TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3311938.2.2
         (860 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NM_105241.3|  Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ...    56   3e-021

>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
           AT1G65680 (ATEXPB2) mRNA, complete cds
          Length = 822

 Score = 55.6 bits (115), Expect(4) = 3e-021
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +3 / +1

                                                    
Query: 108 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
           HFDL+GTAFGAMA  G++ +LR  G + + +++V+C Y  K
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGK 519




 Score = 43.7 bits (89), Expect(4) = 3e-021
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3 / +1

                                                   
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
           SD +  +  SWGA+W+ D   P++ P+++++T+    KTV
Sbjct: 634 SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTV 753




 Score = 30.9 bits (61), Expect(4) = 3e-021
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3 / +1

                                  
Query: 222 GSKVTFHLEKGCNPNYLALLVKY 290
           G  VTF ++KG N N  A+LV Y
Sbjct: 514 GKTVTFQVDKGSNANSFAVLVAY 582




 Score = 28.6 bits (56), Expect(4) = 3e-021
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3 / +1

                                 
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
           E G   V  +VIPA W+P   Y
Sbjct: 736 ESGKTVVASNVIPANWQPGAIY 801



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 1,665,711,191
Number of Sequences: 1013581
Number of extensions: 24411957
Number of successful extensions: 180234
Number of sequences better than 1.0e-020: 1
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 56630543420
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)