TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK118505.1|CK118505 216n03.p1 AtM1 Arabidopsis thaliana ... 105 2e-021
gb|CB254205.1|CB254205 76-E015392-019-006-G20-T7R MPIZ-ADIS... 105 2e-021
gb|BT004686.1| Arabidopsis thaliana At1g26948 gene, complet... 105 2e-021
emb|BX818729.1|CNS0AAMY Arabidopsis thaliana Full-length cD... 105 2e-021
dbj|AK119110.1| Arabidopsis thaliana mRNA for unknown prote... 105 2e-021
ref|NM_179381.1| Arabidopsis thaliana transcription regulat... 105 2e-021
gb|AU239992.1|AU239992 AU239992 RAFL21 Arabidopsis thaliana... 102 1e-020
gb|BP862499.1|BP862499 BP862499 RAFL21 Arabidopsis thaliana... 95 2e-018
gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BA... 83 1e-015
ref|NM_202643.1| Arabidopsis thaliana transcription regulat... 86 1e-015
gb|AQ956889.1|AQ956889 LERAM62TF LERA Arabidopsis thaliana ... 83 1e-014
emb|BX534369.1| Arabidopsis thaliana T-DNA flanking sequenc... 83 1e-014
emb|BX534370.1| Arabidopsis thaliana T-DNA flanking sequenc... 83 1e-014
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 83 1e-014
gb|AY088680.1| Arabidopsis thaliana clone 91777 mRNA, compl... 83 1e-014
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 83 1e-014
gb|CW795106.1|CW795106 WiscDsLox417B03 Arabidopsis thaliana... 82 2e-014
dbj|AP000386.1| Arabidopsis thaliana genomic DNA, chromosom... 82 2e-014
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 82 2e-014
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 82 2e-014
gb|BX838692.1|BX838692 BX838692 Arabidopsis thaliana Flower... 70 9e-014
gb|AY088246.1| Arabidopsis thaliana clone 4734 mRNA, comple... 80 9e-014
emb|BX833243.1|CNS09Z7E Arabidopsis thaliana Full-length cD... 80 9e-014
emb|BX833809.1|CNS09Z8D Arabidopsis thaliana Full-length cD... 80 9e-014
emb|BX833038.1|CNS0A0A9 Arabidopsis thaliana Full-length cD... 80 9e-014
ref|NM_123349.2| Arabidopsis thaliana DNA binding / transcr... 80 9e-014
emb|BX534368.1| Arabidopsis thaliana T-DNA flanking sequenc... 79 2e-013
gb|BE038991.1|BE038991 AB08B12 AB Arabidopsis thaliana cDNA... 75 3e-012
gb|AU239767.1|AU239767 AU239767 RAFL21 Arabidopsis thaliana... 75 3e-012
gb|BT005460.1| Arabidopsis thaliana clone U51275 putative b... 75 3e-012
dbj|AB010077.1| Arabidopsis thaliana genomic DNA, chromosom... 75 3e-012
dbj|AK118887.1| Arabidopsis thaliana At5g15160 mRNA for unk... 75 3e-012
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 75 3e-012
ref|NM_121520.2| Arabidopsis thaliana DNA binding / transcr... 75 3e-012
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 75 3e-012
emb|BX834081.1|CNS09Z63 Arabidopsis thaliana Full-length cD... 74 4e-012
gb|CL481511.1|CL481511 SAIL_342_B12.v1 SAIL Collection Arab... 74 6e-012
emb|BX831979.1|CNS0A10I Arabidopsis thaliana Full-length cD... 73 1e-011
emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome ... 73 1e-011
gb|BP627274.1|BP627274 BP627274 RAFL17 Arabidopsis thaliana... 60 1e-010
gb|AA650937.1|AA650937 31051 Lambda-PRL2 Arabidopsis thalia... 67 9e-010
gb|CL494652.1|CL494652 SAIL_598_H10.v1 SAIL Collection Arab... 63 1e-008
gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BA... 61 4e-008
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 61 4e-008
gb|AU226039.1|AU226039 AU226039 RAFL14 Arabidopsis thaliana... 61 6e-008
gb|AV549464.1|AV549464 AV549464 Arabidopsis thaliana roots ... 61 6e-008
gb|BT003046.1| Arabidopsis thaliana At1g74500 gene, complet... 61 6e-008
gb|AY088286.1| Arabidopsis thaliana clone 519 mRNA, complet... 61 6e-008
ref|NM_106110.1| Arabidopsis thaliana DNA binding / transcr... 61 6e-008
emb|BX659456.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 8e-008
gb|AU231111.1|AU231111 AU231111 RAFL21 Arabidopsis thaliana... 49 1e-007
gb|AU231360.1|AU231360 AU231360 RAFL21 Arabidopsis thaliana... 59 2e-007
gb|AI993971.1|AI993971 701495296 A. thaliana, Ohio State cl... 58 3e-007
ref|NM_114639.2| Arabidopsis thaliana DNA binding / transcr... 58 3e-007
gb|CC456516.1|CC456516 SALK_098909.54.00.n Arabidopsis thal... 57 5e-007
emb|AJ521977.1|ATH521977 Arabidopsis thaliana T-DNA flankin... 57 5e-007
emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome ... 57 5e-007
emb|AJ531069.1|ATH531069 Arabidopsis thaliana T-DNA flankin... 57 7e-007
emb|AJ531049.1|ATH531049 Arabidopsis thaliana T-DNA flankin... 56 2e-006
