TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green ... 196 3e-049
gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 196 3e-049
emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA ... 196 3e-049
ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G1... 196 3e-049
ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT... 196 4e-049
gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 194 2e-048
gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid... 192 6e-048
gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots ... 192 6e-048
gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green ... 192 6e-048
gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R2... 192 6e-048
gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complet... 192 6e-048
ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G6... 192 6e-048
emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cD... 192 8e-048
gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green ... 191 1e-047
emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cD... 190 2e-047
gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complet... 190 3e-047
gb|AY140001.1| Arabidopsis thaliana stress-induced protein ... 132 2e-044
ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G1... 132 2e-044
gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid... 176 5e-043
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 88 9e-041
emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosom... 88 1e-040
emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome ... 88 1e-040
emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4... 88 1e-040
dbj|BD248411.1| Gene participating in tolerance against env... 88 1e-040
gb|AV539169.1|AV539169 AV539169 Arabidopsis thaliana roots ... 163 3e-039
gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green ... 162 7e-039
gb|BP656001.1|BP656001 BP656001 RAFL19 Arabidopsis thaliana... 149 2e-037
gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana... 112 7e-034
gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis tha... 75 1e-031
gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green ... 137 4e-031
gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana... 84 7e-031
gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cD... 134 2e-030
gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis tha... 73 2e-030
gb|BP663373.1|BP663373 BP663373 RAFL21 Arabidopsis thaliana... 127 3e-028
gb|BP668064.1|BP668064 BP668064 RAFL21 Arabidopsis thaliana... 123 4e-027
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 75 9e-026
gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana ... 115 8e-025
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 73 5e-024
gb|AI100596.1|AI100596 34971 Lambda-PRL2 Arabidopsis thalia... 104 2e-021
>gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ174d01F 3', mRNA sequence
Length = 553
Score = 196 bits (423), Expect = 3e-049
Identities = 81/104 (77%), Positives = 94/104 (90%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 471 METYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 292
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 291 PVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 160
>gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1943
Score = 196 bits (423), Expect = 3e-049
Identities = 81/104 (77%), Positives = 94/104 (90%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1441 METYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1620
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 1621 PVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 1752
>emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA for stil-like (stil gene)
Length = 720
Score = 196 bits (423), Expect = 3e-049
Identities = 81/104 (77%), Positives = 94/104 (90%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 191 METYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 370
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 371 PVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 502
>ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G12270 mRNA, complete cds
Length = 1949
Score = 196 bits (423), Expect = 3e-049
Identities = 81/104 (77%), Positives = 94/104 (90%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1441 METYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1620
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 1621 PVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 1752
>ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.2 mRNA, complete cds
Length = 2006
Score = 196 bits (422), Expect = 4e-049
Identities = 81/103 (78%), Positives = 92/103 (89%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GLKH PKNQE LDGVRRCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+D
Sbjct: 1491 METYQEGLKHDPKNQEFLDGVRRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSD 1670
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 1671 PVMRQVLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 1799
>gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1719
Score = 194 bits (418), Expect = 2e-048
Identities = 80/103 (77%), Positives = 93/103 (90%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1411 METYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1590
