TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_121456.1| Arabidopsis thaliana transcription coactiv... 468 0.0
emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome ... 136 e-167
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 136 3e-052
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 136 3e-052
gb|B98658.1|B98658 F19B7TFB IGF Arabidopsis thaliana genomi... 84 2e-029
emb|AL771160.1| Arabidopsis thaliana T-DNA flanking sequenc... 124 9e-027
gb|BH633232.1|BH633232 SALK_041045 Arabidopsis thaliana TDN... 109 3e-022
emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome... 109 3e-022
gb|B97803.1|B97803 F18O22TRB IGF Arabidopsis thaliana genom... 105 6e-022
>ref|NM_121456.1| Arabidopsis thaliana transcription coactivator AT5G14520 mRNA,
complete cds
Length = 1773
Score = 468 bits (1016), Expect(3) = 0.0
Identities = 184/275 (66%), Positives = 219/275 (79%)
Frame = +2 / +1
Query: 2 PAGKKKEGNAAKYITRTKAVNYLQVSLAIFRKLCILKGVFPRQPKKKVEGNHKTYYHTKD 181
P GKKKEGNAA+Y+TR++A+ +LQV+L +FR+LCI+KG+FPR+PKKK++GNH TYYH KD
Sbjct: 19 PTGKKKEGNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFPREPKKKIKGNHHTYYHVKD 198
Query: 182 IAFLAHDPLIEKFREIXXXXXXXXXXXXXXNRDLADRLLNRPPTYKLDRLVLERYPTFVD 361
IAFL H+PL+EKFREI N +LA LL R PTYKLDRL+ ERYPTF+D
Sbjct: 199 IAFLMHEPLLEKFREIKTYQKKVKKAKAKKNEELARLLLTRQPTYKLDRLIRERYPTFID 378
Query: 362 ALRDLDDCLTMVHLFAALPAVDGERVEVKRIHNCRRLSHEWQAYISRTHSLRKTFISVKG 541
ALRDLDDCLTMVHLFA LPA D E +EVKR+HNCRRL+HEWQAYISR+H+LRK F+SVKG
Sbjct: 379 ALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCRRLTHEWQAYISRSHALRKVFVSVKG 558
Query: 542 IYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLSFLEFYETLLGFVNFKLYHSINVNYP 721
IYYQAE++GQKITWLTPHA+QQV T+DVDF V+L+FLEFYETLL F+NFKLYHS+NV YP
Sbjct: 559 IYYQAEIEGQKITWLTPHAIQQVFTNDVDFGVLLTFLEFYETLLAFINFKLYHSLNVKYP 738
Query: 722 PILDPRXXXXXXXXXXXCRYMSAGSRRMIGNSQTD 826
PILD R RY+ A SR M + D
Sbjct: 739 PILDSRLEALAADLYALSRYIDASSRGMAVEPKVD 843
Score = 337 bits (730), Expect(3) = 0.0
Identities = 134/186 (72%), Positives = 158/186 (84%)
Frame = +2 / +1
Query: 905 SSKADESELRLAQLQHQLPTNEPGALMNLVEESXXXXXXXXXXXXCKGLFKNLKFYLSRE 1084
S+ +ESELRLAQLQHQLP++EPGALM+LV ++ CK LFK+LKF+LSRE
Sbjct: 862 SNDREESELRLAQLQHQLPSSEPGALMHLVADNNKEVEEDEETRVCKSLFKDLKFFLSRE 1041
Query: 1085 VPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQIVDRPTQSHVFLSREYVQPQWVFD 1264
VPRESL +I AFGG VSWEGEGAPFKE DE ITH I+D+P+ H++LSR YVQPQW++D
Sbjct: 1042 VPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHHIIDKPSAGHLYLSRVYVQPQWIYD 1221
Query: 1265 CVNARIILPTEGYLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIG 1444
CVNARIILPTE YLVGR+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G
