TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY133724.1| Arabidopsis thaliana unknown protein (At1g26... 169 8e-041
ref|NM_102445.2| Arabidopsis thaliana transferase, transfer... 169 8e-041
gb|CW835798.1|CW835798 ET6298.Ds5.06.13.00.b.526 Arabidopsi... 129 1e-038
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 129 7e-036
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 129 7e-036
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 129 8e-029
gb|AV797563.1|AV797563 AV797563 RAFL9 Arabidopsis thaliana ... 127 2e-028
gb|AV555811.1|AV555811 AV555811 Arabidopsis thaliana green ... 127 2e-028
gb|BP620947.1|BP620947 BP620947 RAFL16 Arabidopsis thaliana... 127 2e-028
gb|AF361640.1| Arabidopsis thaliana AT3g06440/F24P17_7 mRNA... 127 2e-028
ref|NM_111519.2| Arabidopsis thaliana transferase, transfer... 127 2e-028
gb|BP789189.1|BP789189 BP789189 RAFL7 Arabidopsis thaliana ... 127 3e-028
gb|BT002218.1| Arabidopsis thaliana At3g06440/F24P17_7 mRNA... 125 1e-027
gb|AY305277.1| Arabidopsis thaliana putative beta 1, 3 gala... 124 3e-027
gb|BP777811.1|BP777811 BP777811 RAFL7 Arabidopsis thaliana ... 122 9e-027
gb|BH170042.1|BH170042 SALK_002287 Arabidopsis thaliana TDN... 118 2e-025
gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome II... 94 2e-024
gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots ... 107 2e-024
gb|CW839552.1|CW839552 GT8529.Ds5.04.27.01.JU92.b.413 Arabi... 94 3e-024
gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA... 106 4e-024
ref|NM_106138.2| Arabidopsis thaliana transferase, transfer... 106 4e-024
emb|BX824434.1|CNS0A7G0 Arabidopsis thaliana Full-length cD... 91 4e-024
gb|AY305276.1| Arabidopsis thaliana putative beta 1, 3 gala... 89 7e-023
gb|AV800587.1|AV800587 AV800587 RAFL9 Arabidopsis thaliana ... 109 9e-023
gb|AV813783.1|AV813783 AV813783 RAFL9 Arabidopsis thaliana ... 93 1e-022
gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-... 105 8e-022
emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cD... 105 8e-022
emb|CQ804810.1| Sequence 1221 from Patent WO2004035798 105 8e-022
ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase... 105 8e-022
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 79 7e-021
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 79 8e-021
>gb|AY133724.1| Arabidopsis thaliana unknown protein (At1g26810) mRNA, complete cds
Length = 2454
Score = 169 bits (363), Expect = 8e-041
Identities = 63/95 (66%), Positives = 77/95 (81%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYIVS+DIA+ V + K G LKMFKLEDVAMGIWI E+ K GL+ YENDGRI+ +
Sbjct: 1929 AHGPGYIVSRDIAESVGKLFKEGNLKMFKLEDVAMGIWIAELTKHGLEPHYENDGRIISD 2108
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE 230
GC+DGYV+AHYQ P +M CLW ++Q+TKR CC+E
Sbjct: 2109 GCKDGYVVAHYQSPAEMTCLWRKYQETKRSLCCRE 2213
Score = 119 bits (255), Expect = 6e-026
Identities = 64/118 (54%), Positives = 69/118 (58%)
Frame = +3 / -3
Query: 222 FCYSLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLI 401
F +S Q R V QR +IS G W**A T*PS HPS ILPSFS S P F S I
Sbjct: 2221 FYHSRQQRERLVSWYLRQRQVISAGLW**ATT*PSLHPSLMILPSFS**GSSPCFVSSAI 2042
Query: 402 HIPIATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLLYG 575
HIPIATSSSLNIF P L L T AMS +T+ PGPCA +MYHLL G
Sbjct: 2041 HIPIATSSSLNIFRFPSLKSLPTDSAMSRDTM*PGPCAHGGYFSSGHSS*LMYHLLSG 1868
>ref|NM_102445.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G26810 mRNA,
complete cds
Length = 2438
Score = 169 bits (363), Expect = 8e-041
Identities = 63/95 (66%), Positives = 77/95 (81%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYIVS+DIA+ V + K G LKMFKLEDVAMGIWI E+ K GL+ YENDGRI+ +
Sbjct: 1929 AHGPGYIVSRDIAESVGKLFKEGNLKMFKLEDVAMGIWIAELTKHGLEPHYENDGRIISD 2108
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE 230
GC+DGYV+AHYQ P +M CLW ++Q+TKR CC+E
