TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.76
(854 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815230.1|CN815230 HRO4507_C12_F23ZS5 Lib AA071E1X Aven... 290 3e-079
gb|CN814901.1|CN814901 HRO4503_G03_N05ZS5 Lib AA071E1X Aven... 179 6e-046
emb|X69422.1|AFTETUBI A.fatua mRNA for tetraubiquitin 179 6e-046
gb|CN816060.1|CN816060 HRO4516_D11_H22ZS5 Lib AA071E1X Aven... 168 1e-042
gb|CN818740.1|CN818740 HRO4468_B09_C18ZS5 Lib AA070E1X Aven... 152 6e-038
gb|CN814878.1|CN814878 HRO4503_E02_J03ZS5 Lib AA071E1X Aven... 135 1e-032
gb|CN816023.1|CN816023 HRO4516_A09_B18ZS5 Lib AA071E1X Aven... 124 2e-029
gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Aven... 121 2e-028
gb|CN821651.1|CN821651 HRO4408_F11_L22Z Lib AA069E1X Avena ... 108 1e-024
>gb|CN815230.1|CN815230 HRO4507_C12_F23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C12_F23, mRNA sequence
Length = 568
Score = 290 bits (627), Expect = 3e-079
Identities = 122/126 (96%), Positives = 124/126 (98%)
Frame = -2 / +3
Query: 718 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 539
LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL
Sbjct: 3 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 182
Query: 538 HLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRAKKKI 359
HLVLRLRGGIIEPSLQALARKYNQ+KMICRKCYARLHPRAVNCRKKKCGHSNQLR KKKI
Sbjct: 183 HLVLRLRGGIIEPSLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 362
Query: 358 KN*GAA 341
KN* A+
Sbjct: 363 KN*SAS 380
Score = 225 bits (486), Expect = 7e-060
Identities = 95/121 (78%), Positives = 96/121 (79%)
Frame = +3 / -1
Query: 354 FLIFFLALSWLL*PHFFLRQLTALGCSRA*HLRQIILSWLYLRASACREGSMIPPRSLST 533
FLIFFL LSWLL PHFFLRQLTALGC RA*HLRQII SWLYLRASA REGSM+PPRSL T
Sbjct: 367 FLIFFLGLSWLLWPHFFLRQLTALGCRRA*HLRQIIFSWLYLRASAWREGSMMPPRSLRT 188
Query: 534 RWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXXXXXXXXFP 713
RW VDSFWML*SARVRPSSSC PAKI RCWSGGIPSLSWILA FP
Sbjct: 187 RWRVDSFWML*SARVRPSSSCLPAKIRRCWSGGIPSLSWILALTLSMVSLLSTSRVMVFP 8
Query: 714 V 716
V
Sbjct: 7 V 5
Score = 213 bits (460), Expect = 3e-056
Identities = 86/118 (72%), Positives = 97/118 (82%)
Frame = -1 / +2
Query: 698 PRGREQRHHRQCQGQDPGQGRDPAGPAAADLCREAAGGWPHPCGL*HPKGVYAPPRA*AP 519
PRGREQR+HRQCQG DPGQG +PAGPAA+DL +AAGGWP+PCGL HP+GV+ P R AP
Sbjct: 23 PRGREQRYHRQCQG*DPGQGGNPAGPAASDLRWQAAGGWPYPCGLQHPEGVHPPSRPQAP 202
Query: 518 RWNH*ALSAGARSQVQPGQDDLPQMLCTTAP*GCQLPQEEVWSQQPAEGQEEDQELRC 345
+H AL GAR QV PG+DDLPQ+LCT+AP G QLPQEEVW QQPAE QEEDQEL C
Sbjct: 203 WRHHRALPPGARPQV*PGEDDLPQVLCTSAPQGRQLPQEEVWPQQPAEAQEEDQELEC 376
Score = 152 bits (327), Expect = 6e-038
Identities = 70/122 (57%), Positives = 81/122 (66%)
Frame = +2 / -3
Query: 347 TSVLDLLLGPQXXXXXXXXXXXXDSPRVQSCIAFAADHLVLVVLASERLQRGLNDSTAEP 526
T VLDLLLGPQ D P VQ+CIA AADHL+LV+LA ERL+ GL+D++ EP
Sbjct: 374 TLVLDLLLGPQLVAVATLLLAAVDGPGVQTCIALAADHLLLVILAGERLEGGLDDASTEP 195
Query: 527 KHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVRRDPFXXXXXXXXXXXXXAALDLEGDG 706
+ E+E LLLDV+VRKG AILQLL +DQ LLVRRD AALDLEGDG
Sbjct: 194 EDEMEGGLLLDVVVRKGTAILQLLASEDQTLLVRRDSLLVLDLSLDIVDGIAALDLEGDG 15
Query: 707 LP 712
LP
Sbjct: 14 LP 9
Score = 88.1 bits (186), Expect(3) = 2e-033
Identities = 36/56 (64%), Positives = 39/56 (69%)
Frame = +1 / -2
Query: 343 QHLXXXXXXWPSAGCCDHTSSCGS*QP*GAVVHSICGRSSCPGCTCERAPAERAQ* 510
+H W SAGCC HTSSCGS*+P GA VHS CGRSS PG TC RAP RA+*
Sbjct: 378 RHSSS*SSSWASAGCCGHTSSCGS*RPWGADVHSTCGRSSSPGYTCGRAPGGRAR* 211
Score = 58.3 bits (121), Expect(3) = 2e-033
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGS P*HCRW RCSRPRG*W
Sbjct: 81 PCPGS*P*HCRWYRCSRPRG*W 16
Score = 29.0 bits (57), Expect(3) = 2e-033
