TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Aven... 601 e-173
gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Aven... 345 2e-096
gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Aven... 219 3e-059
gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Aven... 123 2e-030
>gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_H07_O13, mRNA
sequence
Length = 839
Score = 601 bits (1306), Expect = e-173
Identities = 250/276 (90%), Positives = 260/276 (94%)
Frame = -3 / +3
Query: 1129 LIVGDDLIQSDVILGSKKIEAPVLFRGIGHTANPSNSLVLKVLSASPSAYSANPKTKLSL 950
LI GDDLIQSDVILGSKKIE+PVLFRGIGH A+PSNSLVLKVLSASPSAYSANPKTKL+
Sbjct: 12 LIAGDDLIQSDVILGSKKIESPVLFRGIGHAAHPSNSLVLKVLSASPSAYSANPKTKLAS 191
Query: 949 PPSLTGSAISLVSVMQARNNARVLLSGSLDLFSNRFLKSGVQKAGSKTRYERAGNEQFVT 770
PPSLTGSAISLVSVMQARNNARVL+SGSLDLFSNRFLKSGV+KAGSK +E+AGNEQFVT
Sbjct: 192 PPSLTGSAISLVSVMQARNNARVLISGSLDLFSNRFLKSGVKKAGSKISHEKAGNEQFVT 371
Query: 769 ETSKWVFHERGHLKAVNVKHHKVGETNEPGMYRINDDLEYSVEIYEWSGTSWKPYVADDV 590
ETSKWVFHERGHLKAVNV HHKVGETNEP MYRINDDLEYSVEIYEWSGTSWKPYVADDV
Sbjct: 372 ETSKWVFHERGHLKAVNVVHHKVGETNEPSMYRINDDLEYSVEIYEWSGTSWKPYVADDV 551
Query: 589 QLQFFMMSPYVLKTMSNDNKGLYSTSFKVPDVYGVFQFKVEYQRLGYTGLSFTKQIPVRP 410
Q+QF+MMSPYVLK MS D KGLYSTSFKVPDVYGVFQFKVEYQRLGYTG+S KQIPVRP
Sbjct: 552 QIQFYMMSPYVLKNMSTDKKGLYSTSFKVPDVYGVFQFKVEYQRLGYTGVSLAKQIPVRP 731
Query: 409 YRHNEYERFITSAYPYYTASFSTMCAFFIFSLVYLY 302
YRHNEYERFITSAYPYY ASFSTM AFFIFS YLY
Sbjct: 732 YRHNEYERFITSAYPYYAASFSTMGAFFIFSFAYLY 839
Score = 539 bits (1172), Expect = e-154
Identities = 228/276 (82%), Positives = 243/276 (88%)
Frame = +3 / -2
Query: 303 YRYTSENMKKAHIVENEAV*YGYADVMNLSYSLCL*GRTGICFVKDKPVYPSLWYSTLNW 482
Y+Y +ENMKKA IVENEA *YGYA+VMNLSYSLCL G TGICF ++ PVYPSLWYSTLNW
Sbjct: 838 YKYANENMKKAPIVENEAA*YGYAEVMNLSYSLCLYGLTGICFARETPVYPSLWYSTLNW 659
Query: 483 KTP*TSGTLKDVEYKPLLSFDIVFRT*GLIMKNWSCTSSATYGFQLVPDHS*ISTEYSRS 662
KTP*TSGTLKDVEYKP LS D+ FRT*GLIM N TSSATYGFQLVPDHS*ISTEYS+S
Sbjct: 658 KTP*TSGTLKDVEYKPFLSVDMFFRT*GLIM*N*I*TSSATYGFQLVPDHS*ISTEYSKS 479
Query: 663 SLMRYMPGSLVSPTLWCLTLTALRCPLSWKTHLLVSVTNCSFPALSYLVLLPAF*TPDFR 842
SLMRYM GS VSPTLWC T TA R PLSWKTHLLVSVTNCSFPA S+L+LLPAF TPDFR
Sbjct: 478 SLMRYMLGSFVSPTLWCTTFTAFRWPLSWKTHLLVSVTNCSFPAFSWLILLPAFLTPDFR 299
