TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.472
(1282 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817082.1|CN817082 HRO4528_A08_B16ZS5 Lib AA071E1X Aven... 413 e-123
gb|CN817300.1|CN817300 HRO4464_H04_O08ZS5 Lib AA070E1X Aven... 254 6e-073
gb|BE439126.1|BE439126 CDO202_WHE2C0122F ITEC CDO Oat cDNA ... 223 4e-059
gb|AA231639.1|AA231639 CDO202.F cDNA from oat Avena sativa ... 214 3e-056
gb|AA231908.1|AA231908 CDO202.R cDNA from oat Avena sativa ... 112 6e-028
>gb|CN817082.1|CN817082 HRO4528_A08_B16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A08_B16, mRNA sequence
Length = 720
Score = 413 bits (897), Expect(2) = e-123
Identities = 170/183 (92%), Positives = 179/183 (97%)
Frame = -1 / +2
Query: 856 RGRITVQTDKSPYQYRGMFHALGTVYREEGFRALYKGWLPSVIGVVPYVGLNFAVYESLK 677
RGRITVQTDKSPYQYRGMFHALGTVYREEGFRALY+GWLPSVIGVVPYVGLNFAVYESLK
Sbjct: 11 RGRITVQTDKSPYQYRGMFHALGTVYREEGFRALYRGWLPSVIGVVPYVGLNFAVYESLK 190
Query: 676 DWLLQTNSFGLANDNELHVVTRLGCGAVAGTIGQTVAYPLDVIRRRMQMVGWSHADSIVT 497
DW+L+TN+FGLA++NELHVVTRLGCGAVAGTIGQTVAYPLDV+RRRMQMVGW+HA SIVT
Sbjct: 191 DWVLRTNAFGLADNNELHVVTRLGCGAVAGTIGQTVAYPLDVVRRRMQMVGWNHAASIVT 370
Query: 496 GQGKEALQYNGMIDAFRKTVRHEGVGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVE 317
G+GK ALQYNGMIDAFRKTVRHEG GALYKGLVPNSVKVVPSIAIAFVTYE VKDVLGVE
Sbjct: 371 GEGKAALQYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEAVKDVLGVE 550
Query: 316 MRI 308
MRI
Sbjct: 551 MRI 559
Score = 311 bits (673), Expect(2) = 2e-092
Identities = 137/183 (74%), Positives = 146/183 (79%)
Frame = +3 / -1
Query: 309 ILIXXXXXXXXXXXXXNAMAIEGTTLTEFGTRPL*RAPTPS*RTVFLNASIMPLYWSASL 488
ILI AMA+EGTT TE GTRPL +AP PS RTVFLNASI+PLYW A+L
Sbjct: 558 ILISTPRTSFTASYVTKAMAMEGTTFTELGTRPLYKAPNPSWRTVFLNASIIPLYWRAAL 379
Query: 489 PCPVTIESAWLQPTICILLLMTSSGYATVWPMVPATAPHPSLVTTCSSLSFARPNEFVWS 668
P PVTIE+A QPTICILLL TS GYATV PMVPATAPHPSLVTTC+SL A PN FV
Sbjct: 378 PSPVTIEAA*FQPTICILLLTTSRGYATVCPMVPATAPHPSLVTTCNSLLSASPNAFVRR 199
Query: 669 SQSLRDSYTAKLRPTYGTTPITDGSHPLYRARKPSSR*TVPSA*NIPRYW*GDLSV*TVI 848
+QS RDSYTAKLRPT GTTPITDGSHPLY+ARKPSSR TVP+A NIPRYW GDLSV*TVI
Sbjct: 198 TQSFRDSYTAKLRPT*GTTPITDGSHPLYKARKPSSRYTVPNAWNIPRYWYGDLSV*TVI 19
Query: 849 LPL 857
LPL
Sbjct: 18 LPL 10
Score = 298 bits (645), Expect(2) = 2e-086
Identities = 121/183 (66%), Positives = 148/183 (80%)
Frame = +2 / -3
Query: 308 YPHLYS*HILHNLVSHKCNGN*GHHLD*VRHKTLVESTNSFMTNSLPECIDHAIVLECFF 487
YPHLYS*+ILH+LV K NG+ HHL *V HKTLV+ST SF+ NSLP+CI+H IVLE F
Sbjct: 559 YPHLYS*NILHSLVRDKSNGDGRHHLH*VGHKTLVQSTKSFVANSLPKCINHTIVLESRF 380
