TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748516.2.1
(1155 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 87 7e-046
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 85 1e-038
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 85 1e-038
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 85 1e-038
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 98 8e-033
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 98 8e-033
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 98 8e-033
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 98 8e-033
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 98 8e-033
emb|AX589887.1| Sequence 69 from Patent WO02081695 98 8e-033
emb|AX652050.1| Sequence 948 from Patent WO03000898 98 8e-033
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 98 8e-033
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 92 3e-032
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 92 3e-032
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 92 3e-032
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 92 3e-032
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 92 3e-032
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 46 2e-030
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 50 3e-029
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 50 7e-029
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 50 2e-027
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 92 4e-027
ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS ... 51 3e-023
gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II s... 47 8e-023
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 87.2 bits (184), Expect(5) = 7e-046
Identities = 34/77 (44%), Positives = 54/77 (70%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSGTAFG+MA G + +LR+ G + + +++V CN+ G T+TF+V GSN AVL+
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLV 576
Query: 478 EHENKDGDVVQADIMQS 428
+ N DG++ + ++ Q+
Sbjct: 577 AYVNGDGEIGRIELKQA 627
Score = 55.1 bits (114), Expect(5) = 7e-046
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = -3 / +1
Query: 868 DNGGACGFKGTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 743
D G Q PFS M S G +FK GKGCG+CYQ++C
Sbjct: 190 DGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKC 315
Score = 50.1 bits (103), Expect(5) = 7e-046
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3 / +1
Query: 427 NSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITN 326
+S W M +SWG++W++D + PLR P S+R+T+
Sbjct: 631 DSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTS 732
Score = 37.7 bits (76), Expect(5) = 7e-046
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3 / +1
Query: 325 ESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
ESG+ +VA NVIPAN+ P Y+S V +*
Sbjct: 736 ESGKTVVASNVIPANWQPGAIYKSNVNF* 822
Score = 30.9 bits (61), Expect(5) = 7e-046
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / +1
Query: 928 SGWLPAKATWYGAPTGAG 875
S W A +TWYG PTG G
Sbjct: 133 SDWSIAGSTWYGNPTGYG 186
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 84.9 bits (179), Expect(5) = 1e-038
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
H DLSG A G++A G D+LR AG+I + ++R C + G I FR+ G+NP Y++ ++
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 614
Query: 478 EHENKDGDVVQADI 437
E+EN DGD+ +I
Sbjct: 615 EYENGDGDLSNVEI 656
Score = 45.5 bits (93), Expect(5) = 1e-038
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P +M S G +F +GKGCG+CYQ+ C+
Sbjct: 264 PLYAMVSAGGPSLFNNGKGCGTCYQVVCI 350
Score = 40.0 bits (81), Expect(5) = 1e-038
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 331 TNESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
+ ES + +VA NVIPAN+ PD YRS V +*
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF* 854
Score = 37.3 bits (75), Expect(5) = 1e-038
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3 / +3
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESGRQLV 305
+Q G + M E ++W+++ LRGPF++R+T+ +++
Sbjct: 654 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVI 785
Score = 28.1 bits (55), Expect(5) = 1e-038
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 730 HPACSGVAQTVIITD 686
HPACSG TV ITD
Sbjct: 354 HPACSGSPITVTITD 398
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 84.9 bits (179), Expect(5) = 1e-038
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
H DLSG A G++A G D+LR AG+I + ++R C + G I FR+ G+NP Y++ ++
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 614
Query: 478 EHENKDGDVVQADI 437
E+EN DGD+ +I
Sbjct: 615 EYENGDGDLSNVEI 656
Score = 45.5 bits (93), Expect(5) = 1e-038
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P +M S G +F +GKGCG+CYQ+ C+