Query: 843 NRLLKRSSDPDSSTRALFLACITETSDIADPVSDGGNDNLVFGLAEYADGEADRTFRTKL 1022
RLL +SSDPD +TRALFLACITETSDIADPV DGG+ NLVFG AEYADGEADRTF+TKL
Sbjct: 298 KRLLNKSSDPDINTRALFLACITETSDIADPVRDGGDANLVFGFAEYADGEADRTFKTKL 119
Query: 1023 FDGLAVCPIPRNNTGASIFLDPSMTSD*IRSSPTIK 1130
FDG A CPIPRNNTG SIFLDP++TSD IRSSP IK
Sbjct: 118 FDG*AACPIPRNNTGDSIFLDPNITSDCIRSSPAIK 11
Score = 423 bits (919), Expect = e-119
Identities = 192/276 (69%), Positives = 221/276 (80%)
Frame = +2 / -1
Query: 302 VQVHKREYEESTHR*K*GSVVWVR*CYEPLILVMPVRAHWNLLCKRQTSISQPLVLNFEL 481
VQV K EYE+S+H *K GS+VW+ * YE +L+MPV HWNLLC+R TS+S+PLVLNFEL
Sbjct: 839 VQVCK*EYEKSSHC*KRGSIVWIC*SYESFVLIMPVWPHWNLLCQRNTSVSKPLVLNFEL 660
Query: 482 ENSVDIRNFEGC*V*TLVVIRHSFQNIRTHHEKLELHIISNIWLPACSRPFIDLNRVFQV 661
ENS++IRNFEGC*+ L V H FQNIRTHH KL L+IISNIW PACSRPFIDLNRVFQV
Sbjct: 659 ENSINIRNFEGC*IQALFVS*HVFQNIRTHHVKLNLNIISNIWFPACSRPFIDLNRVFQV 480
Query: 662 IVNAVHAWFIGLPNLVVLNINSLKVPPLMEDPFACLCHKLLISSSLVSRFATSLLNTRLQ 841
I+NAVHA FI L NLVV NI+ L + PLMEDPFA LCH+L ISS L++ AT LLNTRLQ
Sbjct: 479 IINAVHARFICLSNLVVHNIHCL*MAPLMEDPFARLCHELFISSFLMAYLATRLLNTRLQ 300
Query: 842 EPVAKKIK*SR*QHPSIISCLHNRNQ*YS*PSKRWRQR*LSLWVS*VC*WRGR*DFQNQT 1021
E VAK+I+ SR QH SIISCLHNRNQ*YS*P +RWR LSL V *+ *W R +FQNQT
Sbjct: 299 EAVAKQIQRSRYQHTSIISCLHNRNQ*YS*PCERWRGCQLSLRVC*IR*WGSRQNFQNQT 120
Query: 1022 V*WISRVSNSTK*YRSLNLFRPQYDI*LNKIITNNQ 1129
V*W+S +SNS+K YR LNLF QY I*L +II +NQ
Sbjct: 119 V*WMSCMSNSSKQYRRLNLFGSQYHI*LYQIIPSNQ 12
Score = 365 bits (792), Expect = e-102
Identities = 177/275 (64%), Positives = 192/275 (69%)
Frame = +1 / -3
Query: 304 TGTQARI*RKHTSLKMRQCSMGTLML*TSHTRYACKGALESAL*KTNQYIPASGTQL*TG 483
T Q RI*+K LK RQ SM L L* T YAC +LESAL + +Q I ASGTQL*TG
Sbjct: 837 TSMQMRI*KKLPLLKTRQHSMDMLKL*IFRTHYACMASLESALPEKHQCIQASGTQL*TG 658
Query: 484 KLRRHQEL*RMLSINPCCHST*FSEHKDSS*KTGVAHHQQHMASSLFQTIHRSQQSIPGH 663
KL +H EL*RML+ +P C T FSEHKDSS KT HHQQHM SSLFQTIHRSQ SIP H
Sbjct: 657 KLHKHPEL*RMLNTSPFCQLTCFSEHKDSSCKTEFEHHQQHMVSSLFQTIHRSQPSIPSH 478
Query: 664 R*CGTCLVHWSPQPCGA*H*QP*GAPSHGRPICLSLSQIAHFQLSRISFCYQPFEHQTSG 843
*CGTC VH S QPCGA H P PSHGRPIC SLS+I HFQLS CY P HQTSG
Sbjct: 477 H*CGTC*VHLSLQPCGAQHSLPLDGPSHGRPICSSLSRIVHFQLSHGLSCYPPS*HQTSG 298
Query: 844 TGC*KDQVIQIAAPEHYFLPA*PKPVI*LTQ*AMEATIT*SLG*LSMLMERQIGLSEPNC 1023