Query: 488 ALPSNNRVSMAPTNHLHSSPDDIKRVCNSLANGSRHSSTPKPCNYVQLVVICKAK*ICLE 667
A SNNR SM PTNHLH SPD+IKRVC+ L GS HSST KPC+Y+QL++ICK+K IC E
Sbjct: 379 AFSSNNRSSMIPTNHLHPSPDNIKRVCHGLPYGSSHSSTSKPCDYMQLIIICKSKCICTE 200
Query: 668 *PVFEGLIYSEVETNIWNNSDYRWKPPFV*STKAFFTVDCTQCMKHTTVLVGRFVCLNSD 847
PV + L++S+V+ NI +NS++ WKPP V*ST+AFFTV C QCM+HTTVLV R +CLNS+
Sbjct: 199 DPVLQRLVHSKVKANIRDNSNH*WKPPSV*STEAFFTVHCAQCMEHTTVLVWRLICLNSN 20
Query: 848 PSP 856
P+P
Sbjct: 19 PTP 11
Score = 296 bits (640), Expect(2) = 2e-086
Identities = 114/182 (62%), Positives = 136/182 (74%)
Frame = -3 / +1
Query: 854 GKDHCSDRQISLPVPWYVSCTGYSLP*RRLSCSIQRVASICNRSCSICWSQLRCI*VPQR 675
G D+CSDR +S+PVPWYV C G+S+P*RRL C IQRVASI + SC +CW L C+ V +
Sbjct: 13 G*DYCSDR*VSIPVPWYVPCIGHSVP*RRLPCFIQRVASISDWSCPLCWP*LCCVRVSEG 192
Query: 674 LATPDKFIWPCK*QRAARSYKAWVWSCGGNHWPDCCIPA*CHQEKNADGWLEPC*LYCYW 495
L P K IW C+* A S+KAW+WSCG NH D IP+*C QEK+ADGWLE C YCYW
Sbjct: 193 LGPPYKCIWTCR***VACSHKAWMWSCGWNHRADRGIPS*CCQEKDADGWLESCCFYCYW 372
Query: 494 ARQRSTPVQWHDRCIQEDCSS*RSWCSLQGSCAELSQGGALNCHCICDLRGCEGCARSRD 315
RQ +PVQW+D CI EDCS R WC +QGSCA+LS+GGA + HC C +RGCEGC+RSRD
Sbjct: 373 RRQSGSPVQWYD*CI*EDCSPRRIWCFVQGSCAQLSEGGAFHRHCFCHVRGCEGCSRSRD 552
Query: 314 ED 309
ED
Sbjct: 553 ED 558
Score = 250 bits (540), Expect(2) = 8e-071
Identities = 114/175 (65%), Positives = 127/175 (72%)
Frame = +1 / -2
Query: 331 HPSQPRKSQMQWQLRAPP*LSSAQDPCREHQLLHDEQSS*MHRSCHCTGVLLCLAQ*Q*S 510
HPSQPR Q QW+ +APP LS AQDPC +HQ+L EQSS*MH+S HCTG LCL Q*Q*
Sbjct: 536 HPSQPRT*QKQWRWKAPPSLSWAQDPCTKHQILRGEQSS*MHQSYHCTGEPLCLLQ*Q*K 357
Query: 511 QHGSNQPSAFFS**HQAGMQQSGQWFPPQLHTQAL*LRAARCHLQGQMNLSGVASL*GTH 690
QH SNQPSA FS* HQ GM +S WF PQLH QAL*L A +LQ QM+L G S T
Sbjct: 356 QHDSNQPSASFS*QHQEGMPRSALWFQPQLHIQAL*LHATHYYLQVQMHLYGGPSPSETR 177
Query: 691 IQRS*DQHMEQLRLQMEATLCIEHESLLHGRLYPVHETYHGTGREICLSEQ*SFP 855
Q+S* QH QL+ MEATLCI+H SLLHG L P+H TYHGTG E LSEQ*S+P
Sbjct: 176 TQQS*GQHKGQLQSLMEATLCIKHGSLLHGTLCPMHGTYHGTGMETYLSEQ*SYP 12
Score = 211 bits (456), Expect(3) = 2e-058
Identities = 102/160 (63%), Positives = 109/160 (68%)
Frame = -2 / +3
Query: 855 GEGSLFRQTNLPTSTVVCFMHWVQSTVKKAFVLYTKGGFHL*SELFHMLVSTSLYMSPSK 676
G G LFRQ +L TSTVVC MHW Q TVKKA VLYT+GGFH * EL ML T L S +
Sbjct: 12 GVGLLFRQISLHTSTVVCSMHWAQCTVKKASVLYTEGGFHQ*LELSLMLALTLLCTSL*R 191
Query: 675 TGYSRQIHLALQMTTSCT*LQGLGVELWREPLARLLHTRLMSSGEECRWLVGAMXXXXXL 496
TG S Q+HL LQ+ SC * QGL VELW EP R HT LM SGE CRWLVG M L
Sbjct: 192 TGSSVQMHLDLQIIMSCM*SQGLDVELWLEP*GRPWHTLLMLSGEGCRWLVGIMLLLLLL 371