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*
Sbjct: 1591 PVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK* 1719
>gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064F 3', mRNA
sequence
Length = 609
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 431 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 252
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 251 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 120
>gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ61b01F 3', mRNA sequence
Length = 643
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 402 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 223
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 222 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 91
>gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ164a03F 3', mRNA sequence
Length = 465
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 431 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 252
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 251 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 120
Score = 76.7 bits (161), Expect(3) = 9e-021
Identities = 34/53 (64%), Positives = 36/53 (67%)
Frame = +3 / +1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
VYFI TIP L SFWI + GF C CAA GFS RS TC + GSVRMF ISG
Sbjct: 121 VYFIWTIPELISFWILFMIIGFCMCFCAAAGFSWRSDSTCLITGSVRMF*ISG 279
Score = 43.7 bits (89), Expect(3) = 9e-021
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +3 / +1
Query: 405 ICSTHLLTPSSNSWFFGXCFRP 470
IC THLLTPS +SW G C RP
Sbjct: 349 ICCTHLLTPSRSSWLLGSCSRP 414
Score = 17.6 bits (32), Expect(3) = 9e-021
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +3 / +1
Query: 75 LWSHKRV 95
+WS+KRV
Sbjct: 64 VWSYKRV 84
>gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R20937) putative TPR-repeat
protein (At1g62740) mRNA, complete cds
Length = 1924
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1473 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1652
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 1653 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 1784
>gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1795
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1478 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1657
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 1658 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 1789
>ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G62740 mRNA, complete cds
Length = 2185
Score = 192 bits (414), Expect = 6e-048
Identities = 78/104 (75%), Positives = 93/104 (89%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1473 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1652
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 1653 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 1784
>emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS69ZC08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1846
Score = 192 bits (413), Expect = 8e-048
Identities = 78/104 (75%), Positives = 92/104 (88%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1455 METYQKGLEHDPNNQELLDGVKRCVQQINKADRGDLTPEELKERQAKGMQDPEIQNILTD 1634
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 1635 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 1766
>gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231a11F 3', mRNA sequence
Length = 452
Score = 191 bits (411), Expect = 1e-047
Identities = 79/101 (78%), Positives = 91/101 (90%)
Frame = -1 / -2
Query: 478 YQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIM 299
YQAGL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTDP+M
Sbjct: 451 YQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTDPVM 272
Query: 298 QQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 271 RQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 149
>emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH85ZA09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1858
Score = 190 bits (410), Expect = 2e-047
Identities = 78/104 (75%), Positives = 92/104 (88%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1467 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGVLTPEELKERQAKGMQDPEIQNILTD 1646
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 1647 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 1778
>gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1716
Score = 190 bits (409), Expect = 3e-047
Identities = 77/103 (74%), Positives = 92/103 (89%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 1408 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 1587
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*
Sbjct: 1588 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK* 1716
>gb|AY140001.1| Arabidopsis thaliana stress-induced protein sti1-like protein
(At4g12400) mRNA, complete cds
Length = 2066
Score = 132 bits (283), Expect(2) = 2e-044
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GLKH PKNQE LDGVRRCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+D
Sbjct: 1494 METYQEGLKHDPKNQEFLDGVRRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSD 1673
Query: 307 PIMQQV 290
P+M+QV
Sbjct: 1674 PVMRQV 1691
Score = 68.4 bits (143), Expect(2) = 2e-044