+GC* + IQI+ EHYFLPA* KPVI*LT * ME T*S G L+ LM +Q LS+PNC
Sbjct: 297 SGC*TNPAIQISTHEHYFLPA*QKPVI*LTL*EMEGMPT*SSGLLNTLMGKQTELSKPNC 118
Query: 1024 LMD*PCVQFHEIIQEPQSF*TPV*HLTE*DHHQQS 1128
LMD VQF E IQE QSF P+ HLT DH QQS
Sbjct: 117 LMDELHVQFLETIQETQSFWIPISHLTVSDHPQQS 13
Score = 362 bits (784), Expect = e-101
Identities = 172/278 (61%), Positives = 198/278 (71%)
Frame = -2 / +2
Query: 1136 SHLDCW**SYSVRCHTGV*KD*GSCIISWNWTHG*SIKQFGXXXXXXXXXXXXXXPKD*V 957
+ LDCW *S +VRC G+ KD* SCI+S NWT SIKQFG P+D*V
Sbjct: 5 TRLDCWG*SDTVRCDIGIQKD*VSCIVSRNWTCSSSIKQFGFESSVCFPISVFSKPED*V 184
Query: 956 IVASIAYWVSYITGFGYAGKK*CSGAAIWIT*SF*QPVPEVWCSKGW*QNEIRESWK*AI 777
+ SI++ VSYITGF YAGKK*CS IWI *QP+PEVWC +G *Q++ ESWK* I
Sbjct: 185 GIPSISHRVSYITGFCYAGKK*CSCVDIWIAGFV*QPLPEVWC*EGG*QDKP*ESWK*TI 364
Query: 776 CDRDKQMGLP*EGAP*GC*C*APQGWGDQ*TRHVPH*R*PGILC*DL*MVWNKLEAICC* 597
DRD+QMGLP*EG G C APQGW D+*T HVPH* * GIL *DL*MVWNKLE ICC*
Sbjct: 365 RDRDEQMGLP*EGPSKGSECCAPQGWRDK*T*HVPH***LGILG*DL*MVWNKLETICC* 544
Query: 596 *CATPVFHDESLCSENYVE*QQGFILNILQSS*CLRSFPVQS*VPEAGIYWFVFYKADSS 417
*C+ V HDESLCSE +V *Q+G + NILQSS CL SFPVQS*VPEA I+W KADSS
Sbjct: 545 *CSNSVLHDESLCSEKHVN*QKGLVFNILQSSGCLWSFPVQS*VPEAWIHWCFSGKADSS 724
Query: 416 APLQA*RV*EVHNISVPILHCLIFNDVCFLHILACVPV 303
+QA* V ++HN S+ IL CL+FN+ F HIL C+ V
Sbjct: 725 EAIQA**VRKIHNFSISILCCLVFNNGSFFHILICILV 838
Score = 188 bits (404), Expect(2) = 9e-094
Identities = 89/129 (68%), Positives = 95/129 (73%)
Frame = -1 / +1
Query: 690 MNQACTALTMTWNTLLRSMNGLEQAGSHMLLMMCNSSFS**VLMF*KLCRMTTRVYTQHP 511
MN ACTAL MTWNT LRSMNGLEQAG+HMLLMM SF+**VLMF*K C++T R QHP
Sbjct: 451 MNLACTALMMTWNTRLRSMNGLEQAGNHMLLMMFKFSFT**VLMF*KTCQLTKRACIQHP 630
Query: 510 SKFLMSTEFSSSKLSTRGWDILVCLLQSRFQCALTGITSMRGS*HQRTHTTLPHFQRCVL 331
SKF M EFSSSKLSTRG D LV L QSRFQ TGI S + S* Q HT LP FQ+ L
Sbjct: 631 SKFRMFMEFSSSKLSTRGLDTLVFLWQSRFQ*GHTGIMSTKDS*LQHIHTMLPRFQQWEL 810
Query: 330 SSYSRLCTC 304
SYS L TC
Sbjct: 811 FSYSHLHTC 837
Score = 171 bits (369), Expect(2) = 9e-094
Identities = 83/126 (65%), Positives = 92/126 (73%)
Frame = -1 / +1
Query: 1128 *LLVMILFSQMSYWGLKRLRLLYYFVELDTRLIHQTVWF*KSYLPLHQHTQLTQRLSYRC 949
*LL MI +SQM YW KRL LLY F ELD +LIHQTVWF*K L HQ Q T+RLS+
Sbjct: 13 *LLGMI*YSQM*YWDPKRLSLLYCFEELDMQLIHQTVWF*KFCLLPHQRIQQTRRLSWHP 192