Sbjct: 1222 CVNARIILPTEKYLVGRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVG 1401
Query: 1445 DEDLDN 1462
EDL++
Sbjct: 1402 KEDLED 1419
Score = 219 bits (473), Expect(4) = e-123
Identities = 105/180 (58%), Positives = 118/180 (65%)
Frame = -1 / -2
Query: 1458 SRSSSPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTLPTR*PSVGNMI 1279
SRSS P PG G+TS AAA SL +VSA SG PSASLST GDKCGGG LPT+ SVG ++
Sbjct: 1415 SRSSFPTPGNGSTSFLAAACSLLMVSA*SGTYPSASLSTNGDKCGGGILPTKYFSVGKIM 1236
Query: 1278 RAFTQSKTHCG*TYSLERKTWLCVGLXXXXXXXXXXXSLNGAPSPSHETVPPNAGIINNR 1099
RAFTQS HCG TY+LER W +GL SL GAPSPS +T+PP A I N R
Sbjct: 1235 RAFTQS*IHCGCTYTLERYKWPALGLSMI*CVILSSSSLKGAPSPSQDTIPPKAVITNCR 1056
Query: 1098 DSLGTSRLK*NFKFLNKPLQXXXXXXXXXXXXXXSTRFISAPGSLVGS*C*SCANLSSDS 919
DSLGTSRLK NF+ L L +TR I+APGSL GS C*SCA+LSSDS
Sbjct: 1055 DSLGTSRLKKNFRSLKSDLHTLVSSSSSTSLLLSATRCINAPGSLEGSWC*SCASLSSDS 876
Score = 202 bits (436), Expect(3) = 2e-066
Identities = 105/267 (39%), Positives = 153/267 (57%)
Frame = -3 / -1
Query: 805 HSSGTSRHVSAQCIELSS*SFQTWIQNRRIIYIY*MIEFEVHKS*KSLIEF*KRKHHIEI 626
H+SG +VS QCIE+ S S Q +++ R+ I M++ EV+K KSL++F + K ++
Sbjct: 822 HASGAGIYVSRQCIEICSQSLQPRVKDWRVFNIQRMVKLEVNKGKKSLVKFQEGKQDTKV 643
Query: 625 NIIS*YLLKSMRS*PGDLLSLNFGLIIYALHGNKCLPQRMGSGYVCLPFMA*PAAVMDSF 446
NII LL MR P DLL+ F LI+ L +K RM + V LPFM + V+DS
Sbjct: 642 NIICKNLLDCMRGQPSDLLTFYFSLIVNTLDRHKHFT*RMRT*NVSLPFMGQSSTVVDSL 463
Query: 445 DLNTFTVNSR*CRKQMHHCKAVIQVTKSINECWIPFKDKPIKLVSWWPIQQPVCKIPVFL 266
+ F V R* RK+M+H + VIQV++ IN+CWIP D+ IKLVS +Q CK+ VFL
Sbjct: 462 NFKIFPV*CR*HRKKMNHSETVIQVSQCINKCWIPLTDQSIKLVSRLAGEQKACKLLVFL 283
Query: 265 SNSLFNLPSMDLNLPELLDQRVMSEECNILCVVVGLVVPFHXXXXXXXXXXX*NA*LPKD 86
F+L + + P+LL +R++ EE N+L +VV ++V + N * P+
Sbjct: 282 GLGFFDLLLVCFDFPKLLKKRLVHEESNVLDMVVSVMVSLNLLLWFSGKYTFDNT*SPE* 103
Query: 85 CEANLQVVDRLGPRDVLCRIPFLLLTR 5
+ NL++ L P + RI FLL R
Sbjct: 102 IQVNLKMFKSLRPGHIPSRISFLLFPR 22
Score = 168 bits (362), Expect(4) = e-123
Identities = 89/135 (65%), Positives = 96/135 (71%)
Frame = -1 / -2
Query: 711 TFIE**SLKFTNPRRVS*NSRKESITLKSTSSVNTC*RACGVSQVIFCP*TSA**YMPFT 532
TF E *SLK RRVS*NS+K S T KSTS V TC A GV+QVIF P SA** +P T
Sbjct: 728 TFREW*SLKLIKARRVS*NSKKVSRTPKSTSFVKTCWIA*GVNQVIF*PSISA***IPLT 549
Query: 531 EINVFLREWVRDMYACHSWLNLRQLWIRLTSTRSPSTAGNAANRCTIVRQSSKSRRASTN 352
+ N R+M ACHSW+NLRQLW RLTS S S AGN A R TIVRQSSKSR AS N
Sbjct: 548 DTNTLRNA*EREM*ACHSWVNLRQLWTRLTSRFSLSDAGNTAKR*TIVRQSSKSRSASIN 369
Query: 351 VGYLSRTSLSSL*VG 307
VGYLSR +LSSL*VG
Sbjct: 368 VGYLSRINLSSL*VG 324
Score = 117 bits (250), Expect(5) = 2e-048
Identities = 66/163 (40%), Positives = 95/163 (58%)
Frame = +1 / +3
Query: 7 G*EEGRECGKVHHEDQGGQLPAS*PRNL*EAMHSKGCLSTSAKEEGGREPQDLLPHKGYC 186
