TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_100879.2| Arabidopsis thaliana hydrolase, hydrolyzin... 141 1e-040
dbj|AB008015.1| Arabidopsis thaliana RXF12 mRNA, complete cds 141 8e-039
ref|NM_104617.2| Arabidopsis thaliana RXF12; hydrolase, hyd... 141 8e-039
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 77 6e-035
gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsi... 77 7e-035
dbj|AB077822.1| Arabidopsis thaliana genomic DNA, chromosom... 77 7e-035
gb|AC082643.6|AC082643 Arabidopsis thaliana chromosome 1 BA... 77 7e-035
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 76 1e-032
gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 ... 76 1e-032
emb|BX841877.1|CNS09Y41 Arabidopsis thaliana Full-length cD... 103 1e-027
>ref|NM_100879.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G10050 mRNA, complete cds
Length = 3230
Score = 141 bits (303), Expect(3) = 1e-040
Identities = 59/119 (49%), Positives = 79/119 (66%)
Frame = +2 / +1
Query: 245 ENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGS 424
E+ AVV+ R+E WQGLEQDIT+ VS G Y VSA V V G V G +V ATL+L++ +
Sbjct: 643 ESNAVVNNRSETWQGLEQDITDNVSPGFSYKVSASVSVSGPVLGSAQVLATLKLEHKSSA 822
Query: 425 THYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQ 601
T + +G ASK+ W LEG+F ++ P VVF+LEGPP G+DL++ SVT+ C Q
Sbjct: 823 TEFQLIGKTYASKDIWKTLEGTFEVSGRPDRVVFFLEGPPPGIDLLVKSVTIHCESDNQ 999
Score = 137 bits (293), Expect(2) = 1e-035
Identities = 61/127 (48%), Positives = 79/127 (62%)
Frame = +2 / +1
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
+S Y VV+ R E WQGLEQDIT +V++G Y VS V V G EV +T+RL++
Sbjct: 127 SSSGGYVVVTNRKETWQGLEQDITTRVASGMNYTVSTCVGVSGPFNESAEVLSTVRLEHE 306
Query: 416 DGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRH 595
D T Y +G AS++KW LEG+FS++NMP VV YLEGP G DL+I SVTV S
Sbjct: 307 DSPTEYLCIGKTYASRDKWVDLEGTFSISNMPDRVVLYLEGPAPGKDLLIRSVTVRSSTS 486
Query: 596 KQSKEVK 616
+E +
Sbjct: 487 SDFQETE 507
Score = 36.3 bits (73), Expect(3) = 1e-040
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NII N+DFS GL+ WN C ++ S
Sbjct: 547 NIIKNHDFSDGLYSWNTNGCDSFVVS 624
Score = 36.3 bits (73), Expect(2) = 1e-035
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NI++N DF G+ PW P C A+ S
Sbjct: 13 NIVMNGDFFAGIEPWYPNGCEAFVVS 90
Score = 31.3 bits (62), Expect(3) = 1e-040
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 20 RLXXXXEGPPPGVDLLIDSVTI 85
R+ EGP PG DLLI SVT+
Sbjct: 406 RVVLYLEGPAPGKDLLIRSVTV 471
>dbj|AB008015.1| Arabidopsis thaliana RXF12 mRNA, complete cds
Length = 2903
Score = 141 bits (302), Expect(2) = 8e-039
Identities = 60/111 (54%), Positives = 76/111 (68%)
Frame = +2 / +2
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 248 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 427
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+Y + KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 428 NYQFIAKTCVFKEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 580
Score = 101 bits (216), Expect(2) = 2e-023
Identities = 43/114 (37%), Positives = 70/114 (61%)
Frame = +2 / +2
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
SG+ +A ++RT++W G++Q+IT +V VY +A VR+ G V+ATL +QN +
Sbjct: 737 SGKVFASATERTQNWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTTATVQATLWVQNPN 916
Query: 419 GSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
Y + +V A+ ++W L+G F L VV Y+EGPP G D++++S+TV
Sbjct: 917 QRDQYIGISTVQATDKEWIHLKGKFLLNGSASRVVIYIEGPPPGTDILLNSLTV 1078
Score = 43.2 bits (88), Expect(2) = 8e-039
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / +2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 122 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 226
Score = 34.1 bits (68), Expect(2) = 2e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 38 EGPPPGVDLLIDSVTI 85
EGP PG+DLLI SVTI
Sbjct: 533 EGPSPGIDLLIQSVTI 580
>ref|NM_104617.2| Arabidopsis thaliana RXF12; hydrolase, hydrolyzing O-glycosyl
compounds AT1G58370 (RXF12) mRNA, complete cds
Length = 2883
Score = 141 bits (302), Expect(2) = 8e-039
Identities = 60/111 (54%), Positives = 76/111 (68%)
Frame = +2 / +3
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 228 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 407
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+Y + KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 408 NYQFIAKTCVFKEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 560