Query: 948 LHRLLGQLYHWFRLCRQEIMLGCCYLDHLIFLATGS*SLVFKRLVAKRDTRELEMSNL*Q 769
LH GQLYHWF LCRQEIML C YLD I LAT S*SLV +R VA+ R+LEM+N *Q
Sbjct: 193 LHLSQGQLYHWFLLCRQEIMLVC*YLDRWICLATAS*SLVLRRRVAR*AMRKLEMNNS*Q 372
Query: 768 RQANGS 751
R+ANGS
Sbjct: 373 RRANGS 390
>gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D10_G20, mRNA
sequence
Length = 766
Score = 345 bits (747), Expect(2) = 2e-096
Identities = 139/160 (86%), Positives = 144/160 (90%)
Frame = -3 / +3
Query: 751 FHERGHLKAVNVKHHKVGETNEPGMYRINDDLEYSVEIYEWSGTSWKPYVADDVQLQFFM 572
F RGHLKAVNV HHKVGETNEP MYRINDDLEYSVEIYEWSGTSWKPYVADDVQ+QF+M
Sbjct: 12 FGTRGHLKAVNVVHHKVGETNEPSMYRINDDLEYSVEIYEWSGTSWKPYVADDVQIQFYM 191
Query: 571 MSPYVLKTMSNDNKGLYSTSFKVPDVYGVFQFKVEYQRLGYTGLSFTKQIPVRPYRHNEY 392
MSPYVLK MS D KGLYSTSFKVPDVYGVFQFKVEYQRLGYTG+S KQIPVRPYRHNEY
Sbjct: 192 MSPYVLKNMSTDKKGLYSTSFKVPDVYGVFQFKVEYQRLGYTGVSLAKQIPVRPYRHNEY 371
Query: 391 ERFITSAYPYYTASFSTMCAFFIFSLVYLYHK*RTHGSAQ 272
ERFITSAYPYY ASFSTM AFFIFS YLYHK* +H A+
Sbjct: 372 ERFITSAYPYYAASFSTMGAFFIFSFAYLYHK*ISHRIAE 491
Score = 293 bits (635), Expect = 3e-080
Identities = 123/152 (80%), Positives = 132/152 (86%)
Frame = +3 / -1
Query: 288 VLYLWYRYTSENMKKAHIVENEAV*YGYADVMNLSYSLCL*GRTGICFVKDKPVYPSLWY 467
++YLWY+Y +ENMKKA IVENEA *YGYA+VMNLSYSLCL G TGICF ++ PVYPSLWY
Sbjct: 475 LIYLWYKYANENMKKAPIVENEAA*YGYAEVMNLSYSLCLYGLTGICFARETPVYPSLWY 296
Query: 468 STLNWKTP*TSGTLKDVEYKPLLSFDIVFRT*GLIMKNWSCTSSATYGFQLVPDHS*IST 647
STLNWKTP*TSGTLKDVEYKP LS D+ FRT*GLIM N TSSATYGFQLVPDHS*IST
Sbjct: 295 STLNWKTP*TSGTLKDVEYKPFLSVDMFFRT*GLIM*N*I*TSSATYGFQLVPDHS*IST 116
Query: 648 EYSRSSLMRYMPGSLVSPTLWCLTLTALRCPL 743
EYS+SSLMRYM GS VSPTLWC T TA R PL
Sbjct: 115 EYSKSSLMRYMLGSFVSPTLWCTTFTAFRWPL 20
Score = 254 bits (550), Expect = 2e-068
Identities = 110/162 (67%), Positives = 128/162 (79%)
Frame = +2 / -3
Query: 266 RNLCAPVSPLFVVQVHKREYEESTHR*K*GSVVWVR*CYEPLILVMPVRAHWNLLCKRQT 445
R C ++ LFVVQV K EYE+S+H *K GS+VW+ * YE +L+MPV HWNLLC+R T
Sbjct: 497 RTFCYSMAYLFVVQVCK*EYEKSSHC*KRGSIVWIC*SYESFVLIMPVWPHWNLLCQRNT 318
Query: 446 SISQPLVLNFELENSVDIRNFEGC*V*TLVVIRHSFQNIRTHHEKLELHIISNIWLPACS 625
S+S+PLVLNFELENS++IRNFEGC*+ L V H FQNIRTHH KL L+IISNIW PACS
Sbjct: 317 SVSKPLVLNFELENSINIRNFEGC*IQALFVS*HVFQNIRTHHVKLNLNIISNIWFPACS 138
