TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU238898.1|AU238898 AU238898 RAFL19 Arabidopsis thaliana... 119 3e-026
gb|BT005586.1| Arabidopsis thaliana clone U50754 putative L... 119 3e-026
dbj|AK118044.1| Arabidopsis thaliana At2g45800 mRNA for put... 119 3e-026
ref|NM_130143.2| Arabidopsis thaliana zinc ion binding AT2G... 119 3e-026
emb|BX821642.1|CNS0A9BE Arabidopsis thaliana Full-length cD... 113 3e-024
gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence 112 6e-024
ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G... 112 6e-024
gb|BT022103.1| Arabidopsis thaliana At3g61230 mRNA, complet... 111 1e-023
ref|NM_115987.2| Arabidopsis thaliana zinc ion binding AT3G... 111 1e-023
emb|BX817923.1|CNS0AE65 Arabidopsis thaliana Full-length cD... 110 3e-023
emb|BX825681.1|CNS0A6AT Arabidopsis thaliana Full-length cD... 106 3e-022
gb|T42925.1|T42925 6188 Lambda-PRL2 Arabidopsis thaliana cD... 101 8e-021
>gb|AU238898.1|AU238898 AU238898 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-27-K11 5',
mRNA sequence
Length = 642
Score = 119 bits (255), Expect = 3e-026
Identities = 50/104 (48%), Positives = 57/104 (54%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +DLLT YHK+ HCKG + YSSMD LYCK
Sbjct: 112 MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 291
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQD 380
HF QLFK +G++SKNF LTR PSK S QD
Sbjct: 292 HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQD 423
>gb|BT005586.1| Arabidopsis thaliana clone U50754 putative LIM-domain protein
(At2g45800) mRNA, complete cds
Length = 712
Score = 119 bits (255), Expect = 3e-026
Identities = 50/104 (48%), Positives = 57/104 (54%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +DLLT YHK+ HCKG + YSSMD LYCK
Sbjct: 1 MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 180
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQD 380
HF QLFK +G++SKNF LTR PSK S QD
Sbjct: 181 HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQD 312
>dbj|AK118044.1| Arabidopsis thaliana At2g45800 mRNA for putative LIM-domain
protein, complete cds, clone: RAFL19-27-K11
Length = 991
Score = 119 bits (255), Expect = 3e-026
Identities = 50/104 (48%), Positives = 57/104 (54%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +DLLT YHK+ HCKG + YSSMD LYCK
Sbjct: 112 MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 291
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQD 380
HF QLFK +G++SKNF LTR PSK S QD
Sbjct: 292 HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQD 423
>ref|NM_130143.2| Arabidopsis thaliana zinc ion binding AT2G45800 transcript variant
AT2G45800.1 mRNA, complete cds
Length = 1224
Score = 119 bits (255), Expect = 3e-026
Identities = 50/104 (48%), Positives = 57/104 (54%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +DLLT YHK+ HCKG + YSSMD LYCK
Sbjct: 112 MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 291
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQD 380
HF QLFK +G++SKNF LTR PSK S QD
Sbjct: 292 HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQD 423
>emb|BX821642.1|CNS0A9BE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL60ZD04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 944
Score = 113 bits (241), Expect = 3e-024
Identities = 48/104 (46%), Positives = 56/104 (53%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +DLLT YHK+ HCKG + YSSMD LYCK
Sbjct: 55 MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 234
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQD 380
HF QLFK +G++SKN LTR PSK S Q+
Sbjct: 235 HFEQLFKESGNYSKNNQAGKTEKPNDHLTRTPSKLSTFFSGTQN 366
>gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence
Length = 3229
Score = 112 bits (239), Expect = 6e-024
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +3 / +2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +D+L+ YHK+ HCKG M YSSMD LYCKT
Sbjct: 2453 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 2632
Query: 249 HFXQLFKXTGSFSKNFTP 302
HF QLFK +G+FSKNF P
Sbjct: 2633 HFEQLFKESGNFSKNFQP 2686
>ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G01780 mRNA, complete cds
Length = 765
Score = 112 bits (239), Expect = 6e-024
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +D+L+ YHK+ HCKG M YSSMD LYCKT
Sbjct: 148 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 327
Query: 249 HFXQLFKXTGSFSKNFTP 302
HF QLFK +G+FSKNF P
Sbjct: 328 HFEQLFKESGNFSKNFQP 381
>gb|BT022103.1| Arabidopsis thaliana At3g61230 mRNA, complete cds
Length = 710
Score = 111 bits (236), Expect = 1e-023
Identities = 45/107 (42%), Positives = 56/107 (52%)
Frame = +3 / +1
Query: 72 SFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKTH 251
+FTG KC CDK + +DL+T YHK+ HC G + YSSMD LYCKTH
Sbjct: 58 AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 237
Query: 252 FXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQDXXXA 392
F QLFK +G+FSKNF T+ P++ S QD A
Sbjct: 238 FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAA 378
>ref|NM_115987.2| Arabidopsis thaliana zinc ion binding AT3G61230 mRNA, complete cds
Length = 1351
Score = 111 bits (236), Expect = 1e-023
Identities = 45/107 (42%), Positives = 56/107 (52%)
Frame = +3 / +2
Query: 72 SFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKTH 251
+FTG KC CDK + +DL+T YHK+ HC G + YSSMD LYCKTH
Sbjct: 101 AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 280
Query: 252 FXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQDXXXA 392
F QLFK +G+FSKNF T+ P++ S QD A
Sbjct: 281 FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAA 421
>emb|BX817923.1|CNS0AE65 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL50ZE05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 931
Score = 110 bits (234), Expect = 3e-023
Identities = 42/78 (53%), Positives = 49/78 (62%)
Frame = +3 / +2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK + +D+L+ YHK+ HCKG M YSSMD LYC T
Sbjct: 149 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCNT 328
Query: 249 HFXQLFKXTGSFSKNFTP 302
HF QLFK +G+FSKNF P
Sbjct: 329 HFEQLFKESGNFSKNFQP 382
>emb|BX825681.1|CNS0A6AT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL56ZA06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 912
Score = 106 bits (227), Expect = 3e-022
Identities = 44/107 (41%), Positives = 55/107 (51%)
Frame = +3 / +2
Query: 72 SFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKTH 251
+FTG KC C K + +DL+T YHK+ HC G + YSSMD LYCKTH
Sbjct: 101 AFTGTTDKCKACYKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 280
Query: 252 FXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQDXXXA 392
F QLFK +G+FSKNF T+ P++ S QD A
Sbjct: 281 FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAA 421
>gb|T42925.1|T42925 6188 Lambda-PRL2 Arabidopsis thaliana cDNA clone 117H2T7, mRNA
sequence
Length = 275
Score = 101 bits (216), Expect = 8e-021
Identities = 44/78 (56%), Positives = 50/78 (64%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M FTG KC CDK + +D+L+ YHK HCKG M YSSMD LY K
Sbjct: 24 MXFTGTLDKCNVCDKTVYVVDMLSIXGXPYHKFCFRCTHCKGTLQMSNYSSMDGVLYXKX 203
Query: 249 HFXQLFKXTGSFSKNFTP 302
HF QLFK +G+FSKNF P
Sbjct: 204 HFXQLFKXSGNFSKNFQP 257
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 404,076,534
Number of Sequences: 1013581
Number of extensions: 2700562
Number of successful extensions: 64028
Number of sequences better than 1.0e-020: 14
length of database: 302,980,290
effective HSP length: 53
effective length of database: 249,260,497
effective search space used: 19193058269
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)