TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U36433.1|ATU36433 Arabidopsis thaliana pattern-formation... 265 1e-069
gb|U56140.1|ATU56140 Arabidopsis thaliana EMB30 mRNA, compl... 265 1e-069
gb|U56141.1|ATU56141 Arabidopsis thaliana EMB30 gene, compl... 265 1e-069
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 265 1e-069
gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 ... 265 1e-069
gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis tha... 265 1e-069
dbj|AK220827.1| Arabidopsis thaliana mRNA for putative patt... 265 1e-069
ref|NM_101264.3| Arabidopsis thaliana GN (GNOM) AT1G13980 (... 265 1e-069
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 265 1e-069
gb|U36432.1|ATU36432 Arabidopsis thaliana pattern-formation... 264 2e-069
dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosom... 215 9e-055
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 215 9e-055
ref|NM_123312.2| Arabidopsis thaliana unknown protein AT5G3... 215 9e-055
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 215 9e-055
gb|BH857557.1|BH857557 SALK_045424.55.00.x Arabidopsis thal... 156 2e-050
gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13 82 9e-033
ref|NM_121966.1| Arabidopsis thaliana unknown protein AT5G1... 82 9e-033
>gb|U36433.1|ATU36433 Arabidopsis thaliana pattern-formation (GNOM) gene, complete cds
Length = 6686
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 3898 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 4077
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 4078 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 4257
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 4258 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 4437
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 4438 AADESEHSSEQGQGK 4482
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 4442 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 4263
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 4262 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 4083
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 4082 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 3927
>gb|U56140.1|ATU56140 Arabidopsis thaliana EMB30 mRNA, complete cds
Length = 4697
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 2425 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 2604
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 2605 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 2784
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 2785 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 2964
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 2965 AADESEHSSEQGQGK 3009
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 2969 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 2790
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 2789 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 2610
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 2609 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 2454
>gb|U56141.1|ATU56141 Arabidopsis thaliana EMB30 gene, complete cds
Length = 7512
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +2
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 4781 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 4960
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 4961 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 5140
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 5141 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 5320
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 5321 AADESEHSSEQGQGK 5365
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 5325 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 5146
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 5145 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 4966
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 4965 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 4810
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +3
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 4792065 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 4792244
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 4792245 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 4792424
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 4792425 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 4792604
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 4792605 AADESEHSSEQGQGK 4792649
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -3
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 4792609 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 4792430
