TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 112 9e-024
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 112 9e-024
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 112 9e-024
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 112 9e-024
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 112 9e-024
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 112 9e-024
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 112 9e-024
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 112 9e-024
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 112 9e-024
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 112 9e-024
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 112 9e-024
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 111 2e-023
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 111 2e-023
emb|AX505737.1| Sequence 432 from Patent WO0216655 111 2e-023
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 111 2e-023
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 108 1e-022
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 103 5e-021
gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green ... 103 5e-021
gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds 103 5e-021
gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BA... 103 5e-021
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 103 5e-021
ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1... 103 5e-021
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 103 5e-021
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 531 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 364
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 542 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 375
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 542 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 375
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 216 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 383
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2860 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3027
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2132 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2299
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2734 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2901
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2610 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 2777
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 139 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 306
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2883 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3050
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 112 bits (239), Expect = 9e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 2889 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 3056
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 111 bits (236), Expect = 2e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 195 GTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 362
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 111 bits (236), Expect = 2e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 2709 GTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 2876
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 111 bits (236), Expect = 2e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 2581 GTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 2748
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 111 bits (236), Expect = 2e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 2709 GTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 2876
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 108 bits (230), Expect = 1e-022
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICH TEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT NLCY
Sbjct: 348 GTVVDSKICHRTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCY 181
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 103 bits (219), Expect = 5e-021
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYN 168
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT N
Sbjct: 235 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNN 393
>gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ053e11F 3', mRNA sequence
Length = 551
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 418 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 251
>gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds
Length = 3161
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 2743 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 2910
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
sequence
Length = 107214
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 45266 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 45099
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 10344141 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 10343974
>ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1G69440 (AGO7) mRNA,
complete cds
Length = 3163
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 2743 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 2910
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 103 bits (219), Expect = 5e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYH+L D+N+FT+D LQ L YNLCY
Sbjct: 26105608 GTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCY 26105441
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,195,038,107
Number of Sequences: 1013581
Number of extensions: 16640297
Number of successful extensions: 235216
Number of sequences better than 1.0e-020: 25
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 29668000200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)