Sbjct: 264 PLYAMVSAGGPSLFNNGKGCGTCYQVVCI 350
Score = 40.0 bits (81), Expect(5) = 1e-038
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 331 TNESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
+ ES + +VA NVIPAN+ PD YRS V +*
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF* 854
Score = 37.3 bits (75), Expect(5) = 1e-038
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3 / +3
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESGRQLV 305
+Q G + M E ++W+++ LRGPF++R+T+ +++
Sbjct: 654 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVI 785
Score = 28.1 bits (55), Expect(5) = 1e-038
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 730 HPACSGVAQTVIITD 686
HPACSG TV ITD
Sbjct: 354 HPACSGSPITVTITD 398
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 84.9 bits (179), Expect(5) = 1e-038
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
H DLSG A G++A G D+LR AG+I + ++R C + G I FR+ G+NP Y++ ++
Sbjct: 404 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVV 583
Query: 478 EHENKDGDVVQADI 437
E+EN DGD+ +I
Sbjct: 584 EYENGDGDLSNVEI 625
Score = 45.5 bits (93), Expect(5) = 1e-038
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P +M S G +F +GKGCG+CYQ+ C+
Sbjct: 233 PLYAMVSAGGPSLFNNGKGCGTCYQVVCI 319
Score = 40.0 bits (81), Expect(5) = 1e-038
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3 / +2
Query: 331 TNESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
+ ES + +VA NVIPAN+ PD YRS V +*
Sbjct: 731 SGESHKVIVAYNVIPANWKPDESYRSIVNF* 823
Score = 37.3 bits (75), Expect(5) = 1e-038
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3 / +2
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESGRQLV 305
+Q G + M E ++W+++ LRGPF++R+T+ +++
Sbjct: 623 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVI 754
Score = 28.1 bits (55), Expect(5) = 1e-038
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / +2
Query: 730 HPACSGVAQTVIITD 686
HPACSG TV ITD
Sbjct: 323 HPACSGSPITVTITD 367
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 733
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 275 PFKARVGAVSPILFKGGEGCGACYKVRCL 361
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +2
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 182 WLPATATWYGSAEGDG 229
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +2
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 743 PLKGPFSVKLTTLSNNKTLS 802
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 733
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 275 PFKARVGAVSPILFKGGEGCGACYKVRCL 361
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +2
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 182 WLPATATWYGSAEGDG 229
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +2
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 743 PLKGPFSVKLTTLSNNKTLS 802
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 626
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 627 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 731
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 273 PFKARVGAVSPILFKGGEGCGACYKVRCL 359
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +3
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 180 WLPATATWYGSAEGDG 227
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 741 PLKGPFSVKLTTLSNNKTLS 800
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 530
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 531 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 635
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 177 PFKARVGAVSPILFKGGEGCGACYKVRCL 263
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +3
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 84 WLPATATWYGSAEGDG 131
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 645 PLKGPFSVKLTTLSNNKTLS 704
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 669
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCL 297
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +1
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 118 WLPATATWYGSAEGDG 165
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 679 PLKGPFSVKLTTLSNNKTLS 738
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 669
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCL 297
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +1
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 118 WLPATATWYGSAEGDG 165
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 679 PLKGPFSVKLTTLSNNKTLS 738
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 669
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCL 297
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +1