G +EGR+CG V+ + +S* ++ E M+ + +S KEE +P LLP +G+C
Sbjct: 24 GEKEGRKCG*VYDQVASS*TSSS*LESIQETMYCQRYISPRTKEED*GKPSHLLPCQGHC 203
Query: 187 IPRS*PFDREVQGD*GPSKEG*KGCC*EKQGSCRQAVESATNLQA**ACP*KVSNIR*CS 366
P + EV G+ KEG K EK+G+C + T LQA** P*+VSNI *C+
Sbjct: 204 FPHARASS*EV*GNQNIPKEGQKSQGQEKRGACTPSAHPPTYLQA**IDP*EVSNIY*CT 383
Query: 367 S*LG*LPYNGASVCGITCC*R*TC*GQTNP*LPQVKP*MASIH 495
+ LG*L + G+S CG+TC + * +P L ++ P*MAS+H
Sbjct: 384 ARLG*LSHYGSSFCGVTCIRQGKS*S*ASPQLSKIDP*MASLH 512
Score = 96.8 bits (205), Expect(4) = e-123
Identities = 45/76 (59%), Positives = 50/76 (65%)
Frame = -1 / -2
Query: 228 ISLNFSIKGS*ARNAISFVW**VLWFPSTFFFG*RGKTPFRMHSFLKIARLTCR*LTALV 49
ISLNFS +GS R A+S W**V WFP FFFG RG P +HS L +LT R L A
Sbjct: 245 ISLNFSRRGSCMRKAMSLTW**V*WFPLIFFFGSRGNIPLTIHSLLNRFKLT*RCLRACD 66
Query: 48 LVMYFAAFPSFFLPAG 1
LV+Y AAFPSFF P G
Sbjct: 65 LVIYLAAFPSFFFPVG 18
Score = 73.5 bits (154), Expect(3) = 2e-066
Identities = 33/94 (35%), Positives = 54/94 (57%)
Frame = -3 / -1
Query: 1453 IFITNTWKRQHLIASSSLEPLYCLCILRHVALGIIVHKRRQMWWRYSSNKITFCWQYDTS 1274
I NTW+ +H ++ L I+R+V+ IVHK Q+W SS+++ F WQ S
Sbjct: 1410 ILFPNTWQWKHFVSCCCL*SFDGFGIIRNVSFCFIVHKW*QVWRWNSSDQVLFSWQDYAS 1231
Query: 1273 IYTIKDPLWLNILPGEENMALCRPINNLVSDIFV 1172
I+T+ DPLWL+I P + MA I++++ + +
Sbjct: 1230 IHTVIDPLWLHIYPRKVQMASAWLIDDMMCNTLI 1129
Score = 71.2 bits (149), Expect(5) = 2e-048
Identities = 28/76 (36%), Positives = 50/76 (65%)
Frame = +1 / +3
Query: 1216 PCFPLQGVCSTTVGL*LCKCSYHIANRRLSCWKSTSTTFVSFCGQ*CRGLHA*VCRDNKE 1395
P P G+C+TTV L*LC+CS+++AN ++ K+++ T V+ CGQ* R + +*+CR++++
Sbjct: 1173 PFVPF*GICATTVDL*LCECSHNLAN*KVLGRKNSTATLVTICGQ*SRRIRS*LCRNHQK 1352
Query: 1396 APSCCSQ*GVASSRYW 1443
+ + +R W
Sbjct: 1353 TTGSSKKRSASIARCW 1400
Score = 68.0 bits (142), Expect(5) = 2e-026
Identities = 36/75 (48%), Positives = 43/75 (57%)
Frame = +3 / +2
Query: 273 TGILQTGC*IGHQLTSLIGLSLKGIQHSLMLFVTWMTALQWCICLRHYLLLTVNVLRSNE 452
T L C + LTSLI S++GIQH LM TWMT W I LR YL T +L+ +E
Sbjct: 290 TRSLHAFCSPANLLTSLID*SVRGIQHLLMHCETWMTVSLWFIFLRCYLHQTGKILKLSE 469
Query: 453 SITAAG*AMNGKHTY 497
S T * MNGK T+
Sbjct: 470 STTVED*PMNGKLTF 514
Score = 55.6 bits (115), Expect(5) = 2e-026
Identities = 30/74 (40%), Positives = 38/74 (51%)
Frame = +3 / +2
Query: 1233 GSMFNHSGSLIV*MLVSYCQQKVILLEEYLHHICLLLWTMMPRATCLSMQRQ*RGSKLLL 1412
G M NHSGS+ V*ML CQ K EE+ H C LWTM + T L M + + +
Sbjct: 1190 GYMCNHSGSMTV*MLA*SCQLKSTWSEEFHRHTCHHLWTMKQKDTFLIMPKPSKDYRQQQ 1369
Query: 1413 AMRCCLFQVLVMKI 1454
+C QVL +I
Sbjct: 1370 ETKCFHCQVLGKRI 1411
Score = 49.2 bits (101), Expect(3) = 0.0
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +2 / +1
Query: 1448 EDLDNSLVAAMMDRTASNEAAEKKRKLEMLEKQYIDELKKEIDG 1579
ED N L A +M R EAA+ K+K+ EKQY +ELK EI+G