gb|BP656312.1|BP656312 BP656312 RAFL19 Arabidopsis thaliana... 50 8e-005
gb|CC456508.1|CC456508 SALK_098881.40.40.n Arabidopsis thal... 41 0.034
gb|T43062.1|T43062 6325 Lambda-PRL2 Arabidopsis thaliana cD... 41 0.047
gb|R89968.1|R89968 16323 Lambda-PRL2 Arabidopsis thaliana c... 37 0.60
emb|AX059504.1| Sequence 237 from Patent WO0055325 35 4.0
emb|AX059523.1| Sequence 256 from Patent WO0055325 35 4.0
gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 ... 35 4.0
gb|AC004483.3| Arabidopsis thaliana chromosome 2 clone T12J... 35 4.0
dbj|AB028619.1| Arabidopsis thaliana genomic DNA, chromosom... 35 4.0
ref|NM_126779.1| Arabidopsis thaliana unknown protein AT2G0... 35 4.0
ref|NM_112428.1| Arabidopsis thaliana unknown protein AT3G1... 35 4.0
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 35 4.0
emb|CS226246.1| Sequence 29 from Patent WO2005098015 35 4.0
gb|AV532585.1|AV532585 AV532585 Arabidopsis thaliana flower... 34 5.5
gb|BH756745.1|BH756745 SALK_054153.53.60.n Arabidopsis thal... 29 9.2
gb|CL471314.1|CL471314 SAIL_157_H07.v1 SAIL Collection Arab... 31 9.9
>gb|CK118505.1|CK118505 216n03.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011N03216
5-PRIME, mRNA sequence
Length = 518
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 147 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 326
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 327 SAEAAIIRSLL 359
>gb|CB254205.1|CB254205 76-E015392-019-006-G20-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768G206Q 5-PRIME, mRNA sequence
Length = 572
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 155 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 334
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 335 SAEAAIIRSLL 367
>gb|BT004686.1| Arabidopsis thaliana At1g26948 gene, complete cds
Length = 285
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 64 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 243
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 244 SAEAAIIRSLL 276
>emb|BX818729.1|CNS0AAMY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL95ZD01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 658
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 165 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 344
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 345 SAEAAIIRSLL 377
>dbj|AK119110.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone:
RAFL21-46-D20
Length = 687
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 181 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 360
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 361 SAEAAIIRSLL 393
>ref|NM_179381.1| Arabidopsis thaliana transcription regulator AT1G26945 mRNA,
complete cds
Length = 688
Score = 105 bits (223), Expect = 2e-021
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 181 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 360
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 361 SAEAAIIRSLL 393
>gb|AU239992.1|AU239992 AU239992 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-46-D20 5',
mRNA sequence
Length = 606
Score = 102 bits (218), Expect = 1e-020
Identities = 43/71 (60%), Positives = 57/71 (80%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHRE DDLSDRLS+L+AS D N
Sbjct: 181 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREXDDLSDRLSELLASTDDN 360
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 361 SAEAAIIRSLL 393
>gb|BP862499.1|BP862499 BP862499 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-63-G18 5',
mRNA sequence
Length = 378
Score = 95.5 bits (202), Expect = 2e-018
Identities = 39/66 (59%), Positives = 53/66 (80%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 180 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASRDDN 359
Query: 534 SPGAEI 517
S A I
Sbjct: 360 SAEAAI 377
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
sequence
Length = 85372
Score = 83.1 bits (175), Expect(2) = 1e-015
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 60229 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 60378
Score = 31.3 bits (62), Expect(2) = 1e-015
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTK 634
I++L+S+LQ L+P RRR + T+K
Sbjct: 59547 ISDLVSKLQHLIPELRRRRSDKVYTSK 59627
>ref|NM_202643.1| Arabidopsis thaliana transcription regulator AT3G28857 mRNA,
complete cds
