TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 121 1e-035
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 121 1e-035
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 121 1e-035
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 111 2e-035
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 60 4e-032
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 60 5e-032
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 61 5e-032
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 64 3e-029
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 116 5e-029
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 116 5e-029
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 116 5e-029
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 116 5e-029
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 116 5e-029
emb|AX589887.1| Sequence 69 from Patent WO02081695 116 5e-029
emb|AX652050.1| Sequence 948 from Patent WO03000898 116 5e-029
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 116 5e-029
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 109 1e-027
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 108 3e-027
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 108 3e-027
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 108 3e-027
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 108 3e-027
gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II s... 64 3e-025
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 108 2e-022
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 121 bits (258), Expect(3) = 1e-035
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVH DLSG A GA+AKPGQADQLR+AG ++V Y R AC + G +I FR+DAG+N Y++
Sbjct: 426 EPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYIS 605
Query: 222 MAIEYESGDGDLRAXELKQSGAA 290
+EYE+GDGDL E++ +G +
Sbjct: 606 FVVEYENGDGDLSNVEIQPAGGS 674
Score = 46.4 bits (95), Expect(3) = 1e-035
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S +V+VA NVIPA W+P +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 22.6 bits (43), Expect(3) = 1e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 276 QSGAAAWAPMQRSWGAVWQYKSGS 347
Q ++ MQ AVW+ SGS
Sbjct: 657 QPAGGSFISMQEMRSAVWKVNSGS 728
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 121 bits (258), Expect(3) = 1e-035
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVH DLSG A GA+AKPGQADQLR+AG ++V Y R AC + G +I FR+DAG+N Y++
Sbjct: 426 EPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYIS 605
Query: 222 MAIEYESGDGDLRAXELKQSGAA 290
+EYE+GDGDL E++ +G +
Sbjct: 606 FVVEYENGDGDLSNVEIQPAGGS 674
Score = 46.4 bits (95), Expect(3) = 1e-035
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S +V+VA NVIPA W+P +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 22.6 bits (43), Expect(3) = 1e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 276 QSGAAAWAPMQRSWGAVWQYKSGS 347
Q ++ MQ AVW+ SGS
Sbjct: 657 QPAGGSFISMQEMRSAVWKVNSGS 728
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 121 bits (258), Expect(3) = 1e-035
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
EPVH DLSG A GA+AKPGQADQLR+AG ++V Y R AC + G +I FR+DAG+N Y++
Sbjct: 395 EPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYIS 574
Query: 222 MAIEYESGDGDLRAXELKQSGAA 290
+EYE+GDGDL E++ +G +
Sbjct: 575 FVVEYENGDGDLSNVEIQPAGGS 643
Score = 46.4 bits (95), Expect(3) = 1e-035
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S +V+VA NVIPA W+P +YRS+VNF
Sbjct: 740 SHKVIVAYNVIPANWKPDESYRSIVNF 820
Score = 22.6 bits (43), Expect(3) = 1e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +2
Query: 276 QSGAAAWAPMQRSWGAVWQYKSGS 347
Q ++ MQ AVW+ SGS
Sbjct: 626 QPAGGSFISMQEMRSAVWKVNSGS 697
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 111 bits (236), Expect(3) = 2e-035
Identities = 46/80 (57%), Positives = 57/80 (71%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E VHFDLSGTAFGAMA GQ QLRN G LQ+ Y +V CN+ G + F+VD GSNAN A
Sbjct: 388 ESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFA 567
Query: 222 MAIEYESGDGDLRAXELKQS 281
+ + Y +GDG++ ELKQ+
Sbjct: 568 VLVAYVNGDGEIGRIELKQA 627
Score = 50.1 bits (103), Expect(3) = 2e-035
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VASNVIPA WQPG Y+S VNF
Sbjct: 739 SGKTVVASNVIPANWQPGAIYKSNVNF 819
Score = 28.6 bits (56), Expect(3) = 2e-035
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 294 WAPMQRSWGAVWQ 332
W M +SWGAVW+
Sbjct: 643 WLSMSQSWGAVWK 681
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 59.7 bits (124), Expect(4) = 4e-032
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQY 143
E VHFDLSGTAFGAMA GQ QLRN G LQ+ Y
Sbjct: 8669162 ESVHFDLSGTAFGAMAISGQDSQLRNVGELQILY 8669263
Score = 57.0 bits (118), Expect(4) = 4e-032
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +2
Query: 147 RVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
RV CN+ G + F+VD GSNAN A+ + Y +GDG++ ELKQ+
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 8669518
Score = 50.1 bits (103), Expect(4) = 4e-032
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VASNVIPA WQPG Y+S VNF
Sbjct: 8669630 SGKTVVASNVIPANWQPGAIYKSNVNF 8669710
Score = 28.6 bits (56), Expect(4) = 4e-032
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 294 WAPMQRSWGAVWQ 332
W M +SWGAVW+
Sbjct: 8669534 WLSMSQSWGAVWK 8669572
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 59.7 bits (124), Expect(4) = 5e-032
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +3 / +1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQY 143
E VHFDLSGTAFGAMA GQ QLRN G LQ+ Y
Sbjct: 106918 ESVHFDLSGTAFGAMAISGQDSQLRNVGELQILY 107019
Score = 57.0 bits (118), Expect(4) = 5e-032
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +1
Query: 147 RVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
RV CN+ G + F+VD GSNAN A+ + Y +GDG++ ELKQ+
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 107274
Score = 50.1 bits (103), Expect(4) = 5e-032
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VASNVIPA WQPG Y+S VNF
Sbjct: 107386 SGKTVVASNVIPANWQPGAIYKSNVNF 107466
Score = 28.6 bits (56), Expect(4) = 5e-032
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 294 WAPMQRSWGAVWQ 332
W M +SWGAVW+
Sbjct: 107290 WLSMSQSWGAVWK 107328
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 60.6 bits (126), Expect(3) = 4e-022
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIR 149
EP HFDLSG A GA+A+PGQ D+LR+AG L+V Y R
Sbjct: 27548 EPAHFDLSGKAMGALARPGQGDRLRSAGVLRVYYRR 27655
Score = 59.7 bits (124), Expect(4) = 5e-032
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQY 143
E VHFDLSGTAFGAMA GQ QLRN G LQ+ Y
Sbjct: 25365 ESVHFDLSGTAFGAMAISGQDSQLRNVGELQILY 25466
Score = 57.0 bits (118), Expect(4) = 5e-032
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +3
Query: 147 RVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
RV CN+ G + F+VD GSNAN A+ + Y +GDG++ ELKQ+