Query: 495 GKAKKHSSTMA*SMHSGRLFVMKELVLSTRVLCRTQSRWC 376
KAK+ SSTM * MH GRLF K+LVL TRVLC TQ RWC
Sbjct: 372 EKAKRLSSTMV*LMHLGRLFATKDLVLCTRVLCPTQ*RWC 491
Score = 60.6 bits (126), Expect(3) = 9e-021
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = -1 / +2
Query: 829 KSPYQYRGMFHALGTVYREEGFRALYKGWLPSVIGVVPYVGLNFAVYESLKDWL 668
K+ QY GM A R EGF ALYKG +P+ + VVP + + F YE++KD L
Sbjct: 380 KAALQYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEAVKDVL 541
Score = 44.6 bits (91), Expect(2) = 2e-092
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = +1 / -3
Query: 181 KPERA*C*MEPRSYPSTRPAYKKNTTSQSLQK*QLKTA 294
+ ERA C*MEPRSY + P K SQ LQK*+L TA
Sbjct: 700 RAERALC*MEPRSYCPSTPLPNKKRNSQHLQK*KLITA 587
Score = 44.1 bits (90), Expect(2) = e-123
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -3 / +3
Query: 296 MAVFNCYFCRLWEVVFFL*AGRVEGYDRGSIQHQALS 186
+AV N YFCR E +F L G DRGSIQH+ALS
Sbjct: 585 LAVINFYFCRC*EFLFLLGRGVEGQ*DRGSIQHKALS 695
Score = 39.6 bits (80), Expect(2) = 2e-086
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 294 GRFQLLFL*ALGSCVFFVGRAGRRI*PRLHSASGPL 187
GR+QLLFL* L F + R I PRLHSA GPL
Sbjct: 587 GRYQLLFL*VLRVPFFVRQGSRRTIGPRLHSA*GPL 694
Score = 38.2 bits (77), Expect(3) = 9e-021
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -1 / +2
Query: 949 EDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRI 845
++ +L + RLG GA AG I + YP+D+VR R+
Sbjct: 227 DNNELHVVTRLGCGAVAGTIGQTVAYPLDVVRRRM 331
Score = 37.3 bits (75), Expect(2) = 2e-086
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3 / -2
Query: 189 EGLMLNGAAVISFYPPCLQKKHNFPKPTKIAVENG 293
EGLMLNGA+V+ + +K PTKI V+NG
Sbjct: 692 EGLMLNGASVLLSFYSPA*QKKELSTPTKIEVDNG 588
Score = 34.1 bits (68), Expect(3) = 9e-021
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1 / +2
Query: 1129 KYNGTVQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASKGIL 977
+Y G L ++R EG R L++G + +VP + F YE +L
Sbjct: 50 QYRGMFHALGTVYREEGFRALYRGWLPSVIGVVPYVGLNFAVYESLKDWVL 202
Score = 33.1 bits (66), Expect(2) = 8e-071
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2 / -1
Query: 188 RGPDAEWSRGHILLPALPTKKTQLPKAYKNSS*KRP 295
RGP AEWS G I+L K YKN S* RP
Sbjct: 693 RGPYAEWSLGPIVLLLPCLTKKGTLNTYKNRS**RP 586
Score = 24.9 bits (48), Expect(3) = 2e-058
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1 / +1
Query: 295 WPFSTAIFVG 266
WP ST+IFVG
Sbjct: 586 WPLSTSIFVG 615
Score = 23.5 bits (45), Expect(3) = 2e-058
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / +1
Query: 217 TAAPFSIRPS 188
T APFSIRPS
