TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Aven... 125 4e-030
>gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_D04_H07, mRNA sequence
Length = 654
Score = 125 bits (268), Expect = 4e-030
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = -3 / +3
Query: 414 LANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
LANDAKA+KGGGERQFNGLVDVYRKTLK+DGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 3 LANDAKASKGGGERQFNGLVDVYRKTLKTDGIAGLYRGFNISCVGIIVYRGLY 161
Score = 100 bits (214), Expect = 1e-022
Identities = 36/47 (76%), Positives = 38/47 (80%)
Frame = -2 / +2
Query: 397 GCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSV 257
G G R*+AVQW C CLPQD+Q WYCWALPWI HLLCWNHCL WSV
Sbjct: 20 GI*GWR*EAVQWPC*CLPQDSQDRWYCWALPWIQHLLCWNHCLPWSV 160
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,414,207
Number of Sequences: 8143
Number of extensions: 103354
Number of successful extensions: 3372
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 138165888
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)