Length = 739
Score = 85.8 bits (181), Expect = 1e-015
Identities = 35/61 (57%), Positives = 48/61 (78%)
Frame = -1 / +3
Query: 666 RRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKS 487
RR + S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P +
Sbjct: 420 RRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSN 599
Query: 486 V 484
+
Sbjct: 600 I 602
>gb|AQ956889.1|AQ956889 LERAM62TF LERA Arabidopsis thaliana genomic clone LERAM62, DNA
sequence
Length = 768
Score = 83.1 bits (175), Expect = 1e-014
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / -2
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 170 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 21
>emb|BX534369.1| Arabidopsis thaliana T-DNA flanking sequence GK-508G12-019530,
genomic survey sequence
Length = 365
Score = 83.1 bits (175), Expect = 1e-014
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / +2
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 95 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 244
>emb|BX534370.1| Arabidopsis thaliana T-DNA flanking sequence GK-508G12-019540,
genomic survey sequence
Length = 381
Score = 83.1 bits (175), Expect = 1e-014
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / +3
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 63 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 212
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 83.1 bits (175), Expect = 1e-014
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / +2
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 9360923 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 9361072
>gb|AY088680.1| Arabidopsis thaliana clone 91777 mRNA, complete sequence
Length = 740
Score = 83.1 bits (175), Expect = 1e-014
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = -1 / +1
Query: 666 RRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKS 487
RR + S + +L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P +
Sbjct: 421 RRRSDKVSASXVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSN 600
Query: 486 V 484
+
Sbjct: 601 I 603
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 83.1 bits (175), Expect = 1e-014
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 9352303 QVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 9352452
Score = 61.1 bits (127), Expect = 4e-008
Identities = 22/37 (59%), Positives = 33/37 (89%)
Frame = -1 / -3
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
Q S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 28002111 QVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 28002001
Score = 34.5 bits (69), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1 / -1
Query: 319 VLGYIQLLYAWVHTHTRQCAEIWRWREAGRRPWME 423
+ Y Q+ W HT +QC+ I+ W E R W++
Sbjct: 25039508 IYAY*QVTM*WNHTKNKQCSGIYLWHEEIRVRWVQ 25039404
>gb|CW795106.1|CW795106 WiscDsLox417B03 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 861
Score = 81.7 bits (172), Expect = 2e-014
Identities = 33/54 (61%), Positives = 45/54 (83%)
Frame = -1 / -2
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKSV 484
S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P ++
Sbjct: 524 SASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSNI 363
>dbj|AP000386.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MLD15
Length = 82430
Score = 81.7 bits (172), Expect = 2e-014
Identities = 33/54 (61%), Positives = 45/54 (83%)
Frame = -1 / -1
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKSV 484
S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P ++
Sbjct: 2216 SASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSNI 2055
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 81.7 bits (172), Expect = 2e-014
Identities = 33/54 (61%), Positives = 45/54 (83%)
Frame = -1 / -1
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKSV 484
S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P ++
Sbjct: 10779834 SASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSNI 10779673
Score = 57.4 bits (119), Expect = 5e-007
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -1 / +1
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 17555341 GYFQVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 17555460
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 5268896 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 5268994