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 547 TPFGCYSPQGCGH 585
TP GC SPQG GH
Sbjct: 174 TPSGCCSPQGYGH 136
>gb|CN814901.1|CN814901 HRO4503_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G03_N05, mRNA sequence
Length = 675
Score = 179 bits (385), Expect = 6e-046
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -2 / +1
Query: 742 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 563
KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY
Sbjct: 58 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 237
Query: 562 NIQKESTLHLVLRLRGGI 509
NIQKESTLHLVLRLRGG+
Sbjct: 238 NIQKESTLHLVLRLRGGM 291
Score = 176 bits (379), Expect = 4e-045
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2 / +1
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 289 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 468
Query: 559 IQKESTLHLVLRLRGG 512
IQKESTLHLVLRLRGG
Sbjct: 469 IQKESTLHLVLRLRGG 516
Score = 127 bits (273), Expect = 2e-030
Identities = 52/78 (66%), Positives = 55/78 (70%)
Frame = +3 / -2
Query: 510 IPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXX 689
+PPR STRW VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 290 MPPRRRSTRWRVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILALTLSMVSDDS 111
Query: 690 XXXXXXFPVSVFTKICIL 743
PV VFTKICIL
Sbjct: 110 TSRVMVLPVRVFTKICIL 57
Score = 113 bits (241), Expect = 4e-026
Identities = 47/76 (61%), Positives = 51/76 (67%)
Frame = +3 / -2
Query: 513 PPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXXX 692
PPR ST+ VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 515 PPRRRSTK*RVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILALTLSMVSDDST 336
Query: 693 XXXXXFPVSVFTKICI 740
PV V TKIC+
Sbjct: 335 SRVMVLPVRVLTKICM 288
Score = 58.8 bits (122), Expect(3) = 3e-026
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +2 / -1
Query: 512 STAEPKHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVRRD 634
++ + +H+VE LLLDV+V KG A+L+LL GKD+ LLVRRD
Sbjct: 288 ASTKAEHQVEGGLLLDVVVSKGTAVLKLLAGKDEALLVRRD 166
Score = 57.0 bits (118), Expect(3) = 3e-026
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +1 / -3
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGSWP* CRWC+ +RP+G*W
Sbjct: 160 PCPGSWP*RCRWCQTTRPQG*W 95
Score = 55.1 bits (114), Expect(3) = 3e-022
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +1 / -3
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGSWP* C+WC+ +RP+G*W
Sbjct: 388 PCPGSWP*RCQWCQMTRPQG*W 323
Score = 52.4 bits (108), Expect(3) = 3e-022
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +2 / -1
Query: 512 STAEPKHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVRRD 634
+T E +H+V+ LLLDV+V +GAAIL+LL +D+ LLVR D
Sbjct: 516 ATTETEHQVKGGLLLDVVVCQGAAILKLLASEDEALLVRGD 394
Score = 35.4 bits (71), Expect(3) = 3e-026
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / -1
Query: 686 LDLEGDGLPCQRLHEDLHLVGPGRS 760
LDL+GDGL + LH+DLHL RS
Sbjct: 114 LDLKGDGLASEGLHKDLHLERRTRS 40
Score = 29.9 bits (59), Expect(3) = 3e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 686 LDLEGDGLPCQRLHEDLH 739
LDL+GDGL + L EDLH
Sbjct: 342 LDLKGDGLAGEGLDEDLH 289
>emb|X69422.1|AFTETUBI A.fatua mRNA for tetraubiquitin
Length = 1196
Score = 179 bits (385), Expect = 6e-046
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = -2 / +3
Query: 742 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 563
KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY
Sbjct: 30 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 209
Query: 562 NIQKESTLHLVLRLRGGI 509
NIQKESTLHLVLRLRGG+
Sbjct: 210 NIQKESTLHLVLRLRGGM 263
