TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 62 5e-038
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 51 2e-027
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 51 2e-027
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 51 2e-027
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 51 2e-027
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 51 2e-027
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 51 3e-026
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 51 3e-026
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 51 3e-026
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 51 3e-026
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 51 3e-026
emb|AX589887.1| Sequence 69 from Patent WO02081695 51 3e-026
emb|AX652050.1| Sequence 948 from Patent WO03000898 51 3e-026
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 51 3e-026
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 51 1e-021
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 62.5 bits (130), Expect(6) = 5e-038
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V + PF+ M + G +FK G GCG+C+++KC + CS PV V ITD
Sbjct: 220 VAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITD 366
Score = 55.6 bits (115), Expect(6) = 5e-038
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+GTAFGAMA G++ +LR G + + +++V+C Y K
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGK 519
Score = 45.5 bits (93), Expect(6) = 5e-038
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3 / +1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD + + SWGA+W+ D P++ P+++R+T+ KTV
Sbjct: 634 SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTV 753
Score = 30.9 bits (61), Expect(6) = 5e-038
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKY 620
G VTF ++KG N N A+LV Y
Sbjct: 514 GKTVTFQVDKGSNANSFAVLVAY 582
Score = 30.4 bits (60), Expect(6) = 5e-038
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 174 SDWLDAKATWYGKPT 218
SDW A +TWYG PT
Sbjct: 133 SDWSIAGSTWYGNPT 177
Score = 25.8 bits (50), Expect(6) = 5e-038
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3 / +1
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V +VIPA W+P
Sbjct: 736 ESGKTVVASNVIPANWQP 789
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 51.0 bits (105), Expect(5) = 2e-027
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 582
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ P ++ N +FK+G GCG+C++++C + CS + V V ITD
Sbjct: 283 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 41.8 bits (85), Expect(5) = 2e-027
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 577 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 29.9 bits (59), Expect(5) = 2e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +1
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 196 SHWLPAVATWYGSP 237
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 754 PLKGPFSIKLTTLSAGKTL 810
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 51.0 bits (105), Expect(5) = 2e-027
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 587
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3 / +3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ P ++ N +FK+G GCG+C++++C + CS + V V ITD
Sbjct: 288 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 434
Score = 41.8 bits (85), Expect(5) = 2e-027
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3 / +3
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 582 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 743
Score = 29.9 bits (59), Expect(5) = 2e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 201 SHWLPAVATWYGSP 242
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 759 PLKGPFSIKLTTLSAGKTL 815
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 51.0 bits (105), Expect(5) = 2e-027
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 582
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ P ++ N +FK+G GCG+C++++C + CS + V V ITD
Sbjct: 283 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 41.8 bits (85), Expect(5) = 2e-027
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 577 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 29.9 bits (59), Expect(5) = 2e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +1
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 196 SHWLPAVATWYGSP 237
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 754 PLKGPFSIKLTTLSAGKTL 810
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 51.0 bits (105), Expect(5) = 2e-027
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 486
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ P ++ N +FK+G GCG+C++++C + CS + V V ITD
Sbjct: 187 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 333
Score = 41.8 bits (85), Expect(5) = 2e-027
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 481 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 642
Score = 29.9 bits (59), Expect(5) = 2e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +1
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 100 SHWLPAVATWYGSP 141
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 658 PLKGPFSIKLTTLSAGKTL 714
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 51.0 bits (105), Expect(5) = 2e-027
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 571
Score = 47.3 bits (97), Expect(5) = 2e-027
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ P ++ N +FK+G GCG+C++++C + CS + V V ITD
Sbjct: 272 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 418
Score = 41.8 bits (85), Expect(5) = 2e-027
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3 / +2
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 566 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 29.9 bits (59), Expect(5) = 2e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 185 SHWLPAVATWYGSP 226
Score = 27.2 bits (53), Expect(5) = 2e-027
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 743 PLKGPFSIKLTTLSAGKTL 799
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 571
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +2
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 566 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 263 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 743 PLKGPFSVKLTTLSNNKTL 799
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +2
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 182 WLPATATWYG 211
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 571
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +2
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 566 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 263 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 743 PLKGPFSVKLTTLSNNKTL 799
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +2
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 182 WLPATATWYG 211
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 569
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +3
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 564 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 725
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 261 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 413
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 741 PLKGPFSVKLTTLSNNKTL 797
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 180 WLPATATWYG 209
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 473
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +3
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 468 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 629
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 165 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 317
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 645 PLKGPFSVKLTTLSNNKTL 701
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 84 WLPATATWYG 113
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 50.6 bits (104), Expect(5) = 3e-026
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 43.7 bits (89), Expect(5) = 3e-026
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 28.6 bits (56), Expect(5) = 3e-026
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT KT+
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 25.8 bits (50), Expect(5) = 3e-026
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 51.0 bits (105), Expect(5) = 1e-021
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 571
Score = 40.9 bits (83), Expect(5) = 1e-021
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3 / +2
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L++LV++ ++ G+ + +KH WGA W
Sbjct: 566 GKNIAFHVNEGSTDFWLSMLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 29.9 bits (59), Expect(5) = 1e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKP 215
S WL A ATWYG P
Sbjct: 185 SHWLPAVATWYGSP 226
Score = 27.6 bits (54), Expect(5) = 1e-021
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3 / +2
Query: 339 SCFEIKCDKPAECSGKPVVVYITD 410
+C++++C + CS + V V ITD
Sbjct: 347 TCYKVRCLDKSICSRRAVTVIITD 418
Score = 27.2 bits (53), Expect(5) = 1e-021
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +++LTT KT+
Sbjct: 743 PLKGPFSIKLTTLSAGKTL 799
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,002,796,482
Number of Sequences: 1013581
Number of extensions: 30232074
Number of successful extensions: 206064
Number of sequences better than 1.0e-020: 15
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 67676903748
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)