Sbjct: 1414 EDPQNLLYAGVMSRAEEAEAAKNKKKMAAQEKQYHEELKMEING 1545
Score = 34.5 bits (69), Expect(5) = 2e-048
Identities = 26/58 (44%), Positives = 31/58 (53%)
Frame = +3 / +2
Query: 537 RAYIIRPKFKDKRSPG*LRMLFSKY*LMMLISM*CFLF*NSMRLF*DL*TSNSIIQ*M 710
R + IR K K KRS G* M +K+ MML + C N RLF L TS+ I *M
Sbjct: 554 RVFTIRLK*KVKRSLG*PLMQSNKFLQMMLTLVSCLPSWNFTRLFLPLLTSSFTIL*M 727
Score = 34.1 bits (68), Expect(5) = 2e-048
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1 / +3
Query: 1501 RSC*KEEEAGDAREAIHR*TEEGN*WR 1581
RSC ++EE G A EAI TE+GN W+
Sbjct: 1467 RSCKEQEEDGGAGEAIP*GTEDGNKWK 1547
Score = 33.1 bits (66), Expect(5) = 2e-026
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = +3 / +2
Query: 6 RVRRRKGMRQSTSRGPRRSTTCKLASQSLGSYAF*RVSFHVSQRRRWKGTTRPTTTQRIL 185
R +RRK MR G + KL G Y +V F +QRRR + T TT R L
Sbjct: 23 RGKRRKEMRLGI*PGRKLLNIFKLT*IYSGDYVLSKVYFPENQRRRLRETITLTTMSRTL 202
Score = 31.8 bits (63), Expect(4) = e-123
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -2 / -3
Query: 1577 HQFPSSVHRCIASLASPASSSFQQLR 1500
H FPSSV IAS A P+SS QLR
Sbjct: 1543 HLFPSSVPHGIASPAPPSSSCSLQLR 1466
Score = 29.0 bits (57), Expect(3) = 2e-066
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3 / -1
Query: 991 KIHQCTRFIGWELMLKLC*SELR 923
++HQC+R +L+LKLC S+ R
Sbjct: 948 QMHQCSRLT*RQLVLKLCKSKFR 880
Score = 28.6 bits (56), Expect(5) = 2e-048
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 741 WKL*LLSSMHCADTCLLVPE 800
W+L L SMHC DT + PE
Sbjct: 758 WRLWLQISMHCLDT*MPAPE 817
Score = 27.2 bits (53), Expect(5) = 2e-026
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3 / +2
Query: 1503 KLLKRRGSWRC*RSNTSMN*RRKLMALLSL 1592
KL + R WR RSNT N*R K M + L
Sbjct: 1469 KLQRTRRRWRRRRSNTMRN*RWK*MEVRML 1558
Score = 26.3 bits (51), Expect(5) = 2e-026
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 535 EGHILSGRSSRTKDHL 582
+G++LSG + R+KDHL
Sbjct: 552 QGYLLSG*NRRSKDHL 599
>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project)
Length = 86574
Score = 136 bits (291), Expect(10) = e-167
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2 / -3
Query: 68 LQVSLAIFRKLCILKGVFPRQPKKKVEGNHKTYYHTKDIAFLAHDPLIEKFREIXXXXXX 247
L + + FR+LCI+KG+FPR+PKKK++GNH TYYH KDIAFL H+PL+EKFREI
Sbjct: 20776 LYLPIMYFRRLCIVKGIFPREPKKKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKK 20597
Query: 248 XXXXXXXXNRDLADRLLNRPPTYKLDRLVLERY 346
N +LA LL R PTYKLDRL+ ER+
Sbjct: 20596 VKKAKAKKNEELARLLLTRQPTYKLDRLIRERF 20498
Score = 112 bits (239), Expect(10) = e-167
Identities = 42/54 (77%), Positives = 50/54 (92%)
Frame = +2 / -2
Query: 1301 YLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
+ R+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 18452 FSTSRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 18291