Score = 177 bits (380), Expect = 3e-045
Identities = 76/77 (98%), Positives = 77/77 (100%)
Frame = -2 / +3
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 489 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 668
Query: 559 IQKESTLHLVLRLRGGI 509
IQKESTLHLVLRLRGG+
Sbjct: 669 IQKESTLHLVLRLRGGM 719
Score = 177 bits (380), Expect = 3e-045
Identities = 76/77 (98%), Positives = 77/77 (100%)
Frame = -2 / +3
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 261 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
Query: 559 IQKESTLHLVLRLRGGI 509
IQKESTLHLVLRLRGG+
Sbjct: 441 IQKESTLHLVLRLRGGM 491
Score = 176 bits (379), Expect = 4e-045
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2 / +3
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 717 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 896
Query: 559 IQKESTLHLVLRLRGG 512
IQKESTLHLVLRLRGG
Sbjct: 897 IQKESTLHLVLRLRGG 944
Score = 122 bits (262), Expect = 6e-029
Identities = 49/77 (63%), Positives = 53/77 (68%)
Frame = +3 / -2
Query: 510 IPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXX 689
+PPR STRW VDSFWML*SARVRPSSSCFPAK+ RCWSGG+PSLSWI A
Sbjct: 718 MPPRRRSTRWRVDSFWML*SARVRPSSSCFPAKMRRCWSGGMPSLSWIFAFTLSIVSEDS 539
Query: 690 XXXXXXFPVSVFTKICI 740
PV V TKIC+
Sbjct: 538 TSRVMVLPVRVLTKICM 488
Score = 122 bits (260), Expect = 1e-028
Identities = 49/77 (63%), Positives = 53/77 (68%)
Frame = +3 / -2
Query: 510 IPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXX 689
+PPR ST+W VDSFWML*SARVRPSSSC PAKI RCWSGG+PSLSWILA
Sbjct: 490 MPPRRRSTKWRVDSFWML*SARVRPSSSCLPAKIRRCWSGGMPSLSWILAFTLSMVSDDS 311
Query: 690 XXXXXXFPVSVFTKICI 740
PV V TKIC+
Sbjct: 310 TSRVMVLPVRVLTKICM 260
Score = 117 bits (250), Expect = 3e-027
Identities = 49/78 (62%), Positives = 52/78 (66%)
Frame = +3 / -2
Query: 510 IPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXX 689
+PPR STRW VDSFWML*SARVRPSSSC PA + RC SGG+PSLSWI A
Sbjct: 262 MPPRRRSTRWRVDSFWML*SARVRPSSSCLPANMRRC*SGGMPSLSWIFALTLSMVSEDS 83
Query: 690 XXXXXXFPVSVFTKICIL 743
PV VFTKICIL
Sbjct: 82 TSSVMVLPVRVFTKICIL 29
Score = 116 bits (247), Expect = 7e-027
Identities = 49/80 (61%), Positives = 53/80 (66%)
Frame = +3 / -2
Query: 501 GSMIPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXX 680
G+ PPR STR VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 955 GTYWPPRRRSTR*RVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILAFTLSMVS 776
Query: 681 XXXXXXXXXFPVSVFTKICI 740
PV V TKIC+
Sbjct: 775 DDSTSKVMVLPVRVLTKICM 716
Score = 99.1 bits (210), Expect = 8e-022
Identities = 36/55 (65%), Positives = 41/55 (74%)
Frame = -1 / +2
Query: 677 HHRQCQGQDPGQGRDPAGPAAADLCREAAGGWPHPCGL*HPKGVYAPPRA*APRW 513
HH QC+GQDPGQG P GPAA LCR+AA GWPHPC L HP+GV+ P A +P W
Sbjct: 779 HH*QCEGQDPGQGGHPPGPAAPHLCRQAARGWPHPCRLQHPEGVHPSPGAPSPWW 943
Score = 97.3 bits (206), Expect = 3e-021
Identities = 37/56 (66%), Positives = 41/56 (73%)
Frame = -1 / +2
Query: 677 HHRQCQGQDPGQGRDPAGPAAADLCREAAGGWPHPCGL*HPKGVYAPPRA*APRWN 510
HH QC+GQDPGQG GPAA DLC AA GWPHPCGL HP+GV+ P A PRW+
Sbjct: 323 HH*QCEGQDPGQGGHSPGPAAPDLCW*AA*GWPHPCGLQHPEGVHPPLGAPPPRWH 490
Score = 62.9 bits (131), Expect(3) = 3e-024
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2 / -1
Query: 512 STAEPKHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVR 628
+TAE +H+VE LLLDV+VRKGAAIL+LL KDQ LLVR
Sbjct: 488 ATAEAEHQVEGGLLLDVVVRKGAAILKLLTSKDQALLVR 372
Score = 59.7 bits (124), Expect(3) = 9e-022
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / -1
Query: 512 STAEPKHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVRRD 634
+T E +H+V+ LLLDV+V KGAAIL+LL GKD+ LLVR D
Sbjct: 944 ATTETEHQVKGGLLLDVVVGKGAAILELLAGKDEALLVRGD 822