Sbjct: 2109 GCKDGYVVAHYQSPAEMTCLWRKYQETKRSLCCRE 2213
Score = 119 bits (255), Expect = 6e-026
Identities = 64/118 (54%), Positives = 69/118 (58%)
Frame = +3 / -2
Query: 222 FCYSLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLI 401
F +S Q R V QR +IS G W**A T*PS HPS ILPSFS S P F S I
Sbjct: 2221 FYHSRQQRERLVSWYLRQRQVISAGLW**ATT*PSLHPSLMILPSFS**GSSPCFVSSAI 2042
Query: 402 HIPIATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLLYG 575
HIPIATSSSLNIF P L L T AMS +T+ PGPCA +MYHLL G
Sbjct: 2041 HIPIATSSSLNIFRFPSLKSLPTDSAMSRDTM*PGPCAHGGYFSSGHSS*LMYHLLSG 1868
>gb|CW835798.1|CW835798 ET6298.Ds5.06.13.00.b.526 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET6298, DNA sequence
Length = 526
Score = 129 bits (276), Expect(3) = 1e-038
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = -1 / -2
Query: 436 MFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQK 257
MFKLEDVAMGIWI E+ K GL+ YENDGRI+ +GC+DGYV+AHYQ P +M CLW ++Q+
Sbjct: 267 MFKLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQE 88
Query: 256 TKRGTCCKE 230
TKR CC+E
Sbjct: 87 TKRSLCCRE 61
Score = 84.5 bits (178), Expect(3) = 8e-022
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +3 / +2
Query: 222 FCYSLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLI 401
F +S Q R V QR +IS G W**A T*PS HPS ILPSFS S P F S I
Sbjct: 53 FYHSRQQRERLVSWYLRQRQVISAGLW**ATT*PSLHPSLMILPSFS**GSSPCFVSSAI 232
Query: 402 HIPIATSSSLNIFN 443
HIPIATSSSLNI++
Sbjct: 233 HIPIATSSSLNIYS 274
Score = 36.8 bits (74), Expect(3) = 1e-038
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKM 434
AHGPGYIVS+ A+ V + K G LK+
Sbjct: 435 AHGPGYIVSRXQAESVGKLFKEGNLKV 355
Score = 34.1 bits (68), Expect(3) = 1e-038
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = -3 / -1
Query: 545 GMA*GELSSLGAWTRIYC 492
GMA* E+S++GAW+R++C
Sbjct: 466 GMA*REISTMGAWSRLHC 413
Score = 31.3 bits (62), Expect(3) = 8e-022
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 494 NISWSMRPGRITLLRPFL 547
N++W+MRP I L RPFL
Sbjct: 415 NVAWTMRPWWIFLFRPFL 468
Score = 27.2 bits (53), Expect(3) = 8e-022
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3 / +2
Query: 432 NIFNSPLLCFL*TSLAMSFETIYPGPCA 515
N F P L L T A +T+ PGPCA
Sbjct: 353 NTFRFPSLKSLPTDSACXRDTM*PGPCA 436
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 129 bits (276), Expect(2) = 7e-036
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = -1 / -3
Query: 436 MFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQK 257
MFKLEDVAMGIWI E+ K GL+ YENDGRI+ +GC+DGYV+AHYQ P +M CLW ++Q+
Sbjct: 9295681 MFKLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQE 9295502
Query: 256 TKRGTCCKE 230
TKR CC+E
Sbjct: 9295501 TKRSLCCRE 9295475
Score = 43.2 bits (88), Expect(2) = 7e-036
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKM 434
AHGPGYIVS+DIA+ V + K G LK+
Sbjct: 9295849 AHGPGYIVSRDIAESVGKLFKEGNLKV 9295769
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
complete sequence
Length = 98630
Score = 129 bits (276), Expect(2) = 7e-036
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = -1 / -3
Query: 436 MFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQK 257
MFKLEDVAMGIWI E+ K GL+ YENDGRI+ +GC+DGYV+AHYQ P +M CLW ++Q+
Sbjct: 86832 MFKLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQE 86653
Query: 256 TKRGTCCKE 230
TKR CC+E
Sbjct: 86652 TKRSLCCRE 86626
Score = 43.2 bits (88), Expect(2) = 7e-036
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKM 434
AHGPGYIVS+DIA+ V + K G LK+
Sbjct: 87000 AHGPGYIVSRDIAESVGKLFKEGNLKV 86920
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 129 bits (276), Expect = 8e-029
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = -1 / -3
Query: 436 MFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQK 257
MFKLEDVAMGIWI E+ K GL+ YENDGRI+ +GC+DGYV+AHYQ P +M CLW ++Q+