Score = 96.8 bits (205), Expect(10) = e-167
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +2 / -3
Query: 329 LVLERYPTFVDALRDLDDCLTMVHLFAALPAVDGERVEVKRIHNCRR 469
L++ RYPTF+DALRDLDDCLTMVHLFA LPA D E +EVKR+HNCRR
Sbjct: 20416 LLMFRYPTFIDALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCRR 20276
Score = 84.0 bits (177), Expect(10) = e-167
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / -1
Query: 1193 IVDRPTQSHVFLSREYVQPQWVFDCVNARIILPTEGYLVGR 1315
I+D+P+ H++LSR YVQPQW++DCVNARIILPTE YLVGR
Sbjct: 18657 IIDKPSAGHLYLSRVYVQPQWIYDCVNARIILPTEKYLVGR 18535
Score = 84.0 bits (177), Expect(10) = e-167
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +2 / -1
Query: 905 SSKADESELRLAQLQHQLPTNEPGALMNLVEESXXXXXXXXXXXXCKGLFKNLKFYLSRE 1084
S+ +ESELRLAQLQHQLP++EPGALM+LV ++ CK LFK+LKF+LSRE
Sbjct: 19479 SNDREESELRLAQLQHQLPSSEPGALMHLVADNNKEVEEDEETRVCKSLFKDLKFFLSRE 19300
Query: 1085 V 1087
V
Sbjct: 19299 V 19297
Score = 79.0 bits (166), Expect(10) = e-167
Identities = 29/37 (78%), Positives = 35/37 (94%)
Frame = +2 / -3
Query: 554 AEVQGQKITWLTPHALQQVLTDDVDFNVMLSFLEFYE 664
AE++GQKITWLTPHA+QQV T+DVDF V+L+FLEFYE
Sbjct: 19999 AEIEGQKITWLTPHAIQQVFTNDVDFGVLLTFLEFYE 19889
Score = 75.8 bits (159), Expect(8) = 7e-065
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = -1 / +1
Query: 1458 SRSSSPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTL 1312
SRSS P PG G+TS AAA SL +VSA SG PSASLST GDKCGGG L
Sbjct: 18295 SRSSFPTPGNGSTSFLAAACSLLMVSA*SGTYPSASLSTNGDKCGGGIL 18441
Score = 71.6 bits (150), Expect(10) = e-167
Identities = 28/37 (75%), Positives = 30/37 (81%)
Frame = +2 / -2
Query: 1085 VPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQI 1195
VPRESL +I AFGG VSWEGEGAPFKE DE ITH +
Sbjct: 18845 VPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHHV 18735
Score = 70.7 bits (148), Expect(8) = 7e-065
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = -1 / +3
Query: 471 NLRQLWIRLTSTRSPSTAGNAANRCTIVRQSSKSRRASTNVGYLSRTSLS 322
+LRQLW RLTS S S AGN A R TIVRQSSKSR AS NVGYL+ +++
Sbjct: 20274 DLRQLWTRLTSRFSLSDAGNTAKR*TIVRQSSKSRSASINVGYLNINNIN 20423
Score = 66.1 bits (138), Expect(10) = e-167
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +2 / -2
Query: 467 RLSHEWQAYISRTHSLRKTFISVKGIYYQ 553
RL+HEWQAYISR+H+LRK F+SVKGIYYQ
Sbjct: 20174 RLTHEWQAYISRSHALRKVFVSVKGIYYQ 20088
Score = 66.1 bits (138), Expect(8) = 7e-065
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = -1 / +3
Query: 228 ISLNFSIKGS*ARNAISFVW**VLWFPSTFFFG*RGKTPFRMHSFLK 88
ISLNFS +GS R A+S W**V WFP FFFG RG P +HS LK
Sbjct: 20616 ISLNFSRRGSCMRKAMSLTW**V*WFPLIFFFGSRGNIPLTIHSLLK 20756
Score = 60.2 bits (125), Expect(8) = 7e-065
Identities = 29/56 (51%), Positives = 33/56 (58%)