Score = 58.8 bits (122), Expect(3) = 8e-023
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2 / -1
Query: 512 STAEPKHEVERRLLLDVIVRKGAAILQLLPGKDQPLLVRRDPF 640
+TAE +H+VE LLLDV+V KGAA+L LL K + LL+RRD F
Sbjct: 260 ATAEAEHQVEGGLLLDVVVSKGAAVL*LLASKYEALLIRRDAF 132
Score = 53.3 bits (110), Expect(3) = 3e-024
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1 / -3
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGSWP HC+WC+ ++P G*W
Sbjct: 360 PCPGSWPSHCQWCQTTQPPG*W 295
Score = 49.6 bits (102), Expect(3) = 8e-023
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1 / -3
Query: 637 LPCPGSWP*HCRWCRCSRPRG*W 705
LPCPGS P*HC+WC+ +RP+ *W
Sbjct: 135 LPCPGSLP*HCQWCQKTRPQV*W 67
Score = 49.6 bits (102), Expect(3) = 9e-022
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1 / -3
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGSWP HC+WC+ ++P *W
Sbjct: 816 PCPGSWPSHCQWCQTTQPLR*W 751
Score = 30.9 bits (61), Expect(3) = 8e-023
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2 / -1
Query: 686 LDLEGDGLPCQRLHEDLHL 742
LDL+ DGL + LH+DLHL
Sbjct: 86 LDLKCDGLASEGLHKDLHL 30
Score = 28.1 bits (55), Expect(3) = 3e-024
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 686 LDLEGDGLPCQRLHEDLH 739
L+L+GDGL + L EDLH
Sbjct: 314 LNLQGDGLAGEGLDEDLH 261
Score = 26.3 bits (51), Expect(3) = 9e-022
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2 / -1
Query: 686 LDLEGDGLPCQRLHEDLH 739
L+L GDGL + L EDLH
Sbjct: 770 LNL*GDGLASEGLDEDLH 717
>gb|CN816060.1|CN816060 HRO4516_D11_H22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_D11_H22, mRNA sequence
Length = 668
Score = 168 bits (361), Expect = 1e-042
Identities = 71/77 (92%), Positives = 76/77 (98%)
Frame = -2 / +1
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITL+VE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 100 MQIFVKTLTGKTITLDVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
Query: 559 IQKESTLHLVLRLRGGI 509
IQKESTLHLVLRLRGG+
Sbjct: 280 IQKESTLHLVLRLRGGM 330
Score = 167 bits (360), Expect = 2e-042
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = -2 / +1
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITL+VE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 328 MQIFVKTLTGKTITLDVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 507
Query: 559 IQKESTLHLVLRLRGG 512
IQKESTLHLVLRLRGG
Sbjct: 508 IQKESTLHLVLRLRGG 555
Score = 114 bits (243), Expect = 2e-026
Identities = 48/76 (63%), Positives = 52/76 (68%)
Frame = +3 / -1
Query: 513 PPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXXX 692
PP SL T+ VDSFWML*S RV PSS+CFPAK+S CWSGGIPSLSWILA
Sbjct: 554 PPLSLRTK*RVDSFWML*SERVLPSSNCFPAKMSLCWSGGIPSLSWILALTFSMESEGST 375
Query: 693 XXXXXFPVSVFTKICI 740
FPV+V TKICI
Sbjct: 374 SRVMVFPVNVLTKICI 327
Score = 111 bits (237), Expect = 2e-025
Identities = 48/77 (62%), Positives = 50/77 (64%)
Frame = +3 / -1
Query: 510 IPPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILAXXXXXXXXXX 689
IPP SL T+W VDSFWML*S RV PSS+C PAKIS C SGGIPSLSWILA
Sbjct: 329 IPPLSLRTKWRVDSFWML*SERVLPSSNCLPAKISLC*SGGIPSLSWILALTFSIESEGS 150
Query: 690 XXXXXXFPVSVFTKICI 740
PV V TKICI
Sbjct: 149 TSRVIVLPVKVLTKICI 99
>gb|CN818740.1|CN818740 HRO4468_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_B09_C18, mRNA sequence
Length = 426
Score = 152 bits (327), Expect = 6e-038
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = -2 / +2
Query: 709 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 530
+TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct: 8 RTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 187
Query: 529 LRLRGG 512
LRLRGG