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / +2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 1763 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 1876
>ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.1 mRNA, complete cds
Length = 2064
Score = 132 bits (283), Expect(2) = 2e-044
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GLKH PKNQE LDGVRRCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+D
Sbjct: 1491 METYQEGLKHDPKNQEFLDGVRRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSD 1670
Query: 307 PIMQQV 290
P+M+QV
Sbjct: 1671 PVMRQV 1688
Score = 68.4 bits (143), Expect(2) = 2e-044
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / +2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 1760 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 1873
>gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064R 5', mRNA
sequence
Length = 513
Score = 176 bits (378), Expect = 5e-043
Identities = 70/95 (73%), Positives = 84/95 (88%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+ETYQ GL+H P NQELLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTD
Sbjct: 229 METYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTD 408
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVS 203
P+M+QVL+DLQENP AAQ H++NP +M KIQKL+S
Sbjct: 409 PVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLIS 513
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 88.1 bits (186), Expect(3) = 9e-041
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = -1 / -3
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
V RCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+DP+M+QV
Sbjct: 3251924 VFRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQV 3251787
Score = 68.4 bits (143), Expect(3) = 9e-041
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / -2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 3251715 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 3251602
Score = 50.1 bits (103), Expect(3) = 9e-041
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GLKH PKNQE LDGVRR
Sbjct: 3252061 METYQEGLKHDPKNQEFLDGVRR 3251993
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
Length = 196107
Score = 88.1 bits (186), Expect(3) = 1e-040
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = -1 / -3
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
V RCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+DP+M+QV
Sbjct: 11314 VFRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQV 11177
Score = 68.4 bits (143), Expect(3) = 1e-040
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / -2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 11105 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 10992
Score = 50.1 bits (103), Expect(3) = 1e-040
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GLKH PKNQE LDGVRR
Sbjct: 11451 METYQEGLKHDPKNQEFLDGVRR 11383
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
Length = 137519
Score = 88.1 bits (186), Expect(3) = 1e-040
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = -1 / -3
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
V RCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+DP+M+QV
Sbjct: 6783 VFRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQV 6646
Score = 68.4 bits (143), Expect(3) = 1e-040
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / -2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 6574 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 6461
Score = 50.1 bits (103), Expect(3) = 1e-040
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GLKH PKNQE LDGVRR
Sbjct: 6920 METYQEGLKHDPKNQEFLDGVRR 6852
>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project)
Length = 85356
Score = 88.1 bits (186), Expect(3) = 1e-040
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = -1 / -3
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
V RCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+DP+M+QV
Sbjct: 73285 VFRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQV 73148
Score = 68.4 bits (143), Expect(3) = 1e-040
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / -2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 73076 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 72963
Score = 50.1 bits (103), Expect(3) = 1e-040
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GLKH PKNQE LDGVRR
Sbjct: 73422 METYQEGLKHDPKNQEFLDGVRR 73354
>dbj|BD248411.1| Gene participating in tolerance against environmental stress
Length = 2640
Score = 88.1 bits (186), Expect(3) = 1e-040
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = -1 / +3
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
V RCVEQI KASRG+L+ EELKERQ KAMQDPE+QNIL+DP+M+QV
Sbjct: 2196 VFRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQV 2333
Score = 68.4 bits (143), Expect(3) = 1e-040
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -1 / +2
Query: 292 VLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
VL D QENP+AAQ H+KNP VM KIQKLVSAGIVQ++*
Sbjct: 2405 VLVDFQENPKAAQEHMKNPMVMNKIQKLVSAGIVQVR* 2518
Score = 50.1 bits (103), Expect(3) = 1e-040
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GLKH PKNQE LDGVRR
Sbjct: 2059 METYQEGLKHDPKNQEFLDGVRR 2127