Frame = -1 / +2
Query: 1086 TSRLK*NFKFLNKPLQXXXXXXXXXXXXXXSTRFISAPGSLVGS*C*SCANLSSDS 919
TSRLK NF+ L L +TR I+APGSL GS C*SCA+LSSDS
Sbjct: 19298 TSRLKKNFRSLKSDLHTLVSSSSSTSLLLSATRCINAPGSLEGSWC*SCASLSSDS 19465
Score = 56.1 bits (116), Expect(7) = 2e-032
Identities = 29/85 (34%), Positives = 45/85 (52%)
Frame = -3 / +2
Query: 343 PFKDKPIKLVSWWPIQQPVCKIPVFLSNSLFNLPSMDLNLPELLDQRVMSEECNILCVVV 164
P D+ IKLVS +Q CK+ VFL F+L + + P+LL +R++ EE N+L +VV
Sbjct: 20501 PLTDQSIKLVSRLAGEQKACKLLVFLGLGFFDLLLVCFDFPKLLKKRLVHEESNVLDMVV 20680
Query: 163 GLVVPFHXXXXXXXXXXX*NA*LPK 89
++V + N * P+
Sbjct: 20681 SVMVSLNLLLWFSGKYTFDNT*SPE 20755
Score = 56.1 bits (116), Expect(7) = 2e-032
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = -3 / +2
Query: 472 *PAAVMDSFDLNTFTVNSR*CRKQMHHCKAVIQVTKSINECWIP 341
*P+ V+DS + F V R* RK+M+H + VIQV++ IN+CWIP
Sbjct: 20273 *PSTVVDSLNFKIFPV*CR*HRKKMNHSETVIQVSQCINKCWIP 20404
Score = 55.6 bits (115), Expect(10) = e-167
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2 / -1
Query: 662 ETLLGFVNFKLYHSINVNYPPILDPR 739
+TLL F+NFKLYHS+NV YPPILD R
Sbjct: 19797 QTLLAFINFKLYHSLNVKYPPILDSR 19720
Score = 54.2 bits (112), Expect(8) = 7e-065
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = -1 / +2
Query: 1314 LPTR*PSVGNMIRAFTQSKTHCG*TYSLERKTWLCVGL 1201
LPT+ SVG ++RAFTQS HCG TY+LER W +GL
Sbjct: 18536 LPTKYFSVGKIMRAFTQS*IHCGCTYTLERYKWPALGL 18649
Score = 50.6 bits (104), Expect(10) = e-167
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = +2 / -2
Query: 8 GKKKEGNAAKYITRTKAVNYLQVSLAIFR 94
GKKKEGNAA+Y+TR++A+ +LQV+L +FR
Sbjct: 21071 GKKKEGNAARYMTRSQALKHLQVNLNLFR 20985
Score = 49.6 bits (102), Expect(7) = 2e-032
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -1 / +1
Query: 1164 LNGAPSPSHETVPPNAGIINNRDSLGTSRLK*NFKFLNKP 1045
L GAPSPS +T+PP A I N RDSLGT N+ +++P
Sbjct: 18766 LKGAPSPSQDTIPPKAVITNCRDSLGTYTSIQNYYTIDRP 18885
Score = 43.7 bits (89), Expect(7) = 2e-032
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -3 / +1
Query: 1312 SNKITFCWQYDTSIYTIKDPLWLNILPGEENMALCRPINNL 1190
S+++ F WQ SI+T+ DPLWL+I P + MA I++L
Sbjct: 18538 SDQVLFSWQDYASIHTVIDPLWLHIYPRKVQMASAWLIDDL 18660
Score = 42.3 bits (86), Expect(8) = 7e-065
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1 / +3
Query: 663 S*NSRKESITLKSTSSVNTC*RACGVSQVIFCP*TSA 553
S*NS+K S T KSTS V TC A GV+QVIF P SA
Sbjct: 19890 S*NSKKVSRTPKSTSFVKTCWIA*GVNQVIF*PSISA 20000
Score = 35.4 bits (71), Expect(8) = 7e-065
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -1 / +1
Query: 81 RLTCR*LTALVLVMYFAAFPSFFLP 7
+LT R L A LV+Y AAFPSFF P
Sbjct: 20998 KLT*RCLRACDLVIYLAAFPSFFFP 21072
Score = 34.1 bits (68), Expect(7) = 2e-032
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3 / +3