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 81.7 bits (172), Expect = 2e-014
Identities = 33/54 (61%), Positives = 45/54 (83%)
Frame = -1 / -1
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR*PKSV 484
S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +SP A +IRSLL *P ++
Sbjct: 10857167 SASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM*PSNI 10857006
Score = 57.4 bits (119), Expect = 5e-007
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -1 / +1
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 17602279 GYFQVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 17602398
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +1
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 5281060 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 5281158
>gb|BX838692.1|BX838692 BX838692 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB81ZF06 5PRIM, mRNA sequence
Length = 1069
Score = 70.3 bits (147), Expect(2) = 9e-014
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGA 523
Q S +K+L+ETC YI++LHREVDDLSDRLS+L+AS D +P +
Sbjct: 847 QVSASKVLQETCHYIRNLHREVDDLSDRLSELLASTDDTAPSS 975
Score = 31.3 bits (62), Expect(2) = 9e-014
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTK 634
I++L+S+LQ L+P RRR + T+K
Sbjct: 165 ISDLVSKLQHLIPELRRRRSDKVYTSK 245
>gb|AY088246.1| Arabidopsis thaliana clone 4734 mRNA, complete sequence
Length = 712
Score = 79.9 bits (168), Expect = 9e-014
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = -1 / +1
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 367 QILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 546
Query: 510 SLL 502
SLL
Sbjct: 547 SLL 555
>emb|BX833243.1|CNS09Z7E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL40ZC07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 592
Score = 79.9 bits (168), Expect = 9e-014
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = -1 / +2
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 317 QILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 496
Query: 510 SLL 502
SLL
Sbjct: 497 SLL 505
>emb|BX833809.1|CNS09Z8D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL78ZE10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 495
Score = 79.9 bits (168), Expect = 9e-014
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = -1 / +3
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 273 QILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 452
Query: 510 SLL 502
SLL
Sbjct: 453 SLL 461
>emb|BX833038.1|CNS0A0A9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL31ZA09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 636
Score = 79.9 bits (168), Expect = 9e-014
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = -1 / +2
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 290 QILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 469
Query: 510 SLL 502
SLL
Sbjct: 470 SLL 478
>ref|NM_123349.2| Arabidopsis thaliana DNA binding / transcription factor AT5G39860
mRNA, complete cds
Length = 703
Score = 79.9 bits (168), Expect = 9e-014
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = -1 / +3
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 357 QILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 536
Query: 510 SLL 502
SLL
Sbjct: 537 SLL 545
>emb|BX534368.1| Arabidopsis thaliana T-DNA flanking sequence GK-508G12-019518,
genomic survey sequence
Length = 283
Score = 78.5 bits (165), Expect = 2e-013
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = -1 / +3
Query: 636 KLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
K+L+ETC+YI++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 3 KVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 137
>gb|BE038991.1|BE038991 AB08B12 AB Arabidopsis thaliana cDNA 5' similar to dna-binding
protein, mRNA sequence
Length = 709
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = -1 / -1
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q++ + R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IR
Sbjct: 475 QSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIR 296
Query: 510 SLL 502
SL+
Sbjct: 295 SLI 287
>gb|AU239767.1|AU239767 AU239767 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-22-D11 5',
mRNA sequence
Length = 443
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = -1 / +2