Sbjct: 9287061 MFKLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQE 9286882
Query: 256 TKRGTCCKE 230
TKR CC+E
Sbjct: 9286881 TKRSLCCRE 9286855
>gb|AV797563.1|AV797563 AV797563 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-12-K06 3',
mRNA sequence
Length = 432
Score = 127 bits (273), Expect = 2e-028
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 391 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 212
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 211 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 74
>gb|AV555811.1|AV555811 AV555811 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ026f06F 3', mRNA sequence
Length = 624
Score = 127 bits (273), Expect = 2e-028
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 368 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 189
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 188 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 51
>gb|BP620947.1|BP620947 BP620947 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-39-G07 3',
mRNA sequence
Length = 433
Score = 127 bits (273), Expect = 2e-028
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 404 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 225
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 224 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 87
>gb|AF361640.1| Arabidopsis thaliana AT3g06440/F24P17_7 mRNA, complete cds
Length = 2099
Score = 127 bits (273), Expect = 2e-028
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 1707 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 1886
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 1887 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 2024
>ref|NM_111519.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT3G06440 mRNA,
complete cds
Length = 2282
Score = 127 bits (273), Expect = 2e-028
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 1707 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 1886
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 1887 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 2024
>gb|BP789189.1|BP789189 BP789189 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-37-F02 3',
mRNA sequence
Length = 414
Score = 127 bits (272), Expect = 3e-028
Identities = 48/102 (47%), Positives = 67/102 (65%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 308 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 129
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEW 209
C+ Y++ HYQ PR ++CLW++ QK + CC+ ++C +
Sbjct: 128 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTY 3
>gb|BT002218.1| Arabidopsis thaliana At3g06440/F24P17_7 mRNA, complete cds
Length = 1860
Score = 125 bits (267), Expect = 1e-027
Identities = 47/94 (50%), Positives = 63/94 (67%)
Frame = -1 / +1
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 1576 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 1755
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCK 233
C+ Y++ HYQ PR ++CLW++ QK + CC+
Sbjct: 1756 DCKSNYILVHYQTPRLILCLWEKLQKENQSICCE 1857
>gb|AY305277.1| Arabidopsis thaliana putative beta 1, 3 galactosyltransferase mRNA,
complete cds; alternatively spliced
Length = 1864
Score = 124 bits (265), Expect = 3e-027
Identities = 47/94 (50%), Positives = 63/94 (67%)
Frame = -1 / +2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R
Sbjct: 1580 AHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNS 1759
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCK 233
C+ Y++ HYQ PR ++CLW++ QK + CC+
Sbjct: 1760 DCKSKYILVHYQTPRLILCLWEKLQKENQSICCE 1861
>gb|BP777811.1|BP777811 BP777811 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-24-A16 3',
mRNA sequence
Length = 392
Score = 122 bits (261), Expect = 9e-027
Identities = 47/104 (45%), Positives = 66/104 (63%)
