TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY099882.1| Arabidopsis thaliana GTP cyclohydrolase I (A... 115 1e-024
gb|AF489530.1| Arabidopsis thaliana GTP cyclohydrolase I mR... 115 1e-024
gb|BT006600.1| Arabidopsis thaliana At3g07270 mRNA, complet... 115 1e-024
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 115 1e-024
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 115 1e-024
ref|NM_111607.2| Arabidopsis thaliana GTP cyclohydrolase I ... 115 1e-024
ref|NM_202517.1| Arabidopsis thaliana GTP cyclohydrolase I ... 115 1e-024
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 115 1e-024
emb|BX822377.1|CNS0A5WV Arabidopsis thaliana Full-length cD... 114 3e-024
>gb|AY099882.1| Arabidopsis thaliana GTP cyclohydrolase I (At3g07270) mRNA, complete
cds
Length = 1904
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +3
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 1476 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 1655
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 1656 STATIAVLGRFSSDNSARAMFLDKI 1730
>gb|AF489530.1| Arabidopsis thaliana GTP cyclohydrolase I mRNA, complete cds
Length = 1401
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 1102 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 1281
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 1282 STATIAVLGRFSSDNSARAMFLDKI 1356
>gb|BT006600.1| Arabidopsis thaliana At3g07270 mRNA, complete cds
Length = 1401
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 1102 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 1281
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 1282 STATIAVLGRFSSDNSARAMFLDKI 1356
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / -1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 18023 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 17844
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 17843 STATIAVLGRFSSDNSARAMFLDKI 17769
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / -1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 2249658 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 2249479
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 2249478 STATIAVLGRFSSDNSARAMFLDKI 2249404
>ref|NM_111607.2| Arabidopsis thaliana GTP cyclohydrolase I AT3G07270 transcript
variant AT3G07270.1 mRNA, complete cds
Length = 1904
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +3
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 1476 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 1655
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 1656 STATIAVLGRFSSDNSARAMFLDKI 1730
>ref|NM_202517.1| Arabidopsis thaliana GTP cyclohydrolase I AT3G07270 transcript
variant AT3G07270.2 mRNA, complete cds
Length = 1537
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +2
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 1109 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 1288
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 1289 STATIAVLGRFSSDNSARAMFLDKI 1363
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 115 bits (245), Expect = 1e-024
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +3 / +1
Query: 27 IDRSHFQALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRS 206
+ S +A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S
Sbjct: 2316766 VGSSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGS 2316945
Query: 207 NTATIAVLGQFLADPSAKACFLQNV 281
+TATIAVLG+F +D SA+A FL +
Sbjct: 2316946 STATIAVLGRFSSDNSARAMFLDKI 2317020
>emb|BX822377.1|CNS0A5WV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB31ZG09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1537
Score = 114 bits (243), Expect = 3e-024
Identities = 50/79 (63%), Positives = 60/79 (75%)
Frame = +3 / +1
Query: 45 QALVHFYGCKLQVQERMTRQIAEAVYSVSHNGAMVVVEANHICMISRGIEKIRSNTATIA 224
+A+VHFYG KLQVQERMTRQIAE + + +VV EA H CMISRGIEK S+TATIA
Sbjct: 1198 KAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGSSTATIA 1377
Query: 225 VLGQFLADPSAKACFLQNV 281
VLG+F +D SA+A FL +
Sbjct: 1378 VLGRFSSDNSARAMFLDKI 1434
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,252,884,319
Number of Sequences: 1013581
Number of extensions: 17694426
Number of successful extensions: 297709
Number of sequences better than 1.0e-020: 11
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 31151400210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)