Score = 101 bits (216), Expect(2) = 2e-023
Identities = 43/114 (37%), Positives = 70/114 (61%)
Frame = +2 / +3
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
SG+ +A ++RT++W G++Q+IT +V VY +A VR+ G V+ATL +QN +
Sbjct: 717 SGKVFASATERTQNWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTTATVQATLWVQNPN 896
Query: 419 GSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
Y + +V A+ ++W L+G F L VV Y+EGPP G D++++S+TV
Sbjct: 897 QRDQYIGISTVQATDKEWIHLKGKFLLNGSASRVVIYIEGPPPGTDILLNSLTV 1058
Score = 43.2 bits (88), Expect(2) = 8e-039
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / +3
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 102 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 206
Score = 34.1 bits (68), Expect(2) = 2e-023
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / +3
Query: 38 EGPPPGVDLLIDSVTI 85
EGP PG+DLLI SVTI
Sbjct: 513 EGPSPGIDLLIQSVTI 560
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 77.1 bits (162), Expect(3) = 6e-035
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +2 / +1
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 6044533 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 6044712
Query: 428 HY 433
+Y
Sbjct: 6044713 NY 6044718
Score = 68.9 bits (144), Expect(3) = 6e-035
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / +1
Query: 461 KEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 6044815 KEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 6044934
Score = 43.2 bits (88), Expect(3) = 6e-035
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 6044407 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 6044511
>gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1,
complete sequence
Length = 86014
Score = 77.1 bits (162), Expect(3) = 7e-035
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +2 / -2
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 4782 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 4603
Query: 428 HY 433
+Y
Sbjct: 4602 NY 4597
Score = 68.9 bits (144), Expect(3) = 7e-035
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / -2
Query: 461 KEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 4500 KEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 4381
Score = 43.2 bits (88), Expect(3) = 7e-035
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / -2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 4908 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 4804
>dbj|AB077822.1| Arabidopsis thaliana genomic DNA, chromosome 1, P1 clone:X7J, complete
sequence
Length = 77636
Score = 77.1 bits (162), Expect(3) = 7e-035
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +2 / +1
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 13648 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 13827
Query: 428 HY 433
+Y
Sbjct: 13828 NY 13833
Score = 68.9 bits (144), Expect(3) = 7e-035
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / +1
Query: 461 KEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 13930 KEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 14049
Score = 43.2 bits (88), Expect(3) = 7e-035
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 13522 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 13626
>gb|AC082643.6|AC082643 Arabidopsis thaliana chromosome 1 BAC F9K23 genomic sequence, complete
sequence
Length = 48891
Score = 77.1 bits (162), Expect(3) = 7e-035
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +2 / -1
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T
Sbjct: 47676 SYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQT 47497
Query: 428 HY 433
+Y
Sbjct: 47496 NY 47491
Score = 68.9 bits (144), Expect(3) = 7e-035
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / -1
Query: 461 KEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+
Sbjct: 47394 KEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI 47275
Score = 43.2 bits (88), Expect(3) = 7e-035
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / -1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 47802 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 47698
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 76.2 bits (160), Expect(3) = 1e-032
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = +2 / +1
Query: 245 ENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGS 424
E+ AVV+ R+E WQGLEQDIT+ VS G Y VSA V V G V G +V ATL+L++ +