Query: 1453 IFITNTWKRQHLIASSSLEPLYCLCILRHVALGIIVHKRRQMW 1325
I NTW+ +H ++ L I+R+V+ IVHK Q+W
Sbjct: 18300 ILFPNTWQWKHFVSCCCL*SFDGFGIIRNVSFCFIVHKW*QVW 18428
Score = 33.1 bits (66), Expect(8) = 7e-065
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / +1
Query: 543 MPFTEINVFLREWVRDMYACHSWLNL 466
+P T+ N R+M ACHSW+NL
Sbjct: 20098 IPLTDTNTLRNA*EREM*ACHSWVNL 20175
Score = 32.7 bits (65), Expect(7) = 2e-032
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3 / +2
Query: 664 LIEF*KRKHHIEINIIS*YLLKSMRS*PGDLLSLNFGL 551
L++F + K ++NII LL MR P DLL+ F L
Sbjct: 19889 LVKFQEGKQDTKVNIICKNLLDCMRGQPSDLLTFYFSL 20002
Score = 29.0 bits (57), Expect(7) = 2e-032
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3 / +1
Query: 991 KIHQCTRFIGWELMLKLC*SELR 923
++HQC+R +L+LKLC S+ R
Sbjct: 19393 QMHQCSRLT*RQLVLKLCKSKFR 19461
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 136 bits (291), Expect(2) = 3e-052
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2 / -2
Query: 68 LQVSLAIFRKLCILKGVFPRQPKKKVEGNHKTYYHTKDIAFLAHDPLIEKFREIXXXXXX 247
L + + FR+LCI+KG+FPR+PKKK++GNH TYYH KDIAFL H+PL+EKFREI
Sbjct: 4466832 LYLPIMYFRRLCIVKGIFPREPKKKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKK 4466653
Query: 248 XXXXXXXXNRDLADRLLNRPPTYKLDRLVLERY 346
N +LA LL R PTYKLDRL+ ER+
Sbjct: 4466652 VKKAKAKKNEELARLLLTRQPTYKLDRLIRERF 4466554
Score = 112 bits (239), Expect(2) = 3e-052
Identities = 42/54 (77%), Positives = 50/54 (92%)
Frame = +2 / -1
Query: 1301 YLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
+ R+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 4464508 FSTSRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 4464347
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 136 bits (291), Expect(2) = 3e-052
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2 / -3
Query: 68 LQVSLAIFRKLCILKGVFPRQPKKKVEGNHKTYYHTKDIAFLAHDPLIEKFREIXXXXXX 247
L + + FR+LCI+KG+FPR+PKKK++GNH TYYH KDIAFL H+PL+EKFREI
Sbjct: 4683859 LYLPIMYFRRLCIVKGIFPREPKKKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKK 4683680
Query: 248 XXXXXXXXNRDLADRLLNRPPTYKLDRLVLERY 346
N +LA LL R PTYKLDRL+ ER+
Sbjct: 4683679 VKKAKAKKNEELARLLLTRQPTYKLDRLIRERF 4683581
Score = 112 bits (239), Expect(2) = 3e-052
Identities = 42/54 (77%), Positives = 50/54 (92%)
Frame = +2 / -2
Query: 1301 YLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
+ R+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 4681535 FSTSRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 4681374
>gb|B98658.1|B98658 F19B7TFB IGF Arabidopsis thaliana genomic clone F19B7, DNA sequence
Length = 447
Score = 84.0 bits (177), Expect(2) = 2e-029
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / -3