Sbjct: 664 TEAPFSIRPS 693
>gb|CN817300.1|CN817300 HRO4464_H04_O08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H04_O08, mRNA sequence
Length = 739
Score = 254 bits (550), Expect(3) = 6e-073
Identities = 107/118 (90%), Positives = 113/118 (95%)
Frame = -1 / -2
Query: 661 TNSFGLANDNELHVVTRLGCGAVAGTIGQTVAYPLDVIRRRMQMVGWSHADSIVTGQGKE 482
TN+F LA++NELHVVTRLGCGAVAGTIGQTVAYPLDV+RRRMQMVGW+HA SIVTG+GK
Sbjct: 738 TNAFELADNNELHVVTRLGCGAVAGTIGQTVAYPLDVVRRRMQMVGWNHAASIVTGEGKA 559
Query: 481 ALQYNGMIDAFRKTVRHEGVGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEMRI 308
ALQYNGMIDAFRKTVRHEG GALYKGLVPNSVKVVPSIAIAFVTYE VKDVLGVEMRI
Sbjct: 558 ALQYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEAVKDVLGVEMRI 385
Score = 197 bits (424), Expect(5) = 8e-059
Identities = 81/118 (68%), Positives = 94/118 (79%)
Frame = +2 / +1
Query: 308 YPHLYS*HILHNLVSHKCNGN*GHHLD*VRHKTLVESTNSFMTNSLPECIDHAIVLECFF 487
YPHLYS*+ILH+LV K NG+ HHL *V HKTLV+ST SF+ NSLP+CI+H IVLE F
Sbjct: 385 YPHLYS*NILHSLVRDKSNGDGRHHLH*VGHKTLVQSTKSFVANSLPKCINHTIVLESRF 564
Query: 488 ALPSNNRVSMAPTNHLHSSPDDIKRVCNSLANGSRHSSTPKPCNYVQLVVICKAK*IC 661
A SNNR SM PTNHLH SPD+IKRVC+ L GS HSST KPC+Y+QL++ICK K IC
Sbjct: 565 AFSSNNRSSMIPTNHLHPSPDNIKRVCHGLPYGSSHSSTSKPCDYMQLIIICKFKCIC 738
Score = 196 bits (423), Expect(3) = 8e-055
Identities = 75/117 (64%), Positives = 88/117 (75%)
Frame = -3 / -1
Query: 659 KFIWPCK*QRAARSYKAWVWSCGGNHWPDCCIPA*CHQEKNADGWLEPC*LYCYWARQRS 480
K I C+* A S+KAW+WSCG NH D IP+*C QEK+ADGWLE C YCYW RQ
Sbjct: 736 KCI*TCR***VACSHKAWMWSCGWNHRADRGIPS*CCQEKDADGWLESCCFYCYWRRQSG 557
Query: 479 TPVQWHDRCIQEDCSS*RSWCSLQGSCAELSQGGALNCHCICDLRGCEGCARSRDED 309
+PVQW+D CI EDCS R WC +QGSCA+LS+GGA + HC C +RGCEGC+RSRDED
Sbjct: 556 SPVQWYD*CI*EDCSPRRIWCFVQGSCAQLSEGGAFHRHCFCHVRGCEGCSRSRDED 386
Score = 183 bits (394), Expect(2) = 1e-048
Identities = 81/118 (68%), Positives = 87/118 (73%)
Frame = +3 / +2
Query: 309 ILIXXXXXXXXXXXXXNAMAIEGTTLTEFGTRPL*RAPTPS*RTVFLNASIMPLYWSASL 488
ILI AMA+EGTT TE GTRPL +AP PS RTVFLNASI+PLYW A+L
Sbjct: 386 ILISTPRTSFTASYVTKAMAMEGTTFTELGTRPLYKAPNPSWRTVFLNASIIPLYWRAAL 565
Query: 489 PCPVTIESAWLQPTICILLLMTSSGYATVWPMVPATAPHPSLVTTCSSLSFARPNEFV 662
P PVTIE+A QPTICILLL TS GYATV PMVPATAPHPSLVTTC+SL A N FV
Sbjct: 566 PSPVTIEAA*FQPTICILLLTTSRGYATVCPMVPATAPHPSLVTTCNSLLSASSNAFV 739
Score = 167 bits (360), Expect(2) = 1e-043
Identities = 74/110 (67%), Positives = 82/110 (74%)
Frame = +1 / +3
Query: 331 HPSQPRKSQMQWQLRAPP*LSSAQDPCREHQLLHDEQSS*MHRSCHCTGVLLCLAQ*Q*S 510
HPSQPR Q QW+ +APP LS AQDPC +HQ+L EQSS*MH+S HCTG LCL Q*Q*