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 4792429 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 4792250
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 4792249 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 4792094
>gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete
sequence
Length = 112126
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 35296 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 35475
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 35476 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 35655
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 35656 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 35835
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 35836 AADESEHSSEQGQGK 35880
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -3
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 35840 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 35661
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 35660 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 35481
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 35480 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 35325
>gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis thaliana BAC F16A14 from chromosome I,
complete sequence
Length = 99547
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +3
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 67506 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 67685
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 67686 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 67865
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 67866 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 68045
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 68046 AADESEHSSEQGQGK 68090
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 68050 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 67871
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 67870 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 67691
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 67690 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 67535
>dbj|AK220827.1| Arabidopsis thaliana mRNA for putative pattern formation protein
EMB30, complete cds, clone: RAFL22-34-L14
Length = 4037
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +2
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 1721 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 1900
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 1901 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 2080
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 2081 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 2260
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 2261 AADESEHSSEQGQGK 2305
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -3
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 2265 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 2086
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 2085 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 1906
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 1905 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 1750
>ref|NM_101264.3| Arabidopsis thaliana GN (GNOM) AT1G13980 (GN) mRNA, complete cds
Length = 4835
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 2425 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 2604
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 2605 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 2784
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 2785 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 2964
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 2965 AADESEHSSEQGQGK 3009
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 2969 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 2790
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 2789 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 2610
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 2609 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 2454
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 265 bits (573), Expect = 1e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +2
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 4792241 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 4792420
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 4792421 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 4792600
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 4792601 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 4792780
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 4792781 AADESEHSSEQGQGK 4792825