Sbjct: 3280252 ESNAVVNNRSETWQGLEQDITDNVSPGFSYKVSASVSVSGPVLGSAQVLATLKLEHKSSA 3280431
Query: 425 THYNPVG 445
T + +G
Sbjct: 3280432 TEFQLIG 3280452
Score = 73.0 bits (153), Expect(3) = 3e-031
Identities = 33/73 (45%), Positives = 43/73 (58%)
Frame = +2 / +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
+S Y VV+ R E WQGLEQDIT +V++G Y VS V V G EV +T+RL++
Sbjct: 3279218 SSSGGYVVVTNRKETWQGLEQDITTRVASGMNYTVSTCVGVSGPFNESAEVLSTVRLEHE 3279397
Query: 416 DGSTHYNPVGSVV 454
D T Y +G V
Sbjct: 3279398 DSPTEYLCIGKYV 3279436
Score = 68.9 bits (144), Expect(3) = 1e-032
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2 / +2
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQ 601
ASK+ W LEG+F ++ P VVF+LEGPP G+DL++ SVT+ C Q
Sbjct: 3280544 ASKDIWKTLEGTFEVSGRPDRVVFFLEGPPPGIDLLVKSVTIHCESDNQ 3280690
Score = 67.5 bits (141), Expect(3) = 3e-031
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +2 / +3
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACS 589
AS++KW LEG+FS++NMP VV YLEGP G DL+I SVTV S
Sbjct: 3279519 ASRDKWVDLEGTFSISNMPDRVVLYLEGPAPGKDLLIRSVTVRSS 3279653
Score = 36.3 bits (73), Expect(3) = 1e-032
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NII N+DFS GL+ WN C ++ S
Sbjct: 3280156 NIIKNHDFSDGLYSWNTNGCDSFVVS 3280233
Score = 36.3 bits (73), Expect(3) = 3e-031
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NI++N DF G+ PW P C A+ S
Sbjct: 3279104 NIVMNGDFFAGIEPWYPNGCEAFVVS 3279181
>gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete
sequence
Length = 67878
Score = 76.2 bits (160), Expect(3) = 1e-032
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = +2 / +1
Query: 245 ENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGS 424
E+ AVV+ R+E WQGLEQDIT+ VS G Y VSA V V G V G +V ATL+L++ +
Sbjct: 25744 ESNAVVNNRSETWQGLEQDITDNVSPGFSYKVSASVSVSGPVLGSAQVLATLKLEHKSSA 25923
Query: 425 THYNPVG 445
T + +G
Sbjct: 25924 TEFQLIG 25944
Score = 73.0 bits (153), Expect(3) = 3e-031
Identities = 33/73 (45%), Positives = 43/73 (58%)
Frame = +2 / +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
+S Y VV+ R E WQGLEQDIT +V++G Y VS V V G EV +T+RL++
Sbjct: 24710 SSSGGYVVVTNRKETWQGLEQDITTRVASGMNYTVSTCVGVSGPFNESAEVLSTVRLEHE 24889
Query: 416 DGSTHYNPVGSVV 454
D T Y +G V
Sbjct: 24890 DSPTEYLCIGKYV 24928
Score = 68.9 bits (144), Expect(3) = 1e-032
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2 / +2
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQ 601
ASK+ W LEG+F ++ P VVF+LEGPP G+DL++ SVT+ C Q
Sbjct: 26036 ASKDIWKTLEGTFEVSGRPDRVVFFLEGPPPGIDLLVKSVTIHCESDNQ 26182
Score = 67.5 bits (141), Expect(3) = 3e-031
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +2 / +3
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACS 589
AS++KW LEG+FS++NMP VV YLEGP G DL+I SVTV S
Sbjct: 25011 ASRDKWVDLEGTFSISNMPDRVVLYLEGPAPGKDLLIRSVTVRSS 25145
Score = 36.3 bits (73), Expect(3) = 1e-032
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NII N+DFS GL+ WN C ++ S
Sbjct: 25648 NIIKNHDFSDGLYSWNTNGCDSFVVS 25725
Score = 36.3 bits (73), Expect(3) = 3e-031
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAAS 202
NI++N DF G+ PW P C A+ S
Sbjct: 24596 NIVMNGDFFAGIEPWYPNGCEAFVVS 24673
>emb|BX841877.1|CNS09Y41 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZD04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 570
Score = 103 bits (220), Expect(2) = 1e-027
Identities = 49/111 (44%), Positives = 64/111 (57%)
Frame = +2 / +3
Query: 248 NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
+Y VV R + WQGLEQDITN+V ++Y SA V G V G VEV ATL+L T
Sbjct: 228 SYVVVKNRKDTWQGLEQDITNRVKPCSLY*FSATFAVSGPVHGLVEVMATLKLDIQLSQT 407
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+Y + KEKW +LEG FSL ++P+ VFY P + L+I V +
Sbjct: 408 NYQFIAKSCVFKEKWVRLEGMFSLPSLPEKFVFYF*FPSPWIYLIIKYVKI 560
Score = 43.2 bits (88), Expect(2) = 1e-027
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2 / +3
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
N+I+N+DFS G+H W+P C A+ + S G+
Sbjct: 102 NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGV 206
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,344,522,041
Number of Sequences: 1013581
Number of extensions: 19408705
Number of successful extensions: 168907
Number of sequences better than 1.0e-020: 12
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 38568400260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)