Frame = -1 / -2
Query: 508 GPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGC 329
GPGYI+S DIAK V + H+ +L +FKLEDVAMGIWI + + VKY ND R C
Sbjct: 391 GPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDC 212
Query: 328 EDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*QKSCEWCFML 197
+ Y++ HYQ PR ++CLW++ QK + CC+ ++C + L
Sbjct: 211 KSNYILVHYQTPRLILCLWEKLQKENQSICCE*ISRACTYVTFL 80
>gb|BH170042.1|BH170042 SALK_002287 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_002287, DNA sequence
Length = 433
Score = 118 bits (252), Expect = 2e-025
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = -1 / -3
Query: 436 MFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQK 257
MFKLEDVAMGIWI E+ GL+ +ENDGRI+ +GC+DGYV+AHYQ P +M W ++Q+
Sbjct: 272 MFKLEDVAMGIWIAELTNHGLEPHFENDGRIISDGCKDGYVVAHYQSPAEMTFFWRKYQE 93
Query: 256 TKRGTCCKE 230
TKR CC+E
Sbjct: 92 TKRSICCRE 66
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence,
complete sequence
Length = 86022
Score = 94.1 bits (199), Expect(2) = 2e-024
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = -1 / +1
Query: 439 KMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQ 260
K+FKLEDVAMGIWI + + VKY ND R C+ Y++ HYQ PR ++CLW++ Q
Sbjct: 19174 KLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILCLWEKLQ 19353
Query: 259 KTKRGTCCKE*QKSCEWCFML 197
K + CC+ ++C + L
Sbjct: 19354 KENQSICCE*ISRACTYVTFL 19416
Score = 40.0 bits (81), Expect(2) = 2e-024
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -1 / +1
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGEL 440
AHGPGYI+S DIAK V + H+ +L
Sbjct: 19009 AHGPGYIISHDIAKFVVKGHRQRDL 19083
>gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ34e04F 3', mRNA sequence
Length = 635
Score = 107 bits (229), Expect(2) = 2e-024
Identities = 38/93 (40%), Positives = 58/93 (62%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGY++S DIA+ + K + +L++FK+EDV++G+W+ K V Y + R
Sbjct: 511 ANGPGYVLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHFKNTSNPVDYRHSLRFCQF 332
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y AHYQ PR M+CLWD+ + + CC
Sbjct: 331 GCVENYYTAHYQSPRQMICLWDKLLRQNKPECC 233
Score = 26.3 bits (51), Expect(2) = 2e-024
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 548 *GMA*GELSSLGAWTRI 498
*GMA G LS+L WTRI
Sbjct: 545 *GMARGGLSALRKWTRI 495
>gb|CW839552.1|CW839552 GT8529.Ds5.04.27.01.JU92.b.413 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT8529, DNA sequence
Length = 413
Score = 93.6 bits (198), Expect(2) = 3e-024
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = -1 / -3
Query: 439 KMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQ 260
K+FKLEDVAMGIWI + + VKY ND R C+ Y++ HYQ PR ++CLW++ Q
Sbjct: 240 KLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILCLWEKLQ 61
Query: 259 KTKRGTCCKE*QKSCEW 209
K + CC+ ++C +
Sbjct: 60 KENQSICCE*ISRACTY 10
Score = 40.0 bits (81), Expect(2) = 3e-024
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGEL 440
AHGPGYI+S DIAK V + H+ +L
Sbjct: 405 AHGPGYIISHDIAKFVVKGHRQRDL 331
>gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA, complete cds
Length = 2391
Score = 106 bits (227), Expect(2) = 4e-024
Identities = 38/93 (40%), Positives = 58/93 (62%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGY++S DIA+ + K + +L++FK+EDV++G+W+ K V Y + R
Sbjct: 1848 ANGPGYVLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHFKNTTNPVDYRHSLRFCQF 2027
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y AHYQ PR M+CLWD+ + + CC
Sbjct: 2028 GCVENYYTAHYQSPRQMICLWDKLLRQNKPECC 2126
Score = 26.3 bits (51), Expect(2) = 4e-024
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / +2
Query: 548 *GMA*GELSSLGAWTRI 498
*GMA G LS+L WTRI
Sbjct: 1814 *GMARGGLSALRKWTRI 1864
>ref|NM_106138.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G74800 mRNA,
