TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.78
(943 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 99 3e-025
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 98.7 bits (209), Expect(2) = 3e-025
Identities = 41/49 (83%), Positives = 47/49 (95%)
Frame = -2 / +3
Query: 729 KIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNEAQS 583
+II DRET RSRGFGFVTFS+E++MR+AIEGMNGK+LDGRNITVNEAQS
Sbjct: 12 QIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKDLDGRNITVNEAQS 158
Score = 34.1 bits (68), Expect(2) = 3e-025
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 399 NSDGNWRN*AVGPARPSYP 343
+S GNWRN* VGP SYP
Sbjct: 342 DSGGNWRN*MVGPLVASYP 398
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,873,205
Number of Sequences: 8143
Number of extensions: 87467
Number of successful extensions: 692
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 328681260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)