Query: 1193 IVDRPTQSHVFLSREYVQPQWVFDCVNARIILPTEGYLVGR 1315
I+D+P+ H++LSR YVQPQW++DCVNARIILPTE YLVGR
Sbjct: 229 IIDKPSAGHLYLSRVYVQPQWIYDCVNARIILPTEKYLVGR 107
Score = 69.3 bits (145), Expect(2) = 2e-029
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = +2 / -1
Query: 1085 VPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQI 1195
VPRESL +I AFGG VSWEGEGAPFKE +E ITH +
Sbjct: 417 VPRESLQLVITAFGGMVSWEGEGAPFKEDNESITHHV 307
>emb|AL771160.1| Arabidopsis thaliana T-DNA flanking sequence GK-177H07-013519,
genomic survey sequence
Length = 667
Score = 124 bits (266), Expect = 9e-027
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +2 / -2
Query: 86 IFRKLCILKGVFPRQPKKKVEGNHKTYYHTKDIAFLAHDPLIEKFREIXXXXXXXXXXXX 265
+F++ +KG+FPR+PKKK++GNH TYYH KDIAFL H+PL+EKFREI
Sbjct: 582 VFQETMYVKGIFPREPKKKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKKVKKAKA 403
Query: 266 XXNRDLADRLLNRPPTYKLDRLVLERY 346
N +LA LL R PTYKLDRL+ ER+
Sbjct: 402 KKNEELARLLLTRQPTYKLDRLIRERF 322
>gb|BH633232.1|BH633232 SALK_041045 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_041045, DNA sequence
Length = 456
Score = 109 bits (233), Expect = 3e-022
Identities = 41/49 (83%), Positives = 48/49 (97%)
Frame = +2 / -1
Query: 1316 VPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 420 IPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 274
>emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project)
Length = 100269
Score = 109 bits (233), Expect = 3e-022
Identities = 41/49 (83%), Positives = 48/49 (97%)
Frame = +2 / -3
Query: 1316 VPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
+PPPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 100267 IPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 100121
>gb|B97803.1|B97803 F18O22TRB IGF Arabidopsis thaliana genomic clone F18O22, DNA sequence
Length = 385
Score = 105 bits (223), Expect(2) = 6e-022
Identities = 40/47 (85%), Positives = 46/47 (97%)
Frame = +2 / +3
Query: 1322 PPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDN 1462
PPHLSPFVDN+AEGY+P+YAETIKRLQAAARNEVLPLPG+G EDL++
Sbjct: 3 PPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLED 143
Score = 25.8 bits (50), Expect(2) = 6e-022
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 1538 EKQYIDELKKEIDG 1579
EKQY +ELK EI+G
Sbjct: 319 EKQYHEELKMEING 360
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,861,482,992
Number of Sequences: 1013581
Number of extensions: 52634312
Number of successful extensions: 228891
Number of sequences better than 1.0e-020: 13
length of database: 302,980,290
effective HSP length: 59
effective length of database: 243,179,011
effective search space used: 157093641106
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)