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 118 WLPATATWYGSAEGDG 165
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 679 PLKGPFSVKLTTLSNNKTLS 738
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 97.7 bits (207), Expect(4) = 8e-033
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG AFG MA G N +R+ G++++ +RR C + G I F V GS +L++LI
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E+E+ +GD+ I Q+ S W M WG+ W I
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI 669
Score = 42.3 bits (86), Expect(4) = 8e-033
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
PF + + +FK G+GCG+CY++RCL
Sbjct: 211 PFKARVGAVSPILFKGGEGCGACYKVRCL 297
Score = 33.6 bits (67), Expect(4) = 8e-033
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +1
Query: 922 WLPAKATWYGAPTGAG 875
WLPA ATWYG+ G G
Sbjct: 118 WLPATATWYGSAEGDG 165
Score = 25.4 bits (49), Expect(4) = 8e-033
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNESGRQLVA 302
PL+GPFS+++T S + ++
Sbjct: 679 PLKGPFSVKLTTLSNNKTLS 738
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 91.8 bits (194), Expect(4) = 3e-032
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 744
Score = 42.3 bits (86), Expect(4) = 3e-032
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P + N +FK+G+GCG+CY++RCL
Sbjct: 295 PLHARVGAVNPILFKNGEGCGACYKVRCL 381
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +1
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 193 NSHWLPAVATWYGSPNGDG 249
Score = 24.4 bits (47), Expect(4) = 3e-032
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 754 PLKGPFSIKLTTLS 795
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 91.8 bits (194), Expect(4) = 3e-032
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 644
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 645 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 749
Score = 42.3 bits (86), Expect(4) = 3e-032
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P + N +FK+G+GCG+CY++RCL
Sbjct: 300 PLHARVGAVNPILFKNGEGCGACYKVRCL 386
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +3
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 198 NSHWLPAVATWYGSPNGDG 254
Score = 24.4 bits (47), Expect(4) = 3e-032
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +3
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 759 PLKGPFSIKLTTLS 800
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 91.8 bits (194), Expect(4) = 3e-032
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 744
Score = 42.3 bits (86), Expect(4) = 3e-032
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P + N +FK+G+GCG+CY++RCL
Sbjct: 295 PLHARVGAVNPILFKNGEGCGACYKVRCL 381
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +1
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 193 NSHWLPAVATWYGSPNGDG 249
Score = 24.4 bits (47), Expect(4) = 3e-032
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 754 PLKGPFSIKLTTLS 795
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 91.8 bits (194), Expect(4) = 3e-032
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 543
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 544 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 648
Score = 42.3 bits (86), Expect(4) = 3e-032
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P + N +FK+G+GCG+CY++RCL
Sbjct: 199 PLHARVGAVNPILFKNGEGCGACYKVRCL 285
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +1
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 97 NSHWLPAVATWYGSPNGDG 153
Score = 24.4 bits (47), Expect(4) = 3e-032
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 658 PLKGPFSIKLTTLS 699
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 91.8 bits (194), Expect(4) = 3e-032
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 628
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 733
Score = 42.3 bits (86), Expect(4) = 3e-032
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIRCL 740
P + N +FK+G+GCG+CY++RCL
Sbjct: 284 PLHARVGAVNPILFKNGEGCGACYKVRCL 370
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +2
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 182 NSHWLPAVATWYGSPNGDG 238
Score = 24.4 bits (47), Expect(4) = 3e-032
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 743 PLKGPFSIKLTTLS 784
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 45.5 bits (93), Expect(7) = 2e-030
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -3 / +1
Query: 559 VPCNFPGLTITFRVQHGSNPMYLAVLIEHENKDGDVVQADI 437
V C + I FR+ G+NP Y++ ++E+EN DGD+ +I
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEI 2301
Score = 41.8 bits (85), Expect(7) = 2e-030
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3 / +1
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESGRQLV 305