Score = 143 bits (307), Expect = 5e-033
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -3
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 4792785 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSS 4792606
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 4792605 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 4792426
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 4792425 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 4792270
>gb|U36432.1|ATU36432 Arabidopsis thaliana pattern-formation (GNOM) mRNA, complete cds
Length = 4794
Score = 264 bits (571), Expect = 2e-069
Identities = 110/195 (56%), Positives = 140/195 (71%)
Frame = -2 / +2
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
EL I EQ AG E + SRW+ L SK + YI S +LDHDMF++M+
Sbjct: 2384 ELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPYILADSRAYLDHDMFAIMS 2563
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 2564 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 2743
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
+D+PV AFG+D KARMAT +FTIA YGD+IR+GWRNI+DCILRLHK+GLLP + D
Sbjct: 2744 SVDEPVLAFGDDGKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASD 2923
Query: 130 TADDQDSSSKSLPGK 86
AD+ + SS+ GK
Sbjct: 2924 AADESEHSSEQGQGK 2968
Score = 142 bits (305), Expect = 1e-032
Identities = 81/172 (47%), Positives = 92/172 (53%)
Frame = +3 / -1
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSS 305
A S GRSP LC+ KIQS MFL P+R+*SP A+VK VAILA SSPNA TGSS
Sbjct: 2928 AASLATRAGRSPSLCSRKIQSNMFLQPVRI*SPYLFAMVKIVIVAILAFPSSPNARTGSS 2749
Query: 306 M*EVVNKVVNLDXXXXXXXXXXXXXXNAASFATDRKPSMHPVRTSSCSTLSKTTETAATV 485
+ N+VVNL A A + PSMH TSSCS SKTT+ AA V
Sbjct: 2748 TDDGFNRVVNLQRETTRSSSTSSR**QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMV 2569
Query: 486 GPAITENMS*SRNG*ELQAIYIDXLFDXXXRXTQRLKXXSXXPAXCSXXXLI 641
GP + N+S SR E IY FD + QRL S PA CS LI
Sbjct: 2568 GPDMIANISWSR*ALESARIYGAVFFDLCIKSIQRLGVISGKPAPCSGVVLI 2413
>dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL8
Length = 83450
Score = 215 bits (465), Expect = 9e-055
Identities = 90/201 (44%), Positives = 126/201 (62%)
Frame = -2 / +2
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
E+ I ++ G + SRW+ + SK S YI C + LD DMF +++
Sbjct: 73406 EIYHSIRHSEIQMDEDKGTGFQLMTASRWISVIYKSKETSPYIQCDAASHLDRDMFYIVS 73585
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA SVVF+ E E+VL CIDG L++AKL+A+YHL VL+DLVV+L KFT
Sbjct: 73586 GPTIAATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPL 73765
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
D+ V GED +ARMATEAVF IA YGD+I +GW+NI++C+L L+K+ +LP + D
Sbjct: 73766 SADEAVLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASD 73945
Query: 130 TADDQDSSSKSLPGKLASSAP 68
ADD + S+ +L + S+ P
Sbjct: 73946 AADDPELSTSNLEQEKPSANP 74008
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 215 bits (465), Expect = 9e-055
Identities = 90/201 (44%), Positives = 126/201 (62%)
Frame = -2 / +3
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
E+ I ++ G + SRW+ + SK S YI C + LD DMF +++
Sbjct: 14544348 EIYHSIRHSEIQMDEDKGTGFQLMTASRWISVIYKSKETSPYIQCDAASHLDRDMFYIVS 14544527
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA SVVF+ E E+VL CIDG L++AKL+A+YHL VL+DLVV+L KFT
Sbjct: 14544528 GPTIAATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPL 14544707
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
D+ V GED +ARMATEAVF IA YGD+I +GW+NI++C+L L+K+ +LP + D
Sbjct: 14544708 SADEAVLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASD 14544887
Query: 130 TADDQDSSSKSLPGKLASSAP 68
ADD + S+ +L + S+ P
Sbjct: 14544888 AADDPELSTSNLEQEKPSANP 14544950
>ref|NM_123312.2| Arabidopsis thaliana unknown protein AT5G39500 mRNA, complete cds
Length = 4467
Score = 215 bits (465), Expect = 9e-055
Identities = 90/201 (44%), Positives = 126/201 (62%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
E+ I ++ G + SRW+ + SK S YI C + LD DMF +++
Sbjct: 2203 EIYHSIRHSEIQMDEDKGTGFQLMTASRWISVIYKSKETSPYIQCDAASHLDRDMFYIVS 2382
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA SVVF+ E E+VL CIDG L++AKL+A+YHL VL+DLVV+L KFT
Sbjct: 2383 GPTIAATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPL 2562
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
D+ V GED +ARMATEAVF IA YGD+I +GW+NI++C+L L+K+ +LP + D
Sbjct: 2563 SADEAVLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASD 2742
Query: 130 TADDQDSSSKSLPGKLASSAP 68
ADD + S+ +L + S+ P
Sbjct: 2743 AADDPELSTSNLEQEKPSANP 2805
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 215 bits (465), Expect = 9e-055
Identities = 90/201 (44%), Positives = 126/201 (62%)
Frame = -2 / +1
Query: 670 ELXXXXXXXXIXXXXEQXAGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMA 491