complete cds
Length = 2391
Score = 106 bits (227), Expect(2) = 4e-024
Identities = 38/93 (40%), Positives = 58/93 (62%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGY++S DIA+ + K + +L++FK+EDV++G+W+ K V Y + R
Sbjct: 1848 ANGPGYVLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHFKNTTNPVDYRHSLRFCQF 2027
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y AHYQ PR M+CLWD+ + + CC
Sbjct: 2028 GCVENYYTAHYQSPRQMICLWDKLLRQNKPECC 2126
Score = 26.3 bits (51), Expect(2) = 4e-024
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / +2
Query: 548 *GMA*GELSSLGAWTRI 498
*GMA G LS+L WTRI
Sbjct: 1814 *GMARGGLSALRKWTRI 1864
>emb|BX824434.1|CNS0A7G0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH48ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2046
Score = 91.3 bits (193), Expect(2) = 4e-024
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = -1 / +1
Query: 442 LKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQF 263
L++FKLEDVAMGIWI + + VKY ND R C+ Y++ HYQ PR ++CLW++
Sbjct: 1750 LELFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILCLWEKL 1929
Query: 262 QKTKRGTCCKE*QKSCEWCFML 197
QK CC ++C + L
Sbjct: 1930 QKENPSICCG*ISRACTYVTFL 1995
Score = 41.8 bits (85), Expect(2) = 4e-024
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1 / +3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFK 428
AHGPGYI+S DIAK V + H+ +L F+
Sbjct: 1677 AHGPGYIISHDIAKFVVKGHRQRDLGTFQ 1763
>gb|AY305276.1| Arabidopsis thaliana putative beta 1, 3 galactosyltransferase-like
protein mRNA, complete cds; alternatively spliced
Length = 1954
Score = 89.0 bits (188), Expect(2) = 7e-023
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = -1 / +2
Query: 439 KMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQ 260
K+FKLEDVAMGIWI + + VKY ND R C+ Y + HYQ PR ++CLW++ Q
Sbjct: 1745 KLFKLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSKYTLVHYQTPRLILCLWEKLQ 1924
Query: 259 KTKRGTCCK 233
K + CC+
Sbjct: 1925 KENQSICCE 1951
Score = 40.0 bits (81), Expect(2) = 7e-023
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -1 / +2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGEL 440
AHGPGYI+S DIAK V + H+ +L
Sbjct: 1580 AHGPGYIISHDIAKFVVKGHRQRDL 1654
>gb|AV800587.1|AV800587 AV800587 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-24-L19 3',
mRNA sequence
Length = 407
Score = 109 bits (232), Expect = 9e-023
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -1 / -3
Query: 409 GIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE 230
GIWI E+ K GL+ YENDGRI+ +GC+DGYV+AHYQ P +M CLW ++Q+TKR CC+E
Sbjct: 405 GIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQETKRSLCCRE 226
>gb|AV813783.1|AV813783 AV813783 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-80-A13 3',
mRNA sequence
Length = 384
Score = 92.7 bits (196), Expect(3) = 1e-022
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = -1 / -3
Query: 457 HKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMC 278
H+ +L +FKLED+AMGIWI + + VKY ND R C+ Y++ HYQ PR ++C
Sbjct: 223 HRQRDLGLFKLEDLAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILC 44
Query: 277 LWDQFQKTKRGTCC 236
LW++ QK + CC
Sbjct: 43 LWEKLQKENQSICC 2
Score = 34.5 bits (69), Expect(3) = 1e-022
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYR 461
AHGPGYI+S DIAK V +
Sbjct: 284 AHGPGYIISHDIAKFVVK 231
Score = 17.6 bits (32), Expect(3) = 1e-022
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3 / -1
Query: 566 QVVHNP*GMA*GELSSLGAW 507
Q+V+ GMA + S+G W
Sbjct: 336 QMVYP*RGMAFRFIPSMGTW 277
>gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701554812, mRNA sequence
Length = 566
Score = 105 bits (225), Expect = 8e-022
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGYI+S DI++ + ++ + +L+MFK+EDV++G+W+ + V Y + R
Sbjct: 448 ANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVDYIHSLRFCQF 269