+Q G + PM E ++W+++ PL GPF++R+T+ +V
Sbjct: 2299 IQPAGGTFIPMQEMRSAVWKVNSGSPLTGPFNIRLTSAESHNVV 2430
Score = 40.9 bits (83), Expect(7) = 2e-030
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRR 560
HFDLSG A G++A G D+LR AG++ + + R
Sbjct: 1871 HFDLSGKAMGALARPGQGDRLRSAGVLRVYYIR 1969
Score = 36.3 bits (73), Expect(7) = 2e-030
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQI 749
P M S G +F +G GCG+C+Q+
Sbjct: 1322 PLYGMVSAGGPSVFNNGIGCGTCFQV 1399
Score = 34.5 bits (69), Expect(7) = 2e-030
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 325 ESGRQLVAKNVIPANYIPDVDYRSFVQY 242
ES +VA NVIPAN+ P+ YRS V +
Sbjct: 2413 ESHNVVVAYNVIPANWKPNETYRSVVNF 2496
Score = 32.7 bits (65), Expect(7) = 2e-030
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / +3
Query: 928 SGWLPAKATWYGAPTGAG 875
+GW A TWYG P GAG
Sbjct: 1107 AGWGTAGVTWYGEPLGAG 1160
Score = 24.9 bits (48), Expect(7) = 2e-030
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3 / +2
Query: 742 LKSNHPACSGVAQTVIITD 686
L + HPACS TV ITD
Sbjct: 1778 LCNGHPACSRRPITVTITD 1834
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 50.1 bits (103), Expect(6) = 3e-029
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3 / +3
Query: 427 NSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITN 326
+S W M +SWG++W++D + PLR P S+R+T+
Sbjct: 25725 DSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTS 25826
Score = 49.6 bits (102), Expect(6) = 3e-029
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -3 / +3
Query: 562 RVPCNFPGLTITFRVQHGSNPMYLAVLIEHENKDGDVVQADIMQS 428
RV CN+ G T+TF+V GSN AVL+ + N DG++ + ++ Q+
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 25721
Score = 49.6 bits (102), Expect(6) = 3e-029
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = -3 / +3
Query: 832 QYPFSSMTSCGNEPIFKDGKGCGSCYQI 749
Q PFS M S G +FK GKGCG+CYQ+
Sbjct: 25119 QPPFSKMVSAGGPSLFKSGKGCGACYQV 25202
Score = 42.8 bits (87), Expect(6) = 3e-029
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRR 560
HFDLSGTAFG+MA G + +LR+ G + + +++
Sbjct: 25374 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 25472
Score = 37.7 bits (76), Expect(6) = 3e-029
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3 / +3
Query: 325 ESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
ESG+ +VA NVIPAN+ P Y+S V +*
Sbjct: 25830 ESGKTVVASNVIPANWQPGAIYKSNVNF* 25916
Score = 30.9 bits (61), Expect(6) = 3e-029
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / +3
Query: 928 SGWLPAKATWYGAPTGAG 875
S W A +TWYG PTG G
Sbjct: 24915 SDWSIAGSTWYGNPTGYG 24968
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 50.1 bits (103), Expect(6) = 7e-029
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3 / +1
Query: 427 NSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITN 326
+S W M +SWG++W++D + PLR P S+R+T+
Sbjct: 107278 DSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTS 107379
Score = 49.6 bits (102), Expect(6) = 7e-029
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -3 / +1
Query: 562 RVPCNFPGLTITFRVQHGSNPMYLAVLIEHENKDGDVVQADIMQS 428
RV CN+ G T+TF+V GSN AVL+ + N DG++ + ++ Q+
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 107274
Score = 49.6 bits (102), Expect(6) = 7e-029
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = -3 / +1
Query: 832 QYPFSSMTSCGNEPIFKDGKGCGSCYQI 749
Q PFS M S G +FK GKGCG+CYQ+
Sbjct: 106672 QPPFSKMVSAGGPSLFKSGKGCGACYQV 106755
Score = 42.8 bits (87), Expect(6) = 7e-029
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRR 560
HFDLSGTAFG+MA G + +LR+ G + + +++
Sbjct: 106927 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 107025
Score = 37.7 bits (76), Expect(6) = 7e-029
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3 / +1
Query: 325 ESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
ESG+ +VA NVIPAN+ P Y+S V +*
Sbjct: 107383 ESGKTVVASNVIPANWQPGAIYKSNVNF* 107469
Score = 30.9 bits (61), Expect(6) = 7e-029
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / +1
Query: 928 SGWLPAKATWYGAPTGAG 875
S W A +TWYG PTG G
Sbjct: 106468 SDWSIAGSTWYGNPTGYG 106521
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 50.1 bits (103), Expect(4) = 2e-027
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3 / +2
Query: 427 NSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITN 326
+S W M +SWG++W++D + PLR P S+R+T+
Sbjct: 8669522 DSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTS 8669623
Score = 49.6 bits (102), Expect(4) = 2e-027
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -3 / +2
Query: 562 RVPCNFPGLTITFRVQHGSNPMYLAVLIEHENKDGDVVQADIMQS 428
RV CN+ G T+TF+V GSN AVL+ + N DG++ + ++ Q+
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQA 8669518
Score = 42.8 bits (87), Expect(4) = 2e-027