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q++ + R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IR
Sbjct: 170 QSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIR 349
Query: 510 SLL 502
SL+
Sbjct: 350 SLI 358
>gb|BT005460.1| Arabidopsis thaliana clone U51275 putative bHLH protein (At5g15160)
mRNA, complete cds
Length = 314
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = -1 / +1
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q++ + R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IR
Sbjct: 88 QSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIR 267
Query: 510 SLL 502
SL+
Sbjct: 268 SLI 276
>dbj|AB010077.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH19
Length = 77380
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/50 (60%), Positives = 44/50 (88%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
+AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IRSLL
Sbjct: 10732 KASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLL 10881
>dbj|AK118887.1| Arabidopsis thaliana At5g15160 mRNA for unknown protein, complete
cds, clone: RAFL21-22-D11
Length = 589
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = -1 / +2
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q++ + R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IR
Sbjct: 170 QSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIR 349
Query: 510 SLL 502
SL+
Sbjct: 350 SLI 358
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/50 (60%), Positives = 44/50 (88%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
+AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IRSLL
Sbjct: 14648320 KASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLL 14648469
Score = 72.5 bits (152), Expect = 1e-011
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = -1 / -2
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IRSL+
Sbjct: 4704615 SASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 4704472
>ref|NM_121520.2| Arabidopsis thaliana DNA binding / transcription factor AT5G15160
mRNA, complete cds
Length = 588
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = -1 / +2
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q++ + R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IR
Sbjct: 170 QSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIR 349
Query: 510 SLL 502
SL+
Sbjct: 350 SLI 358
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 74.8 bits (157), Expect = 3e-012
Identities = 30/50 (60%), Positives = 44/50 (88%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
+AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +SP A +IRSLL
Sbjct: 15975376 KASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLL 15975525
Score = 72.5 bits (152), Expect = 1e-011
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = -1 / -3
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IRSL+
Sbjct: 4921642 SASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 4921499
>emb|BX834081.1|CNS09Z63 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL94ZF05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 590
Score = 74.4 bits (156), Expect = 4e-012
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = -1 / +3
Query: 690 QTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIR 511
Q L +RR +AS +K+L ETC+ I++L+REVD+LS+RLS L+ S+D +SP A +IR
Sbjct: 315 QILPEIGQRRRSDKASASKVLLETCNNIRNLNREVDNLSERLSQLLESVDEDSPEAAVIR 494
Query: 510 SLL 502
SLL
Sbjct: 495 SLL 503
>gb|CL481511.1|CL481511 SAIL_342_B12.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_342_B12.v1, DNA sequence
Length = 877
Score = 73.9 bits (155), Expect = 6e-012
Identities = 31/50 (62%), Positives = 40/50 (80%)
Frame = -1 / +3
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S +K+L+ETC+YI++LHRE DDL DRL++L+AS D N A IIRSLL
Sbjct: 345 QVSASKVLQETCNYIRNLHREGDDLRDRLTELLASTDDNRAEAAIIRSLL 494
>emb|BX831979.1|CNS0A10I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH43ZC10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1105
Score = 72.5 bits (152), Expect = 1e-011
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = -1 / +3
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IRSL+
Sbjct: 786 SASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 929
>emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project)
Length = 103996
Score = 72.5 bits (152), Expect = 1e-011