E+ I ++ G + SRW+ + SK S YI C + LD DMF +++
Sbjct: 15835009 EIYHSIRHSEIQMDEDKGTGFQLMTASRWISVIYKSKETSPYIQCDAASHLDRDMFYIVS 15835188
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA SVVF+ E E+VL CIDG L++AKL+A+YHL VL+DLVV+L KFT
Sbjct: 15835189 GPTIAATSVVFEQAEQEDVLRRCIDGLLAIAKLSAYYHLNSVLDDLVVSLCKFTPFFAPL 15835368
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGD 131
D+ V GED +ARMATEAVF IA YGD+I +GW+NI++C+L L+K+ +LP + D
Sbjct: 15835369 SADEAVLVLGEDARARMATEAVFLIANKYGDYISAGWKNILECVLSLNKLHILPDHIASD 15835548
Query: 130 TADDQDSSSKSLPGKLASSAP 68
ADD + S+ +L + S+ P
Sbjct: 15835549 AADDPELSTSNLEQEKPSANP 15835611
>gb|BH857557.1|BH857557 SALK_045424.55.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_045424.55.00.x,
DNA sequence
Length = 420
Score = 156 bits (336), Expect(2) = 2e-050
Identities = 63/96 (65%), Positives = 80/96 (83%)
Frame = -2 / +3
Query: 490 GPTVAAVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLGDVLNDLVVALSKFTTLLTTS 311
GPT+AA+SVVFD+ EHE+V CIDGFL++AK++A +HL DVL+DLVV+L KFTTLL S
Sbjct: 3 GPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS 182
Query: 310 YIDDPVTAFGEDTKARMATEAVFTIATVYGDHIRSG 203
+D+PV AFG+D KARMAT +FTIA YGD+IR+G
Sbjct: 183 SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTG 290
Score = 88.6 bits (187), Expect(2) = 4e-021
Identities = 47/97 (48%), Positives = 55/97 (56%)
Frame = +3 / -3
Query: 201 HPLRM*SP*TVAIVKTASVAILALVSSPNAVTGSSM*EVVNKVVNLDXXXXXXXXXXXXX 380
+P+R+*SP A+VK VAILA SSPNA TGSS + N+VVNL
Sbjct: 292 NPVRI*SPYLFAMVKIVIVAILAFASSPNARTGSSTDDGFNRVVNLQRETTRSSSTSSR* 113
Query: 381 XNAASFATDRKPSMHPVRTSSCSTLSKTTETAATVGP 491
A A + PSMH TSSCS SKTT+ AA VGP
Sbjct: 112 *QAEILAIAKNPSMHVW*TSSCSAWSKTTDMAAMVGP 2
Score = 64.8 bits (135), Expect(2) = 2e-050
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = -2 / +1
Query: 205 GWRNIIDCILRLHKIGLLPGPLTGDTADDQDSSSKSLPGK 86
GWRNI+DCILRLHK+GLLP + D AD+ + SS+ GK
Sbjct: 289 GWRNILDCILRLHKLGLLPARVASDAADESEHSSEQGQGK 408
Score = 35.0 bits (70), Expect(2) = 4e-021
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 126 AVSPVRGPGRSPILCNLKIQSIMFLHP 206
A S GRSP LC+ KIQS MFL P
Sbjct: 368 AASLATRAGRSPSLCSRKIQSNMFLQP 288
>gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13
Length = 100592
Score = 81.7 bits (172), Expect(3) = 9e-033
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = -2 / -2
Query: 304 DDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGDTA 125
++ + AF D K RMAT AVFT+A +GD IR GWRNI+DC+L+L K+ LLP +
Sbjct: 8635 EETLFAFSHDMKPRMATLAVFTLANTFGDSIRGGWRNIVDCLLKLRKLQLLPQSVIEFEI 8456
Query: 124 DDQDSSSKS 98
++++ S+S
Sbjct: 8455 NEENGGSES 8429
Score = 68.4 bits (143), Expect(3) = 9e-033
Identities = 26/78 (33%), Positives = 47/78 (60%)
Frame = -2 / -2
Query: 616 AGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMAGPTVAAVSVVFDNVEHEE 437
+G E + +RW+ L +K + C + DMF+ +AGP++AAVS F++ + +E
Sbjct: 8947 SGPVEMNPNRWIELMNRTKTTQPFSLCQFDRRIGRDMFATIAGPSIAAVSAFFEHSDDDE 8768
Query: 436 VLTGCIDGFLSVAKLAAF 383
VL C+D +S+A++A +
Sbjct: 8767 VLHECVDAMISIARVAQY 8714
Score = 30.4 bits (60), Expect(3) = 9e-033
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2 / -2
Query: 388 AFYHLGDVLNDLVVALSKFTTLL 320
A Y L D+L++L+ + KFTTLL
Sbjct: 8722 AQYGLEDILDELIASFCKFTTLL 8654
>ref|NM_121966.1| Arabidopsis thaliana unknown protein AT5G19610 mRNA, complete cds
Length = 4128
Score = 81.7 bits (172), Expect(3) = 9e-033
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = -2 / +1
Query: 304 DDPVTAFGEDTKARMATEAVFTIATVYGDHIRSGWRNIIDCILRLHKIGLLPGPLTGDTA 125
++ + AF D K RMAT AVFT+A +GD IR GWRNI+DC+L+L K+ LLP +
Sbjct: 2362 EETLFAFSHDMKPRMATLAVFTLANTFGDSIRGGWRNIVDCLLKLRKLQLLPQSVIEFEI 2541
Query: 124 DDQDSSSKS 98
++++ S+S
Sbjct: 2542 NEENGGSES 2568
Score = 68.4 bits (143), Expect(3) = 9e-033
Identities = 26/78 (33%), Positives = 47/78 (60%)
Frame = -2 / +1
Query: 616 AGXXEXSFSRWVXLXXXSKXXSMYIACSSYPFLDHDMFSVMAGPTVAAVSVVFDNVEHEE 437
+G E + +RW+ L +K + C + DMF+ +AGP++AAVS F++ + +E
Sbjct: 2050 SGPVEMNPNRWIELMNRTKTTQPFSLCQFDRRIGRDMFATIAGPSIAAVSAFFEHSDDDE 2229
Query: 436 VLTGCIDGFLSVAKLAAF 383
VL C+D +S+A++A +
Sbjct: 2230 VLHECVDAMISIARVAQY 2283
Score = 30.4 bits (60), Expect(3) = 9e-033
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2 / +1
Query: 388 AFYHLGDVLNDLVVALSKFTTLL 320
A Y L D+L++L+ + KFTTLL
Sbjct: 2275 AQYGLEDILDELIASFCKFTTLL 2343
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,163,257,106
Number of Sequences: 1013581
Number of extensions: 14359890
Number of successful extensions: 111334
Number of sequences better than 1.0e-020: 21
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 45304434736
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)