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 25721
Score = 53.3 bits (110), Expect(3) = 4e-022
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +3 / +3
Query: 144 IRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELK 275
I V C + +IAFR+D G+N Y++ +EYE+GDGDL E++
Sbjct: 27858 ISVECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYIEIQ 27989
Score = 50.1 bits (103), Expect(4) = 5e-032
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VASNVIPA WQPG Y+S VNF
Sbjct: 25833 SGKTVVASNVIPANWQPGAIYKSNVNF 25913
Score = 47.3 bits (97), Expect(3) = 4e-022
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S +V++A NVIPA W+P TYRSVVNF
Sbjct: 28101 SHKVVLAYNVIPANWKPNETYRSVVNF 28181
Score = 28.6 bits (56), Expect(4) = 5e-032
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 294 WAPMQRSWGAVWQ 332
W M +SWGAVW+
Sbjct: 25737 WLSMSQSWGAVWK 25775
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 63.8 bits (133), Expect(4) = 3e-029
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIR 149
EP HFDLSG A GA+A+PGQ D+LR+AG L+V YIR
Sbjct: 1862 EPAHFDLSGKAMGALARPGQGDRLRSAGVLRVYYIR 1969
Score = 56.5 bits (117), Expect(4) = 3e-029
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3 / +1
Query: 144 IRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSG 284
I V C + +IAFR+D G+N Y++ +EYE+GDGDL E++ +G
Sbjct: 2173 ISVECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEIQPAG 2313
Score = 47.8 bits (98), Expect(4) = 3e-029
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3 / +1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S V+VA NVIPA W+P TYRSVVNF
Sbjct: 2416 SHNVVVAYNVIPANWKPNETYRSVVNF 2496
Score = 25.8 bits (50), Expect(4) = 3e-029
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3 / +1
Query: 276 QSGAAAWAPMQRSWGAVWQYKSGS 347
Q + PMQ AVW+ SGS
Sbjct: 2302 QPAGGTFIPMQEMRSAVWKVNSGS 2373
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 776 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 865
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 776 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 865
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 626
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 627 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 725
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 774 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 863
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 530
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 531 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 629
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 678 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 767
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA PG +RN G L + Y R AC + G +IAF V+AGS +L++ I
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
EYE G+GD+ + ++Q+G+ W M+ WGA W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 34.1 bits (68), Expect(2) = 5e-029
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + + L A++VIP+ W P TY S +NF
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 109 bits (233), Expect(2) = 1e-027
Identities = 42/93 (45%), Positives = 60/93 (64%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L+M +
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSMLV 628
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +G+ L A++V+P W P TY S +NF
Sbjct: 776 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 865
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 108 bits (230), Expect(2) = 3e-027
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L++ +
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 35.9 bits (72), Expect(2) = 3e-027
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +G+ L A++V+P W P TY S +NF
Sbjct: 787 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 876
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 108 bits (230), Expect(2) = 3e-027
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +3 / +3
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L++ +
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 644
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 645 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 743
Score = 35.9 bits (72), Expect(2) = 3e-027
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +G+ L A++V+P W P TY S +NF
Sbjct: 792 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 881
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 108 bits (230), Expect(2) = 3e-027
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L++ +
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 35.9 bits (72), Expect(2) = 3e-027
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +G+ L A++V+P W P TY S +NF
Sbjct: 787 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 876
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 108 bits (230), Expect(2) = 3e-027
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L++ +
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 543
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 544 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 642
Score = 35.9 bits (72), Expect(2) = 3e-027
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +G+ L A++V+P W P TY S +NF
Sbjct: 691 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 780
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
sequence. Sequence from clones T13E15, T14P1
Length = 87885
Score = 64.3 bits (134), Expect(3) = 3e-025
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIR 149
EPVH DLSG A GA+AKPGQADQLR+AG ++V Y R
Sbjct: 66075 EPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKR 66182
Score = 61.1 bits (127), Expect(3) = 3e-025
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +3 / +2
Query: 144 IRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSGAA 290
I AC + G +I FR+DAG+N Y++ +EYE+GDGDL E++ +G +
Sbjct: 66539 ISAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGS 66685
Score = 46.4 bits (95), Expect(3) = 3e-025
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
S +V+VA NVIPA W+P +YRS+VNF
Sbjct: 66782 SHKVIVAYNVIPANWKPDESYRSIVNF 66862
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 108 bits (230), Expect = 2e-022
Identities = 41/93 (44%), Positives = 60/93 (64%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG FG +A G++ LRN G + V Y R AC + G +IAF V+ GS +L++ +
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 628
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E G+GD+ + ++Q+GA W M+ WGA W
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,175,649,815
Number of Sequences: 1013581
Number of extensions: 14073879
Number of successful extensions: 128504
Number of sequences better than 1.0e-020: 24
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 43088456950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)