Query: 626 RPFIDLNRVFQVIVNAVHAWFIGLPNLVVLNINSLKVPPLME 751
RPFIDLNRVFQVI+NAVHA FI L NLVV NI+ L + P E
Sbjct: 137 RPFIDLNRVFQVIINAVHARFICLSNLVVHNIHCL*MAPRAE 12
Score = 216 bits (466), Expect = 6e-057
Identities = 100/154 (64%), Positives = 114/154 (74%)
Frame = -2 / +2
Query: 755 GLP*EGAP*GC*C*APQGWGDQ*TRHVPH*R*PGILC*DL*MVWNKLEAICC**CATPVF 576
G+ EG G C APQGW D+*T HVPH* * GIL *DL*MVWNKLE ICC**C+ V
Sbjct: 8 GIRHEGPSKGSECCAPQGWRDK*T*HVPH***LGILG*DL*MVWNKLETICC**CSNSVL 187
Query: 575 HDESLCSENYVE*QQGFILNILQSS*CLRSFPVQS*VPEAGIYWFVFYKADSSAPLQA*R 396
HDESLCSE +V *Q+G + NILQSS CL SFPVQS*VPEA I+W KADSS +QA*
Sbjct: 188 HDESLCSEKHVN*QKGLVFNILQSSGCLWSFPVQS*VPEAWIHWCFSGKADSSEAIQA** 367
Query: 395 V*EVHNISVPILHCLIFNDVCFLHILACVPVPQI 294
V ++HN S+ IL CL+FN+ F HIL C+ VPQI
Sbjct: 368 VRKIHNFSISILCCLVFNNGSFFHILICILVPQI 469
Score = 208 bits (448), Expect = 2e-054
Identities = 98/150 (65%), Positives = 105/150 (70%)
Frame = +1 / -2
Query: 295 ICGTGTQARI*RKHTSLKMRQCSMGTLML*TSHTRYACKGALESAL*KTNQYIPASGTQL 474
ICGT Q RI*+K LK RQ SM L L* T YAC +LESAL + +Q I ASGTQL
Sbjct: 468 ICGTSMQMRI*KKLPLLKTRQHSMDMLKL*IFRTHYACMASLESALPEKHQCIQASGTQL 289
Query: 475 *TGKLRRHQEL*RMLSINPCCHST*FSEHKDSS*KTGVAHHQQHMASSLFQTIHRSQQSI 654
*TGKL +H EL*RML+ +P C T FSEHKDSS KT HHQQHM SSLFQTIHRSQ SI
Sbjct: 288 *TGKLHKHPEL*RMLNTSPFCQLTCFSEHKDSSCKTEFEHHQQHMVSSLFQTIHRSQPSI 109
Query: 655 PGHR*CGTCLVHWSPQPCGA*H*QP*GAPS 744
P H *CGTC VH S QPCGA H P PS
Sbjct: 108 PSHH*CGTC*VHLSLQPCGAQHSLPLDGPS 19
Score = 196 bits (422), Expect = 8e-051
Identities = 92/133 (69%), Positives = 99/133 (74%)
Frame = -1 / +1
Query: 690 MNQACTALTMTWNTLLRSMNGLEQAGSHMLLMMCNSSFS**VLMF*KLCRMTTRVYTQHP 511
MN ACTAL MTWNT LRSMNGLEQAG+HMLLMM SF+**VLMF*K C++T R QHP
Sbjct: 73 MNLACTALMMTWNTRLRSMNGLEQAGNHMLLMMFKFSFT**VLMF*KTCQLTKRACIQHP 252
Query: 510 SKFLMSTEFSSSKLSTRGWDILVCLLQSRFQCALTGITSMRGS*HQRTHTTLPHFQRCVL 331
SKF M EFSSSKLSTRG D LV L QSRFQ TGI S + S* Q HT LP FQ+ L
Sbjct: 253 SKFRMFMEFSSSKLSTRGLDTLVFLWQSRFQ*GHTGIMSTKDS*LQHIHTMLPRFQQWEL 432
Query: 330 SSYSRLCTCTTNK 292
SYS L TCTTN+
Sbjct: 433 FSYSHLHTCTTNR 471
Score = 24.0 bits (46), Expect(2) = 2e-096
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 246 *ICGQVLPGAILWNHIF 196
*+C V PG ILW+ F
Sbjct: 505 *LC*GVFPGVILWDIFF 555
>gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F03_L06, mRNA
