TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063O07F020916.3.1
(657 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB006697.1| Arabidopsis thaliana genomic DNA, chromosom... 122 8e-032
ref|NM_120942.2| Arabidopsis thaliana nucleotide binding AT... 122 8e-032
gb|AY054535.1| Arabidopsis thaliana WD-repeat protein-like ... 122 8e-032
emb|BX830136.1|CNS09YW7 Arabidopsis thaliana Full-length cD... 122 8e-032
emb|BX829722.1|CNS0A18L Arabidopsis thaliana Full-length cD... 122 8e-032
gb|AV827728.1|AV827728 AV827728 RAFL9 Arabidopsis thaliana ... 122 8e-032
gb|AY064639.1| Arabidopsis thaliana WD-repeat protein-like ... 122 2e-028
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 122 8e-027
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 122 8e-027
>dbj|AB006697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAH20
Length = 80970
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / -3
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 41242 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 41063
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 41062 HNSTIKLFLQQV 41027
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / +3
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 41025 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 41204
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 41205 GRGLAIRSPKEL 41240
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / -3
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 41374 YMG*TRNFMGVVEDTEPPLKRAK 41306
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / +3
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 41292 SSASLLARFKGGSVSSTTPMKFLVQPI 41372
>ref|NM_120942.2| Arabidopsis thaliana nucleotide binding AT5G08560 mRNA, complete
cds
Length = 2299
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +3
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 408 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 587
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 588 HNSTIKLFLQQV 623
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -1
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 625 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 446
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 445 GRGLAIRSPKEL 410
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +3
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 276 YMG*TRNFMGVVEDTEPPLKRAK 344
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 358 SSASLLARFKGGSVSSTTPMKFLVQPI 278
>gb|AY054535.1| Arabidopsis thaliana WD-repeat protein-like (At5g08560; MAH20.12)
mRNA, complete cds
Length = 2232
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +2
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 341 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 520
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 521 HNSTIKLFLQQV 556
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -1
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 558 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 379
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 378 GRGLAIRSPKEL 343
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +2
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 209 YMG*TRNFMGVVEDTEPPLKRAK 277
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 291 SSASLLARFKGGSVSSTTPMKFLVQPI 211
>emb|BX830136.1|CNS09YW7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB61ZF08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2204
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +3
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 390 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 569
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 570 HNSTIKLFLQQV 605
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -2
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 607 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 428
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 427 GRGLAIRSPKEL 392
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +3
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 258 YMG*TRNFMGVVEDTEPPLKRAK 326
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / -2
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 340 SSASLLARFKGGSVSSTTPMKFLVQPI 260
>emb|BX829722.1|CNS0A18L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB31ZD09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2091
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +2
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 275 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 454
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 455 HNSTIKLFLQQV 490
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -1
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 492 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 313
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 312 GRGLAIRSPKEL 277
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +2
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 143 YMG*TRNFMGVVEDTEPPLKRAK 211
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / -1
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 225 SSASLLARFKGGSVSSTTPMKFLVQPI 145
>gb|AV827728.1|AV827728 AV827728 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-18-M05 5',
mRNA sequence
Length = 594
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +1
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 331 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 510
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 511 HNSTIKLFLQQV 546
Score = 106 bits (227), Expect(2) = 9e-027
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -2
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 548 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 369
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 368 GRGLAIRSPKEL 333
Score = 36.3 bits (73), Expect(2) = 8e-032
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +1
Query: 293 YMG*SWHFMGGSEDDEPPSKRAR 361
YMG*+ +FMG ED EPP KRA+
Sbjct: 199 YMG*TRNFMGVVEDTEPPLKRAK 267
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1 / -2
Query: 375 STEDVLARFEGGSSSSEPPMKCQDQPI 295
S+ +LARF+GGS SS PMK QPI
Sbjct: 281 SSASLLARFKGGSVSSTTPMKFLVQPI 201
>gb|AY064639.1| Arabidopsis thaliana WD-repeat protein-like (At5g08560; MAH20.12)
mRNA, complete cds
Length = 1803
Score = 122 bits (262), Expect(2) = 2e-028
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / +1
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 109 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 288
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 289 HNSTIKLFLQQV 324
Score = 106 bits (227), Expect(2) = 3e-024
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / -2
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 326 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 147
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 146 GRGLAIRSPKEL 111
Score = 26.7 bits (52), Expect(2) = 3e-024
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1 / -2
Query: 375 STEDVLARFEGGSSSSEPP 319
S+ +LARF+GGS SS P
Sbjct: 59 SSASLLARFKGGSVSSTTP 3
Score = 25.4 bits (49), Expect(2) = 2e-028
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2 / +1
Query: 317 MGGSEDDEPPSKRAR 361
MG ED EPP KRA+
Sbjct: 1 MGVVEDTEPPLKRAK 45
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 122 bits (262), Expect = 8e-027
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / -2
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 2592756 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 2592577
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 2592576 HNSTIKLFLQQV 2592541
Score = 106 bits (227), Expect = 5e-022
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / +2
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 2592539 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 2592718
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 2592719 GRGLAIRSPKEL 2592754
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 122 bits (262), Expect = 8e-027
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2 / -3
Query: 416 SNPLGSTMARPLPSQGKEVMVGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIIL 595
SN LG MARPLPSQG + +GSKGVI+K EFVRIIT+ LYSLGY+K+GA+LEEESGI L
Sbjct: 2773720 SNSLGDLMARPLPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISL 2773541
Query: 596 HNPMVKLFREQV 631
HN +KLF +QV
Sbjct: 2773540 HNSTIKLFLQQV 2773505
Score = 106 bits (227), Expect = 5e-022
Identities = 45/72 (62%), Positives = 53/72 (73%)
Frame = -1 / +3
Query: 633 ITCSLKSFTIGLCKIIPDSSSRTAPLFSYPRLYRVLVIILTNSSFLITPLEPTITSFPWE 454
+TC S + LC+ IPDSSS AP+ SYPR R LVIILTNS FL+TPLEP ++S PWE
Sbjct: 2773503 LTCCRNSLMVELCREIPDSSSNIAPVLSYPRE*RALVIILTNSDFLMTPLEPIVSSSPWE 2773682
Query: 453 GKGLAIVLPKGL 418
G+GLAI PK L
Sbjct: 2773683 GRGLAIRSPKEL 2773718
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,416,144,393
Number of Sequences: 1013581
Number of extensions: 22500110
Number of successful extensions: 457932
Number of sequences better than 1.0e-020: 11
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 40299033605
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)