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRR 560
HFDLSGTAFG+MA G + +LR+ G + + +++
Sbjct: 8669171 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 8669269
Score = 37.7 bits (76), Expect(4) = 2e-027
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3 / +2
Query: 325 ESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
ESG+ +VA NVIPAN+ P Y+S V +*
Sbjct: 8669627 ESGKTVVASNVIPANWQPGAIYKSNVNF* 8669713
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 91.8 bits (194), Expect(4) = 4e-027
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -3 / +2
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRRVPCNFPGLTITFRVQHGSNPMYLAVLI 479
HFDLSG FG +A G + LR+ G+I + +RR C + G I F V GS +L++L+
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSMLV 628
Query: 478 EHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRI 374
E E+ +GD+ I Q+ + W M WG+ W I
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCI 733
Score = 38.6 bits (78), Expect(4) = 4e-027
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / +2
Query: 931 SSGWLPAKATWYGAPTGAG 875
+S WLPA ATWYG+P G G
Sbjct: 182 NSHWLPAVATWYGSPNGDG 238
Score = 24.4 bits (47), Expect(4) = 4e-027
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 361 PLRGPFSMRITNES 320
PL+GPFS+++T S
Sbjct: 743 PLKGPFSIKLTTLS 784
Score = 24.4 bits (47), Expect(4) = 4e-027
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3 / +3
Query: 826 PFSSMTSCGNEPIFKDGKGCG 764
P + N +FK+G+GCG
Sbjct: 285 PLHARVGAVNPILFKNGEGCG 347
>ref|NM_115921.1| Arabidopsis thaliana ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)
AT3G60570 (ATEXPB5) mRNA, complete cds
Length = 759
Score = 51.5 bits (106), Expect(5) = 3e-023
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -3 / +1
Query: 832 QYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 743
++P+ M S G +FKDGKGCG+CY+++C
Sbjct: 187 KHPYRCMVSAGGPSLFKDGKGCGACYRLKC 276
Score = 42.8 bits (87), Expect(5) = 3e-023
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3 / +1
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITN 326
+Q G + M E ++WR+ P PL+GPF++R+T+
Sbjct: 538 VQPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTS 648
Score = 39.1 bits (79), Expect(5) = 3e-023
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -3 / +1
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAG 584
HFDLSG AFG++A G D+LR+ G
Sbjct: 355 HFDLSGKAFGALAKRGKGDQLRNLG 429
Score = 26.7 bits (52), Expect(5) = 3e-023
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3 / +1
Query: 532 ITFRVQHGSNPMYLAVLIEHENKDGD 455
I V G+NP Y++ ++ N DG+
Sbjct: 445 IAIHVDAGANPYYMSFAVKFANGDGN 522
Score = 22.6 bits (43), Expect(5) = 3e-023
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +1
Query: 877 GPVDNGGACGF 845
GP GGACG+
Sbjct: 139 GPGTTGGACGY 171
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
sequence. Sequence from clones T13E15, T14P1
Length = 87885
Score = 47.3 bits (97), Expect(6) = 8e-023
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -3 / +2
Query: 553 CNFPGLTITFRVQHGSNPMYLAVLIEHENKDGDVVQADI 437
C + G I FR+ G+NP Y++ ++E+EN DGD+ +I
Sbjct: 66551 CLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEI 66667
Score = 44.1 bits (90), Expect(6) = 8e-023
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3 / +2
Query: 826 PFSSMTSCGNEPIFKDGKGCGSCYQIR 746
P +M S G +F +GKGCG+CYQ+R
Sbjct: 65510 PLYAMVSAGGPSLFNNGKGCGTCYQVR 65590
Score = 40.9 bits (83), Expect(6) = 8e-023
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +3
Query: 658 HFDLSGTAFGSMASWGLNDKLRHAGIIDMQFRR 560
H DLSG A G++A G D+LR AG+I + ++R
Sbjct: 66084 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKR 66182
Score = 40.0 bits (81), Expect(6) = 8e-023
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3 / +2
Query: 331 TNESGRQLVAKNVIPANYIPDVDYRSFVQY* 239
+ ES + +VA NVIPAN+ PD YRS V +*
Sbjct: 66773 SGESHKVIVAYNVIPANWKPDESYRSIVNF* 66865
Score = 37.3 bits (75), Expect(6) = 8e-023
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3 / +2
Query: 436 MQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESGRQLV 305
+Q G + M E ++W+++ LRGPF++R+T+ +++
Sbjct: 66665 IQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVI 66796
Score = 28.1 bits (55), Expect(6) = 8e-023
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 730 HPACSGVAQTVIITD 686
HPACSG TV ITD
Sbjct: 66003 HPACSGSPITVTITD 66047
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,691,595,751
Number of Sequences: 1013581
Number of extensions: 22028892
Number of successful extensions: 178145
Number of sequences better than 1.0e-020: 25
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 80182418571
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)