Sbjct: 188 LRLRGG 205
Score = 100 bits (213), Expect(2) = 7e-033
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +3 / -1
Query: 513 PPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILA 659
PPR ST+ VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 204 PPRRRSTK*RVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILA 58
Score = 55.1 bits (114), Expect(2) = 7e-033
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 640 PCPGSWP*HCRWCRCSRPRG*W 705
PCPGSWP* C+WC+ +RP+G*W
Sbjct: 77 PCPGSWP*RCQWCQMTRPQG*W 12
>gb|CN814878.1|CN814878 HRO4503_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E02_J03, mRNA sequence
Length = 424
Score = 135 bits (289), Expect = 1e-032
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -2 / +3
Query: 685 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 512
SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 12 SSDTFDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 185
Score = 100 bits (213), Expect(2) = 1e-026
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +3 / -1
Query: 513 PPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILA 659
PPR ST+ VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 184 PPRRRSTK*RVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILA 38
Score = 34.5 bits (69), Expect(2) = 1e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / -2
Query: 640 PCPGSWP*HCRWCR 681
PCPGSWP* C+ C+
Sbjct: 57 PCPGSWP*RCQRCQ 16
>gb|CN816023.1|CN816023 HRO4516_A09_B18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A09_B18, mRNA sequence
Length = 686
Score = 124 bits (265), Expect = 2e-029
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = -2 / +2
Query: 499 SLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRAKKKIKN*GAA 341
SLQALARKYNQ+KMICRKCYARLHPRAVNCRKKKCGHSNQLR KKKIKN*G++
Sbjct: 314 SLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN*GSS 472
Score = 97.3 bits (206), Expect = 3e-021
Identities = 38/47 (80%), Positives = 41/47 (87%)
Frame = -1 / +1
Query: 491 GARSQVQPGQDDLPQMLCTTAP*GCQLPQEEVWSQQPAEGQEEDQEL 351
G RSQVQPG+DDLPQ+LCT AP GCQLPQEE+W QQ AE QEEDQEL
Sbjct: 322 GPRSQVQPGEDDLPQVLCTPAPKGCQLPQEEMWPQQSAEAQEEDQEL 462
>gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A06_A11, mRNA sequence
Length = 372
Score = 121 bits (258), Expect = 2e-028
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = -2 / +2
Query: 664 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 512
VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 11 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 163
Score = 100 bits (213), Expect = 3e-022
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +3 / -1
Query: 513 PPRSLSTRWSVDSFWML*SARVRPSSSCFPAKISRCWSGGIPSLSWILA 659
PPR ST+ VDSFWML*SARVRPSSSC PAK+ RCWSGG+PSLSWILA
Sbjct: 162 PPRRRSTK*RVDSFWML*SARVRPSSSCLPAKMRRCWSGGMPSLSWILA 16
>gb|CN821651.1|CN821651 HRO4408_F11_L22Z Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_F11_L22, mRNA
sequence
Length = 453
Score = 108 bits (230), Expect = 1e-024
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 718 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 539
LTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S L
Sbjct: 11 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVL 190
Query: 538 HLVLRLRGG 512
HLVL LRGG
Sbjct: 191 HLVLALRGG 217
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,935,447
Number of Sequences: 8143
Number of extensions: 162418
Number of successful extensions: 1338
Number of sequences better than 1.0e-020: 9
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 293378458
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)