: 284 PIISAIQTRVLFNRAFSRQLQIQPFIVGKTK 376



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,657,636
Number of Sequences: 8143
Number of extensions: 118415
Number of successful extensions: 2182
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 200978884
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)