>gb|AV539169.1|AV539169 AV539169 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ128e03F 3', mRNA sequence
Length = 553
Score = 163 bits (351), Expect = 3e-039
Identities = 66/103 (64%), Positives = 85/103 (82%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
+E YQ GL+H P QE+LDGV+RCV+QI+KA RG+L+ EE+KERQ K QDPE QNILTD
Sbjct: 472 MEAYQKGLEHDPNKQEVLDGVKRCVQQISKARRGDLTPEEVKERQAKGRQDPEGQNILTD 293
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
+M+QVL+D+QE P AAQ H++ P +M KIQ+L+S+GIVQMK*
Sbjct: 292 AVMRQVLSDVQEKPAAAQEHMQKPRIMNKIQELISSGIVQMK* 164
>gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ207b04F 3', mRNA sequence
Length = 414
Score = 162 bits (348), Expect = 7e-039
Identities = 68/88 (77%), Positives = 79/88 (89%)
Frame = -1 / -3
Query: 439 LLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRA 260
LLDGV+RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNIL DP+M+QVL+DLQENP A
Sbjct: 412 LLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILPDPVMRQVLSDLQENPSA 233
Query: 259 AQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
AQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 232 AQKHMQNPMVMNKIQKLISAGIVQMK*T 149
>gb|BP656001.1|BP656001 BP656001 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-24-C22 3',
mRNA sequence
Length = 418
Score = 149 bits (320), Expect(2) = 2e-037
Identities = 60/84 (71%), Positives = 75/84 (89%)
Frame = -1 / -1
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAH 248
V+RCV+QI KA+RG+L+ EELKERQ K +QDPEIQNILTDP+M+Q+L+DLQENP AAQ H
Sbjct: 370 VKRCVQQINKANRGDLTREELKERQGKGIQDPEIQNILTDPVMRQLLSDLQENPAAAQNH 191
Query: 247 LKNPGVMQKIQKLVSAGIVQMK*T 176
++NP +M KIQKL+ +GIVQMK*T
Sbjct: 190 IQNPMIMNKIQKLIRSGIVQMK*T 119
Score = 27.6 bits (54), Expect(2) = 2e-037
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 475 QAGLKHXPKNQELLD 431
Q GL+H P N ELLD
Sbjct: 417 QKGLQHDPNNHELLD 373
>gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-17-C20 3',
mRNA sequence
Length = 377
Score = 112 bits (239), Expect(2) = 7e-034
Identities = 46/63 (73%), Positives = 56/63 (88%)
Frame = -1 / -2
Query: 364 KERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQM 185
K+ + K MQDPEIQNILTDP+M+QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQM
Sbjct: 307 KKDRAKGMQDPEIQNILTDPVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQM 128
Query: 184 K*T 176
K*T
Sbjct: 127 K*T 119
Score = 52.4 bits (108), Expect(2) = 7e-034
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -1 / -1
Query: 433 DGVRRCVEQITKASRGELSEEELKERQ 353
DGV+RCV+QI KA+RG+L+ EELKERQ
Sbjct: 377 DGVKRCVQQINKANRGDLTPEELKERQ 297
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome
I, complete sequence
Length = 118374
Score = 75.3 bits (158), Expect(4) = 1e-031
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -1 / +1
Query: 298 QQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 3781 KQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 3903
Score = 51.9 bits (107), Expect(4) = 1e-031
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITK 398
+ETYQAGL+H P NQELLDGV+R + + T+
Sbjct: 3218 METYQAGLEHDPSNQELLDGVKRYIHRYTE 3307
Score = 45.1 bits (92), Expect(4) = 1e-031
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -1 / +2
Query: 349 KAMQDPEIQNILTDPIMQQV 290
K MQDPEIQNILTDP+M+QV
Sbjct: 3539 KGMQDPEIQNILTDPVMRQV 3598
Score = 44.1 bits (90), Expect(4) = 1e-031
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -1 / +2
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV+QI KA+RG+L+ EELKERQ
Sbjct: 3368 RCVQQINKANRGDLTPEELKERQ 3436
>gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ025f10F 3', mRNA sequence
Length = 469
Score = 137 bits (294), Expect(2) = 4e-031
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = -1 / -2
Query: 427 VRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAH 248
++ CV+QI KA+R +L+ EELK+ Q K MQDPEIQNIL DP+M+QVL+DLQ+NP AAQ H
Sbjct: 432 LKECVQQINKANREDLTPEELKKIQAKVMQDPEIQNILADPVMRQVLSDLQKNPSAAQKH 253
Query: 247 LKNPGVMQKIQKLVSAGIVQMK*T 176
++NP VM KIQKL+SAGIVQMK*T
Sbjct: 252 MQNPMVMIKIQKLISAGIVQMK*T 181
Score = 18.5 bits (34), Expect(2) = 4e-031
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1 / -3
Query: 460 HXPKNQELLD 431
H P Q+LLD
Sbjct: 467 HDPSKQKLLD 438
>gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-26-I19 3',
mRNA sequence
Length = 364
Score = 83.5 bits (176), Expect(2) = 7e-031
Identities = 33/43 (76%), Positives = 39/43 (90%)
Frame = -1 / -1
Query: 421 RCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQ 293
RCV+QI KA+RG+L+ EELKERQ K MQDPEIQNILTDP+M+Q
Sbjct: 364 RCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTDPVMRQ 236
Score = 71.2 bits (149), Expect(2) = 7e-031
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = -1 / -3
Query: 298 QQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
+ VL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 242 ETVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 120
>gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cDNA clone E10E7T7, mRNA sequence
Length = 566
Score = 134 bits (287), Expect = 2e-030
Identities = 55/75 (73%), Positives = 67/75 (89%)
Frame = -1 / -3
Query: 400 KASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQK 221
+ +RG+L+ EELKERQ K MQDPEIQNILTDP+M+QVL+DLQENP AAQ H++NP +M K