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y+ AHYQ PR M+CLWD+ T + CC
Sbjct: 268 GCIENYLTAHYQSPRQMICLWDKLVLTGKPQCC 170
>emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZA04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2581
Score = 105 bits (225), Expect = 8e-022
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = -1 / +2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGYI+S DI++ + ++ + +L+MFK+EDV++G+W+ + V Y + R
Sbjct: 2141 ANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVDYIHSLRFCQF 2320
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y+ AHYQ PR M+CLWD+ T + CC
Sbjct: 2321 GCIENYLTAHYQSPRQMICLWDKLVLTGKPQCC 2419
>emb|CQ804810.1| Sequence 1221 from Patent WO2004035798
Length = 2046
Score = 105 bits (225), Expect = 8e-022
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = -1 / +1
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGYI+S DI++ + ++ + +L+MFK+EDV++G+W+ + V Y + R
Sbjct: 1756 ANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVDYIHSLRFCQF 1935
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y+ AHYQ PR M+CLWD+ T + CC
Sbjct: 1936 GCIENYLTAHYQSPRQMICLWDKLVLTGKPQCC 2034
>ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase/ transferase, transferring
hexosyl groups AT5G62620 mRNA, complete cds
Length = 2589
Score = 105 bits (225), Expect = 8e-022
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = -1 / +2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
A+GPGYI+S DI++ + ++ + +L+MFK+EDV++G+W+ + V Y + R
Sbjct: 2141 ANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVDYIHSLRFCQF 2320
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
GC + Y+ AHYQ PR M+CLWD+ T + CC
Sbjct: 2321 GCIENYLTAHYQSPRQMICLWDKLVLTGKPQCC 2419
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 79.4 bits (167), Expect(3) = 7e-021
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1 / -3
Query: 439 KMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQ 260
++FK+EDV++G+W+ K V Y + R GC + Y AHYQ PR M+CLWD+
Sbjct: 12343755 QLFKMEDVSVGMWVEHFKNTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKLL 12343576
Query: 259 KTKRGTCC 236
+ + CC
Sbjct: 12343575 RQNKPECC 12343552
Score = 34.1 bits (68), Expect(3) = 7e-021
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLE 422
A+GPGY++S DIA+ + K + +L++ K E
Sbjct: 12343906 ANGPGYVLSSDIARFIVDKFERHKLRVSKRE 12343814
Score = 25.8 bits (50), Expect(3) = 7e-021
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / -1
Query: 545 GMA*GELSSLGAWTRI 498
GMA G LS+L WTRI
Sbjct: 12343937 GMARGGLSALRKWTRI 12343890
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
Length = 115721
Score = 79.4 bits (167), Expect(3) = 8e-021
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1 / +3
Query: 439 KMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQ 260
++FK+EDV++G+W+ K V Y + R GC + Y AHYQ PR M+CLWD+
Sbjct: 72594 QLFKMEDVSVGMWVEHFKNTTNPVDYRHSLRFCQFGCVENYYTAHYQSPRQMICLWDKLL 72773
Query: 259 KTKRGTCC 236
+ + CC
Sbjct: 72774 RQNKPECC 72797
Score = 34.1 bits (68), Expect(3) = 8e-021
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -1 / +2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLE 422
A+GPGY++S DIA+ + K + +L++ K E
Sbjct: 72443 ANGPGYVLSSDIARFIVDKFERHKLRVSKRE 72535
Score = 25.8 bits (50), Expect(3) = 8e-021
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +1
Query: 545 GMA*GELSSLGAWTRI 498
GMA G LS+L WTRI
Sbjct: 72412 GMARGGLSALRKWTRI 72459
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,242,545,704
Number of Sequences: 1013581
Number of extensions: 16860315
Number of successful extensions: 215258
Number of sequences better than 1.0e-020: 38
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 33623733560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)