Sbjct: 408 HPSQPRT*QKQWRWKAPPSLSWAQDPCTKHQILRGEQSS*MHQSYHCTGEPLCLLQ*Q*K 587
Query: 511 QHGSNQPSAFFS**HQAGMQQSGQWFPPQLHTQAL*LRAARCHLQGQMNL 660
QH SNQPSA FS* HQ GM +S WF PQLH QAL*L A +LQ QM+L
Sbjct: 588 QHDSNQPSASFS*QHQEGMPRSALWFQPQLHIQAL*LHATHYYLQVQMHL 737
Score = 131 bits (280), Expect(3) = 1e-033
Identities = 61/95 (64%), Positives = 65/95 (68%)
Frame = -2 / -3
Query: 660 QIHLALQMTTSCT*LQGLGVELWREPLARLLHTRLMSSGEECRWLVGAMXXXXXLGKAKK 481
Q+HL LQ+ SC * QGL VELW EP R HT LM SGE CRWLVG M L KAK+
Sbjct: 737 QMHLNLQIIMSCM*SQGLDVELWLEP*GRPWHTLLMLSGEGCRWLVGIMLLLLLLEKAKR 558
Query: 480 HSSTMA*SMHSGRLFVMKELVLSTRVLCRTQSRWC 376
SSTM * MH GRLF K+LVL TRVLC TQ RWC
Sbjct: 557 LSSTMV*LMHLGRLFATKDLVLCTRVLCPTQ*RWC 453
Score = 29.5 bits (58), Expect(5) = 8e-059
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1 / +3
Query: 181 KPERA*C*MEPRSYPSTRPAYKK 249
+ ERA C*MEPRSY + P K
Sbjct: 243 RAERALC*MEPRSYCPSTPLPNK 311
Score = 28.1 bits (55), Expect(3) = 6e-073
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / -3
Query: 296 MAVFNCYFCRLWEVVFFL*AG 234
+AV N YFCR E +FF+ G
Sbjct: 359 LAVINFYFCRC*EFLFFVRQG 297
Score = 26.3 bits (51), Expect(3) = 6e-073
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / -1
Query: 218 DRGSIQHQALS 186
DRGSIQH+ALS
Sbjct: 280 DRGSIQHKALS 248
Score = 26.3 bits (51), Expect(3) = 8e-055
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / -1
Query: 295 WPFSTAIFVGFGKLCFFCRQG 233
WP ST+IFVG F +G
Sbjct: 358 WPLSTSIFVGVESSFFLLGRG 296
Score = 25.8 bits (50), Expect(2) = 1e-048
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 188 RGPDAEWSRGHILL 229
RGP AEWS G I+L
Sbjct: 250 RGPYAEWSLGPIVL 291
Score = 25.4 bits (49), Expect(3) = 8e-055
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 228 RRI*PRLHSASGPL 187
R I PRLHSA GPL
Sbjct: 290 RTIGPRLHSA*GPL 249
Score = 24.9 bits (48), Expect(5) = 8e-059
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3 / +3
Query: 234 PCLQKKHNFPKPTKIAVENG 293
P KK PTKI V+NG
Sbjct: 297 PLPNKKKELSTPTKIEVDNG 356
Score = 24.4 bits (47), Expect(2) = 1e-043
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 189 EGLMLNGAAVI 221
EGLMLNGA+V+
Sbjct: 251 EGLMLNGASVL 283
Score = 23.5 bits (45), Expect(3) = 1e-033
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -2
Query: 217 TAAPFSIRPS 188
T APFSIRPS
Sbjct: 279 TEAPFSIRPS 250
Score = 23.5 bits (45), Expect(5) = 8e-059
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / +1
Query: 125 ALQPTYYF 148
ALQPTYYF
Sbjct: 163 ALQPTYYF 186
Score = 22.6 bits (43), Expect(5) = 8e-059