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = -1 / -2
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D NSP A +IRSL+
Sbjct: 25551 SASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 25408
>gb|BP627274.1|BP627274 BP627274 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-I11 3',
mRNA sequence
Length = 439
Score = 59.7 bits (124), Expect(2) = 1e-010
Identities = 22/33 (66%), Positives = 31/33 (93%)
Frame = -1 / -2
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLM 553
+ S +K+L+ETC+YI++LHREVDDLSDRLS+L+
Sbjct: 435 KVSASKVLQETCNYIRNLHREVDDLSDRLSELL 337
Score = 28.6 bits (56), Expect(2) = 1e-010
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 552 ASMDHNSPGAEIIRSLL 502
AS DHNS A IIRSLL
Sbjct: 335 ASTDHNSAEAAIIRSLL 285
>gb|AA650937.1|AA650937 31051 Lambda-PRL2 Arabidopsis thaliana cDNA clone 161C12XP 3', mRNA
sequence
Length = 515
Score = 66.6 bits (139), Expect = 9e-010
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = -1 / +3
Query: 672 ARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
A+ R + S +K+L+ET +YI++L++E DDL DRL+ L+ S+D NSP A +IR L+
Sbjct: 114 AQTRRSNTVSASKVLQETXNYIRNLNKEADDLRDRLTQLLESIDPNSPQAAVIRXLI 284
>gb|CL494652.1|CL494652 SAIL_598_H10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_598_H10.v1, DNA sequence
Length = 991
Score = 62.9 bits (131), Expect = 1e-008
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = -1 / +3
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q S K L+ET Y K+LHRE DDLSDRL++L+ D N+ A IIRSLL
Sbjct: 228 QVSACKRLRETGYYYKNLHREGDDLSDRLAELLVLTDDNNAEATIIRSLL 377
>gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M20 genomic sequence, complete
sequence
Length = 134402
Score = 61.1 bits (127), Expect = 4e-008
Identities = 22/37 (59%), Positives = 33/37 (89%)
Frame = -1 / -1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
Q S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 54770 QVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 54660
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 61.1 bits (127), Expect = 4e-008
Identities = 22/37 (59%), Positives = 33/37 (89%)
Frame = -1 / -3
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
Q S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 12239769 QVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 12239659
Score = 34.5 bits (69), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1 / -2
Query: 319 VLGYIQLLYAWVHTHTRQCAEIWRWREAGRRPWME 423
+ Y Q+ W HT +QC+ I+ W E R W++
Sbjct: 9277159 IYAY*QVTM*WNHTKNKQCSGIYLWHEEIRVRWVQ 9277055
>gb|AU226039.1|AU226039 AU226039 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-05-N07 3',
mRNA sequence
Length = 418
Score = 60.6 bits (126), Expect = 6e-008
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / -3
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 287 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 165
>gb|AV549464.1|AV549464 AV549464 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ08a09R 5', mRNA sequence
Length = 423
Score = 60.6 bits (126), Expect = 6e-008
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 205 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 327
>gb|BT003046.1| Arabidopsis thaliana At1g74500 gene, complete cds
Length = 282
Score = 60.6 bits (126), Expect = 6e-008
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 118 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 240
>gb|AY088286.1| Arabidopsis thaliana clone 519 mRNA, complete sequence
Length = 557
Score = 60.6 bits (126), Expect = 6e-008
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 271 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 393
>ref|NM_106110.1| Arabidopsis thaliana DNA binding / transcription factor AT1G74500
mRNA, complete cds
Length = 557
Score = 60.6 bits (126), Expect = 6e-008
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 271 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD 393
>emb|BX659456.1| Arabidopsis thaliana T-DNA flanking sequence GK-646C02-022819,
genomic survey sequence
Length = 184
Score = 60.2 bits (125), Expect = 8e-008
Identities = 23/40 (57%), Positives = 36/40 (90%)
Frame = -1 / -1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +S
Sbjct: 166 KASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDS 47