sequence
Length = 577
Score = 219 bits (472), Expect(2) = 3e-059
Identities = 89/105 (84%), Positives = 93/105 (88%)
Frame = -3 / +3
Query: 598 DDVQLQFFMMSPYVLKTMSNDNKGLYSTSFKVPDVYGVFQFKVEYQRLGYTGLSFTKQIP 419
DDVQ+ F+MMSPYVLK MS D KGLYSTSFKVPDVYGVFQFKVEYQRLGYT +S KQIP
Sbjct: 3 DDVQI*FYMMSPYVLKNMSTDKKGLYSTSFKVPDVYGVFQFKVEYQRLGYTAVSLAKQIP 182
Query: 418 VRPYRHNEYERFITSAYPYYTASFSTMCAFFIFSLVYLYHK*RTH 284
VRPYRHNEYERFITSAYPYY ASFSTM AFFIFS YLYHK* +H
Sbjct: 183 VRPYRHNEYERFITSAYPYYAASFSTMGAFFIFSFAYLYHK*ISH 317
Score = 190 bits (409), Expect(2) = 5e-050
Identities = 83/108 (76%), Positives = 90/108 (83%)
Frame = +3 / -1
Query: 276 ALP*VLYLWYRYTSENMKKAHIVENEAV*YGYADVMNLSYSLCL*GRTGICFVKDKPVYP 455
A+ ++YL YRY +ENMKKA IVENEA *YGYA+VMNLSYSLCL G TGICF ++ VYP
Sbjct: 325 AIQWLIYL*YRYANENMKKAPIVENEAA*YGYAEVMNLSYSLCLYGLTGICFARETAVYP 146
Query: 456 SLWYSTLNWKTP*TSGTLKDVEYKPLLSFDIVFRT*GLIMKNWSCTSS 599
SLWYSTLNWKTP*TSGTLKDVEYKP LS DI FRT*GLIM N TSS
Sbjct: 145 SLWYSTLNWKTP*TSGTLKDVEYKPFLSVDIFFRT*GLIM*N*I*TSS 2
Score = 166 bits (358), Expect = 5e-042
Identities = 69/108 (63%), Positives = 88/108 (81%)
Frame = +2 / -3
Query: 275 CAPVSPLFVVQVHKREYEESTHR*K*GSVVWVR*CYEPLILVMPVRAHWNLLCKRQTSIS 454
C ++ LFV+QV K EYE+ +H *K GS+VW+ * YE L+L+MPV HWNLLC+R +S+S
Sbjct: 326 CYSMAYLFVIQVCK*EYEKGSHC*KRGSIVWIC*SYESLVLIMPVWPHWNLLCQRNSSVS 147
Query: 455 QPLVLNFELENSVDIRNFEGC*V*TLVVIRHSFQNIRTHHEKLELHII 598
+PLVLNFELENS++I NFEGC*+*TL+V H FQN+RTHH KL L+II
Sbjct: 146 KPLVLNFELENSINIWNFEGC*I*TLLVS*HIFQNVRTHHVKLNLNII 3
Score = 136 bits (292), Expect = 6e-033
Identities = 65/102 (63%), Positives = 74/102 (72%)
Frame = -2 / +2
Query: 599 **CATPVFHDESLCSENYVE*QQGFILNILQSS*CLRSFPVQS*VPEAGIYWFVFYKADS 420
**C+ V HDESL SE YV *Q+GFI NILQSS CL SFPVQS*VPEA I+ KADS
Sbjct: 2 **CSNLVLHDESLRSEKYVN*QEGFIFNILQSSRCLWSFPVQS*VPEAWIHCCFSGKADS 181
Query: 419 SAPLQA*RV*EVHNISVPILHCLIFNDVCFLHILACVPVPQI 294
S +QA* V E+HN S+ IL CL+FN+ HIL C+PV QI
Sbjct: 182 SEAIQA**VREIHNFSISILCCLVFNNGSLFHILICIPVSQI 307
Score = 132 bits (283), Expect = 1e-031
Identities = 65/103 (63%), Positives = 72/103 (69%)
Frame = -1 / +1
Query: 600 LMMCNSSFS**VLMF*KLCRMTTRVYTQHPSKFLMSTEFSSSKLSTRGWDILVCLLQSRF 421
LMM SF+**VL F*K+C++T RVY QHPSKF M EFSSSKLSTRG D L+ L QSRF