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3 / +1
Query: 21 NQLLAARSTALSSKISVH 74
NQLLAA S IS+H
Sbjct: 64 NQLLAAHSMQAYVSISIH 117
Score = 22.1 bits (42), Expect(3) = 1e-033
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 294 GRFQLLFL*AL 262
GR+QLLFL* L
Sbjct: 357 GRYQLLFL*VL 325
>gb|BE439126.1|BE439126 CDO202_WHE2C0122F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO202_WHE2C0122, mRNA sequence
Length = 304
Score = 223 bits (482), Expect = 4e-059
Identities = 90/101 (89%), Positives = 98/101 (97%)
Frame = -1 / -1
Query: 703 NFAVYESLKDWLLQTNSFGLANDNELHVVTRLGCGAVAGTIGQTVAYPLDVIRRRMQMVG 524
NFAVYESLKDW+L+TN+FGLA++NELHVVTRLGCGAVAGTIGQTVAYPLDV+RRRMQMVG
Sbjct: 304 NFAVYESLKDWVLRTNAFGLADNNELHVVTRLGCGAVAGTIGQTVAYPLDVVRRRMQMVG 125
Query: 523 WSHADSIVTGQGKEALQYNGMIDAFRKTVRHEGVGALYKGL 401
W+HA SIVTG+GK ALQYNGMIDAFRKTVRHEG GALYKGL
Sbjct: 124 WNHAASIVTGEGKAALQYNGMIDAFRKTVRHEGFGALYKGL 2
Score = 177 bits (382), Expect = 3e-045
Identities = 77/100 (77%), Positives = 83/100 (83%)
Frame = +3 / +3
Query: 402 RPL*RAPTPS*RTVFLNASIMPLYWSASLPCPVTIESAWLQPTICILLLMTSSGYATVWP 581
RPL +AP PS RTVFLNASI+PLYW A+LP PVTIE+A QPTICILLL TS GYATV P
Sbjct: 3 RPLYKAPNPSWRTVFLNASIIPLYWRAALPSPVTIEAA*FQPTICILLLTTSRGYATVCP 182
Query: 582 MVPATAPHPSLVTTCSSLSFARPNEFVWSSQSLRDSYTAK 701
MVPATAPHPSLVTTC+SL A PN FV +QS RDSYTAK
Sbjct: 183 MVPATAPHPSLVTTCNSLLSASPNAFVRRTQSFRDSYTAK 302
Score = 164 bits (353), Expect = 3e-041
Identities = 66/101 (65%), Positives = 81/101 (80%)
Frame = +2 / +2
Query: 401 KTLVESTNSFMTNSLPECIDHAIVLECFFALPSNNRVSMAPTNHLHSSPDDIKRVCNSLA 580
KTLV+ST SF+ NSLP+CI+H IVLE FA SNNR SM PTNHLH SPD+IKRVC+ L
Sbjct: 2 KTLVQSTKSFVANSLPKCINHTIVLESRFAFSSNNRSSMIPTNHLHPSPDNIKRVCHGLP 181
Query: 581 NGSRHSSTPKPCNYVQLVVICKAK*ICLE*PVFEGLIYSEV 703
GS HSST KPC+Y+QL++ICK+K IC E PV + L++S+V
Sbjct: 182 YGSSHSSTSKPCDYMQLIIICKSKCICTEDPVLQRLVHSKV 304
Score = 149 bits (320), Expect = 9e-037
Identities = 59/100 (59%), Positives = 69/100 (69%)
Frame = -3 / -3
Query: 701 LRCI*VPQRLATPDKFIWPCK*QRAARSYKAWVWSCGGNHWPDCCIPA*CHQEKNADGWL 522
L C+ V + L P K IW C+* A S+KAW+WSCG NH D IP+*C QEK+ADGWL
Sbjct: 302 LCCVRVSEGLGPPYKCIWTCR***VACSHKAWMWSCGWNHRADRGIPS*CCQEKDADGWL 123
Query: 521 EPC*LYCYWARQRSTPVQWHDRCIQEDCSS*RSWCSLQGS 402
E C YCYW RQ +PVQW+D CI EDCS R WC +QGS
Sbjct: 122 ESCCFYCYWRRQSGSPVQWYD*CI*EDCSPRRIWCFVQGS 3
Score = 137 bits (294), Expect = 3e-033
Identities = 64/101 (63%), Positives = 71/101 (70%)
Frame = +1 / +1
Query: 400 QDPCREHQLLHDEQSS*MHRSCHCTGVLLCLAQ*Q*SQHGSNQPSAFFS**HQAGMQQSG 579