>gb|AU231111.1|AU231111 AU231111 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-22-D11 3',
mRNA sequence
Length = 399
Score = 48.7 bits (100), Expect(2) = 1e-007
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = -1 / -3
Query: 606 KSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
K L +E DDLSDRL+ L+ S+D NSP +IRSL+
Sbjct: 337 KKLEQEADDLSDRLTQLLESIDPNSPQPPVIRSLI 233
Score = 29.5 bits (58), Expect(2) = 1e-007
Identities = 9/19 (47%), Positives = 18/19 (94%)
Frame = -1 / -1
Query: 645 STTKLLKETCSYIKSLHRE 589
S +K+L+ETC+YI++L+++
Sbjct: 375 SASKVLQETCNYIRNLNKK 319
>gb|AU231360.1|AU231360 AU231360 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-46-D20 3',
mRNA sequence
Length = 420
Score = 58.8 bits (122), Expect = 2e-007
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -1 / -2
Query: 606 KSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
++LHREVDDLSDRLS+L+AS D NS A IIRSLL
Sbjct: 401 QNLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 297
>gb|AI993971.1|AI993971 701495296 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495296, mRNA sequence
Length = 470
Score = 58.3 bits (121), Expect = 3e-007
Identities = 21/39 (53%), Positives = 33/39 (84%)
Frame = -1 / -1
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAS 547
R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+
Sbjct: 317 RRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 201
>ref|NM_114639.2| Arabidopsis thaliana DNA binding / transcription factor AT3G47710
mRNA, complete cds
Length = 279
Score = 58.3 bits (121), Expect = 3e-007
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -1 / +1
Query: 672 ARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
A R + S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 106 ANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 237
>gb|CC456516.1|CC456516 SALK_098909.54.00.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_098909.54.00.n,
DNA sequence
Length = 461
Score = 57.4 bits (119), Expect = 5e-007
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -1 / +3
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 78 GYFQVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 197
>emb|AJ521977.1|ATH521977 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
282F03
Length = 603
Score = 57.4 bits (119), Expect = 5e-007
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -1 / -3
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 316 GYFQVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 197
>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
Length = 92493
Score = 57.4 bits (119), Expect = 5e-007
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -1 / +3
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 15459 GYFQVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 15578
>emb|AJ531069.1|ATH531069 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
224G10
Length = 805
Score = 57.0 bits (118), Expect = 7e-007
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -1 / -3
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q S + +L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 548 GSFQVSASGVLQETCSYIRNLSKEVDDLSERLSQLLESTD 429
>emb|AJ531049.1|ATH531049 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
224B10
Length = 798
Score = 55.6 bits (115), Expect = 2e-006
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -1 / -2
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
G Q +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 548 GTFQVPASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD 429
>gb|BP656312.1|BP656312 BP656312 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-25-I15 3',
mRNA sequence
Length = 423
Score = 50.1 bits (103), Expect = 8e-005
Identities = 18/27 (66%), Positives = 25/27 (92%)
Frame = -1 / -1
Query: 639 TKLLKETCSYIKSLHREVDDLSDRLSD 559
+K+L+ETC+YI++LHRE DDLSDR S+
Sbjct: 423 SKVLQETCNYIRNLHREFDDLSDRFSN 343
>gb|CC456508.1|CC456508 SALK_098881.40.40.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_098881.40.40.n,
DNA sequence
Length = 340
Score = 41.4 bits (84), Expect = 0.034
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -1 / +1
Query: 618 CSYIKSLHREVDDLSDRLSDLMASMD 541
C+YI +L +EVDDLS+RLS L+ S D
Sbjct: 1 CTYIMNLSKEVDDLSERLSQLLESTD 78
>gb|T43062.1|T43062 6325 Lambda-PRL2 Arabidopsis thaliana cDNA clone 116H15T7, mRNA
sequence
Length = 457