Sbjct: 1 LMMFKFSFT**VLTF*KICQLTRRVYIQHPSKFQMFMEFSSSKLSTRGLDTLLFLWQSRF 180
Query: 420 QCALTGITSMRGS*HQRTHTTLPHFQRCVLSSYSRLCTCTTNK 292
Q TGI S R S* Q HT LP FQ+ SYS L TC TN+
Sbjct: 181 Q*GHTGIMSTRDS*LQHIHTMLPRFQQWEPFSYSHLHTCITNR 309
Score = 130 bits (278), Expect = 5e-031
Identities = 64/102 (62%), Positives = 70/102 (68%)
Frame = +1 / -2
Query: 295 ICGTGTQARI*RKHTSLKMRQCSMGTLML*TSHTRYACKGALESAL*KTNQYIPASGTQL 474
IC TG Q RI*++ LK RQ SM L L* S T YAC +LESAL + Q I ASGTQL
Sbjct: 306 ICDTGMQMRI*KRLPLLKTRQHSMDMLKL*ISRTHYACMASLESALPEKQQCIQASGTQL 127
Query: 475 *TGKLRRHQEL*RMLSINPCCHST*FSEHKDSS*KTGVAHHQ 600
*TGKL +H EL*RML+INP C T FSE KDSS KT HHQ
Sbjct: 126 *TGKLHKHLEL*RMLNINPSCQLTYFSERKDSSCKTKFEHHQ 1
Score = 25.4 bits (49), Expect(2) = 3e-059
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1 / +1
Query: 246 *ICGQVLPGAILWN 205
*+C V PGAILW+
Sbjct: 343 *LCQGVFPGAILWD 384
Score = 23.5 bits (45), Expect(2) = 5e-050
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -3
Query: 209 HKIAPGNT 232
HKIAPGNT
Sbjct: 380 HKIAPGNT 357
>gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H10_P20, mRNA
sequence
Length = 338
Score = 123 bits (264), Expect(2) = 2e-030
Identities = 50/63 (79%), Positives = 53/63 (84%)
Frame = -3 / +1
Query: 460 RLGYTGLSFTKQIPVRPYRHNEYERFITSAYPYYTASFSTMCAFFIFSLVYLYHK*RTHG 281
RLGYTG+S KQIPVRPYRHNEYERFIT AYPYY ASFSTM AFFIFS YLYHK* +H
Sbjct: 1 RLGYTGVSLAKQIPVRPYRHNEYERFITPAYPYYAASFSTMGAFFIFSFAYLYHK*ISHR 180
Query: 280 SAQ 272
A+
Sbjct: 181 IAE 189
Score = 110 bits (235), Expect = 5e-025
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = +3 / -1
Query: 288 VLYLWYRYTSENMKKAHIVENEAV*YGYADVMNLSYSLCL*GRTGICFVKDKPVYPS 458
++YLWY+Y +ENMKKA IVENEA *YGYA VMNLSYSLCL G TGICF ++ PVYPS
Sbjct: 173 LIYLWYKYANENMKKAPIVENEAA*YGYAGVMNLSYSLCLYGLTGICFARETPVYPS 3
Score = 24.0 bits (46), Expect(2) = 2e-030
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1 / +2
Query: 246 *ICGQVLPGAILWNHIF 196
*+C V PG ILW+ F
Sbjct: 203 *LC*GVFPGVILWDIFF 253
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 14,714,107
Number of Sequences: 8143
Number of extensions: 220597
Number of successful extensions: 910
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 454657320
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)