QDPC +HQ+L EQSS*MH+S HCTG LCL Q*Q* QH SNQPSA FS* HQ GM +S
Sbjct: 1 QDPCTKHQILRGEQSS*MHQSYHCTGEPLCLLQ*Q*KQHDSNQPSASFS*QHQEGMPRSA 180
Query: 580 QWFPPQLHTQAL*LRAARCHLQGQMNLSGVASL*GTHIQRS 702
WF PQLH QAL*L A +LQ QM+L G S T Q+S
Sbjct: 181 LWFQPQLHIQAL*LHATHYYLQVQMHLYGGPSPSETRTQQS 303
Score = 119 bits (255), Expect = 8e-028
Identities = 61/101 (60%), Positives = 66/101 (65%)
Frame = -2 / -2
Query: 702 TSLYMSPSKTGYSRQIHLALQMTTSCT*LQGLGVELWREPLARLLHTRLMSSGEECRWLV 523
T L S +TG S Q+HL LQ+ SC * QGL VELW EP R HT LM SGE CRWLV
Sbjct: 303 TLLCTSL*RTGSSVQMHLDLQIIMSCM*SQGLDVELWLEP*GRPWHTLLMLSGEGCRWLV 124
Query: 522 GAMXXXXXLGKAKKHSSTMA*SMHSGRLFVMKELVLSTRVL 400
G M L KAK+ SSTM * MH GRLF K+LVL TRVL
Sbjct: 123 GIMLLLLLLEKAKRLSSTMV*LMHLGRLFATKDLVLCTRVL 1
>gb|AA231639.1|AA231639 CDO202.F cDNA from oat Avena sativa cDNA clone CDO202, mRNA
sequence
Length = 317
Score = 214 bits (461), Expect = 3e-056
Identities = 88/103 (85%), Positives = 97/103 (94%)
Frame = -1 / -3
Query: 685 SLKDWLLQTNSFGLANDNELHVVTRLGCGAVAGTIGQTVAYPLDVIRRRMQMVGWSHADS 506
SLKDW+L+TN+FGLA++NELHVVTRLGCGAVAGTIGQTVAYPLDV+RRRMQMVGW+HA S
Sbjct: 315 SLKDWVLRTNAFGLADNNELHVVTRLGCGAVAGTIGQTVAYPLDVVRRRMQMVGWNHAAS 136
Query: 505 IVTGQGKEALQYNGMIDAFRKTVRHEGVGALYKGLVPNSVKVV 377
IVTG+GK ALQ NGMIDAFRKTV HEG GALYK LVPNSVKV+
Sbjct: 135 IVTGEGKAALQNNGMIDAFRKTVSHEGFGALYKVLVPNSVKVM 7
Score = 170 bits (366), Expect = 4e-043
Identities = 74/102 (72%), Positives = 81/102 (79%)
Frame = +3 / +2
Query: 381 TLTEFGTRPL*RAPTPS*RTVFLNASIMPLYWSASLPCPVTIESAWLQPTICILLLMTSS 560
T TE GTR L +AP PS TVFLNASI+PL+W A+LP PVTIE+A QPTICILLL TS
Sbjct: 11 TFTELGTRTLYKAPNPSWETVFLNASIIPLFWRAALPSPVTIEAA*FQPTICILLLTTSR 190
Query: 561 GYATVWPMVPATAPHPSLVTTCSSLSFARPNEFVWSSQSLRD 686
GYATV PMVPATAPHPSLVTTC+SL A PN FV +QS RD
Sbjct: 191 GYATVCPMVPATAPHPSLVTTCNSLLSASPNAFVRRTQSFRD 316
Score = 165 bits (354), Expect = 2e-041
Identities = 67/102 (65%), Positives = 80/102 (78%)
Frame = +2 / +1
Query: 377 HHLD*VRHKTLVESTNSFMTNSLPECIDHAIVLECFFALPSNNRVSMAPTNHLHSSPDDI 556
H+L *V HK LV+ST SF+ NSLP+CI+H IVLE FA SNNR SM PTNHLH SPD+I
Sbjct: 7 HYLH*VGHKNLVQSTKSFVGNSLPKCINHTIVLESRFAFSSNNRSSMIPTNHLHPSPDNI 186
Query: 557 KRVCNSLANGSRHSSTPKPCNYVQLVVICKAK*ICLE*PVFE 682
KRVC+ L GS HSST KPC+Y+QL++ICK+K IC E PV +
Sbjct: 187 KRVCHGLPYGSSHSSTSKPCDYMQLIIICKSKCICTEDPVLQ 312
Score = 154 bits (330), Expect = 4e-038
Identities = 60/102 (58%), Positives = 71/102 (69%)
Frame = -3 / -2
Query: 686 VPQRLATPDKFIWPCK*QRAARSYKAWVWSCGGNHWPDCCIPA*CHQEKNADGWLEPC*L 507
V + L P K IW C+* A S+KAW+WSCG NH D IP+*C QEK+ADGWLE C