Score = 40.9 bits (83), Expect = 0.047
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1 / +2
Query: 663 RGGSQASTTKLLKETCSYIKSLHREVDDL 577
R + S ++L++TC+YI++LH EVDDL
Sbjct: 245 RRSDKVSAARVLQDTCNYIRNLHXEVDDL 331
>gb|R89968.1|R89968 16323 Lambda-PRL2 Arabidopsis thaliana cDNA clone 187B14T7, mRNA
sequence
Length = 607
Score = 37.3 bits (75), Expect = 0.60
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1 / +2
Query: 346 AWVHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRRAWP 471
AW H H R+ WR + R W+ + + R ++ WP
Sbjct: 305 AWHHCHAREAPCYWRKQNQXSRSWVLKSALRGPFSFWHEDWP 430
>emb|AX059504.1| Sequence 237 from Patent WO0055325
Length = 36972
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 17300 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 17398
>emb|AX059523.1| Sequence 256 from Patent WO0055325
Length = 37059
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 17708 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 17806
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
sequence
Length = 90387
Score = 34.5 bits (69), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1 / -3
Query: 319 VLGYIQLLYAWVHTHTRQCAEIWRWREAGRRPWME 423
+ Y Q+ W HT +QC+ I+ W E R W++
Sbjct: 65548 IYAY*QVTM*WNHTKNKQCSGIYLWHEEIRVRWVQ 65444
>gb|AC004483.3| Arabidopsis thaliana chromosome 2 clone T12J2 map mi421, complete
sequence
Length = 85463
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +1
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 66112 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 66210
>dbj|AB028619.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MQD17
Length = 22199
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +1
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 12604 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 12702
>ref|NM_126779.1| Arabidopsis thaliana unknown protein AT2G07770 mRNA, complete cds
Length = 1557
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 1193 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 1291
>ref|NM_112428.1| Arabidopsis thaliana unknown protein AT3G15600 mRNA, complete cds
Length = 1776
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 1412 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 1510
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 3588575 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 3588673
>emb|CS226246.1| Sequence 29 from Patent WO2005098015
Length = 1557
Score = 34.5 bits (69), Expect = 4.0
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1 / +2
Query: 328 YIQLLYAWVHTHTRQCAEIWRWREAGRRPWMER 426
+++++ W+ T++C ++ RW E R+ W+ +
Sbjct: 1193 WLRVMERWMERRTKRCLKMMRWMERRRKRWLSQ 1291
>gb|AV532585.1|AV532585 AV532585 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB045a02F 3', mRNA sequence
Length = 360
Score = 34.1 bits (68), Expect = 5.5
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1 / -1
Query: 570 RLSDLMASMDHNSPGAEIIRSLL 502
RLS+L+AS D NS A IIRSLL
Sbjct: 360 RLSELLASTDDNSAEAAIIRSLL 292
>gb|BH756745.1|BH756745 SALK_054153.53.60.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_054153.53.60.n,
DNA sequence
Length = 461
Score = 29.5 bits (58), Expect(2) = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 489 SVRPAGRPRAPHICSICA 436
+V P G PR+P CS+CA
Sbjct: 292 AVFPPGPPRSPGACSVCA 345
Score = 22.6 bits (43), Expect(2) = 9.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / +3
Query: 182 SSLAPFPFVCTLGC 141
+S APFPF L C
Sbjct: 378 ASRAPFPFFSLLAC 419
>gb|CL471314.1|CL471314 SAIL_157_H07.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_157_H07.v1, DNA sequence
Length = 927
Score = 30.9 bits (61), Expect(2) = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1 / +1
Query: 367 RQCAEIWRWREAGRRPWMERDSARADAAYMRRAWPA 474
RQ A++ +R+ G+RP + + D + R WPA
Sbjct: 67 RQ*ADLKPYRDGGKRPPQKAEGPMGDYPCLPRPWPA 174
Score = 22.1 bits (42), Expect(2) = 9.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / +1
Query: 638 VVDAWLPPRRRALG 679
V AW P RRALG
Sbjct: 676 VTTAWGGPSRRALG 717
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,017,733,670
Number of Sequences: 1013581
Number of extensions: 10747742
Number of successful extensions: 84074
Number of sequences better than 10.0: 97
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 49243950800
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)