Sbjct: 309 RQTRGDLTPEELKERQAKGMQDPEIQNILTDPVMRQVLSDLQENPAAAQKHMQNPMIMNK 130
Query: 220 IQKLVSAGIVQMK*T 176
IQKL+S+GIVQMK*T
Sbjct: 129 IQKLISSGIVQMK*T 85
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
complete sequence
Length = 86801
Score = 73.0 bits (153), Expect(4) = 2e-030
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = -1 / +2
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 46232 QVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 46351
Score = 46.9 bits (96), Expect(4) = 2e-030
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / +1
Query: 355 QNKAMQDPEIQNILTDPIMQQVLTDL 278
Q K MQDPEIQNILTDP+M+QV L
Sbjct: 46024 QAKGMQDPEIQNILTDPVMRQVKNTL 46101
Score = 46.4 bits (95), Expect(4) = 2e-030
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GL+H P NQELLDGV+R
Sbjct: 45693 METYQKGLEHDPNNQELLDGVKR 45761
Score = 44.1 bits (90), Expect(4) = 2e-030
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -1 / +1
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV+QI KA+RG+L+ EELKERQ
Sbjct: 45856 RCVQQINKANRGDLTPEELKERQ 45924
>gb|BP663373.1|BP663373 BP663373 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-47-M11 3',
mRNA sequence
Length = 417
Score = 127 bits (271), Expect = 3e-028
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = -1 / -2
Query: 403 TKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQ 224
T + G L+ EELKERQ KAMQDPE+QNIL+DP+M+QVL D Q+NP+AAQ H+KNP VM
Sbjct: 416 TNPTLGNLTPEELKERQAKAMQDPEVQNILSDPVMRQVLVDFQQNPKAAQDHIKNPMVMH 237
Query: 223 KIQKLVSAGIVQMK* 179
KIQKLVSAGIVQ++*
Sbjct: 236 KIQKLVSAGIVQVR* 192
>gb|BP668064.1|BP668064 BP668064 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-25-N01 3',
mRNA sequence
Length = 417
Score = 123 bits (263), Expect = 4e-027
Identities = 51/69 (73%), Positives = 61/69 (88%)
Frame = -1 / -2
Query: 385 ELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLV 206
+L+ EELKERQ K MQDPE+QNIL+DP+M+QVL D QENP+AAQ H+KNP VM KIQKLV
Sbjct: 416 DLTPEELKERQAKPMQDPEVQNILSDPVMRQVLVDFQENPKAAQEHMKNPMVMNKIQKLV 237
Query: 205 SAGIVQMK* 179
SAGIVQ++*
Sbjct: 236 SAGIVQVR* 210
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 75.3 bits (158), Expect(4) = 9e-026
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -1 / +3
Query: 298 QQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
+QVL+DLQENP AAQ H++NP VM KIQKL+SAGIVQMK*T
Sbjct: 4174278 KQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQMK*T 4174400
Score = 51.9 bits (107), Expect(4) = 9e-026
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITK 398
+ETYQAGL+H P NQELLDGV+R + + T+
Sbjct: 4173715 METYQAGLEHDPSNQELLDGVKRYIHRYTE 4173804
Score = 45.1 bits (92), Expect(4) = 9e-026
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -1 / +1
Query: 349 KAMQDPEIQNILTDPIMQQV 290
K MQDPEIQNILTDP+M+QV
Sbjct: 4174036 KGMQDPEIQNILTDPVMRQV 4174095
Score = 44.1 bits (90), Expect(4) = 9e-026
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -1 / +1
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV+QI KA+RG+L+ EELKERQ
Sbjct: 4173865 RCVQQINKANRGDLTPEELKERQ 4173933
>gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-32-P19 3',
mRNA sequence
Length = 398
Score = 115 bits (246), Expect = 8e-025
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = -1 / -1
Query: 382 LSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVS 203
L+ E K + + MQDPEIQNILTDP+M+QVL+DLQENP AAQ H++NP VM KIQKL+S
Sbjct: 398 LTPEN*KRDRQRGMQDPEIQNILTDPVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLIS 219
Query: 202 AGIVQMK*T 176
AGIVQMK*T
Sbjct: 218 AGIVQMK*T 192
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 73.0 bits (153), Expect(4) = 5e-024
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = -1 / +2
Query: 295 QVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*T 176
QVL+DLQENP AAQ H++NP +M KIQKL+S+GIVQMK*T
Sbjct: 7474580 QVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQMK*T 7474699
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / +1
Query: 355 QNKAMQDPEIQNILTDPIMQQVLTDL 278
Q K MQDPEIQNILTDP+M+QV L
Sbjct: 7474372 QAKGMQDPEIQNILTDPVMRQVKNTL 7474449
Score = 46.4 bits (95), Expect(4) = 5e-024
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
+ETYQ GL+H P NQELLDGV+R
Sbjct: 7474041 METYQKGLEHDPNNQELLDGVKR 7474109
Score = 44.1 bits (90), Expect(4) = 5e-024
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -1 / +1
Query: 421 RCVEQITKASRGELSEEELKERQ 353
RCV+QI KA+RG+L+ EELKERQ
Sbjct: 7474204 RCVQQINKANRGDLTPEELKERQ 7474272
>gb|AI100596.1|AI100596 34971 Lambda-PRL2 Arabidopsis thaliana cDNA clone 92N23XP 3', mRNA
sequence
Length = 338
Score = 104 bits (221), Expect = 2e-021
Identities = 44/64 (68%), Positives = 53/64 (82%)
Frame = -1 / +1
Query: 367 LKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQ 188
LKERQ +Q PEIQNILT P+M+QVL+DL ENP AAQ H++ P +M KIQKL+S+GIVQ
Sbjct: 34 LKERQAXGLQAPEIQNILTXPVMRQVLSDLXENPAAAQKHMQXPMIMNKIQKLISSGIVQ 213
Query: 187 MK*T 176
MK*T
Sbjct: 214 MK*T 225
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 903,333,869
Number of Sequences: 1013581
Number of extensions: 10742731
Number of successful extensions: 240789
Number of sequences better than 1.0e-020: 44
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 26562420012
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)