Sbjct: 316 VSEGLGPPYKCIWTCR***VACSHKAWMWSCGWNHRADRGIPS*CCQEKDADGWLESCCF 137
Query: 506 YCYWARQRSTPVQWHDRCIQEDCSS*RSWCSLQGSCAELSQG 381
YCYW RQ +P QW+D CI EDC R WC +QGSCA+LS+G
Sbjct: 136 YCYWRRQSGSPEQWYD*CI*EDCFPRRIWCFVQGSCAQLSEG 11
Score = 135 bits (289), Expect = 2e-032
Identities = 61/95 (64%), Positives = 70/95 (73%)
Frame = +1 / +3
Query: 382 P*LSSAQDPCREHQLLHDEQSS*MHRSCHCTGVLLCLAQ*Q*SQHGSNQPSAFFS**HQA 561
P LS AQ+PC +HQ+L +QSS*MH+S HC+G LCL Q*Q* QH SNQPSA FS* HQ
Sbjct: 12 PSLSWAQEPCTKHQILRGKQSS*MHQSYHCSGEPLCLLQ*Q*KQHDSNQPSASFS*QHQE 191
Query: 562 GMQQSGQWFPPQLHTQAL*LRAARCHLQGQMNLSG 666
GM +S WF PQLH QAL*L A +LQ QM+L G
Sbjct: 192 GMPRSALWFQPQLHIQAL*LHATHYYLQVQMHLYG 296
Score = 124 bits (265), Expect = 3e-029
Identities = 61/101 (60%), Positives = 66/101 (65%)
Frame = -2 / -1
Query: 678 KTGYSRQIHLALQMTTSCT*LQGLGVELWREPLARLLHTRLMSSGEECRWLVGAMXXXXX 499
+TG S Q+HL LQ+ SC * QGL VELW EP R HT LM SGE CRWLVG M
Sbjct: 308 RTGSSVQMHLDLQIIMSCM*SQGLDVELWLEP*GRPWHTLLMLSGEGCRWLVGIMLLLLL 129
Query: 498 LGKAKKHSSTMA*SMHSGRLFVMKELVLSTRVLCRTQSRWC 376
L KAK+ S TM * MH GRLF K+LVL TR LC TQ R C
Sbjct: 128 LEKAKRLSRTMV*LMHLGRLFPTKDLVLCTRFLCPTQ*R*C 6
>gb|AA231908.1|AA231908 CDO202.R cDNA from oat Avena sativa cDNA clone CDO202, mRNA sequence
Length = 178
Score = 112 bits (239), Expect(2) = 6e-028
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = -1 / +1
Query: 1126 YNGTVQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQ 995
YNGTVQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQ
Sbjct: 1 YNGTVQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQ 132
Score = 92.7 bits (196), Expect(2) = 2e-021
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = +3 / -3
Query: 996 CS*LKNFTAEFGTILAQLVPLPLKSPRRPSVLQIYLRP*TVPL 1124
CS*LKNFTAEFGTILAQLVPLPLKSPRRPSVL IY P*TVPL
Sbjct: 131 CS*LKNFTAEFGTILAQLVPLPLKSPRRPSVLHIYFSP*TVPL 3
Score = 27.2 bits (53), Expect(2) = 6e-028
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 992 VKGNSVGLPSTDW 954
+KG SV LP+TDW
Sbjct: 134 IKGCSVSLPTTDW 172
Score = 24.9 bits (48), Expect(2) = 2e-021
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 948 SSPVC*R*AHRIPFD 992
SSPVC R* +R P D
Sbjct: 178 SSPVCCR*RYRTPLD 134
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 16,491,162
Number of Sequences: 8143
Number of extensions: 269948
Number of successful extensions: 1354
Number of sequences better than 1.0e-020: 5
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 461912490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)