TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, ... 195 8e-049
gb|AY051001.1| Arabidopsis thaliana putative sucrose synthe... 195 8e-049
gb|AY142511.1| Arabidopsis thaliana putative sucrose synthe... 195 8e-049
emb|AX507720.1| Sequence 2415 from Patent WO0216655 195 8e-049
emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cD... 195 8e-049
ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransfera... 195 8e-049
ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHAS... 189 7e-047
dbj|AB016872.1| Arabidopsis thaliana genomic DNA, chromosom... 111 1e-041
emb|X60987.1|ATSUCSYN A.thaliana sucrose synthase gene 111 1e-041
gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 115 3e-041
emb|AX506925.1| Sequence 1620 from Patent WO0216655 170 4e-041
emb|AX651931.1| Sequence 808 from Patent WO03000898 170 4e-041
ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHAS... 170 4e-041
ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNT... 170 4e-041
gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltra... 169 6e-041
ref|NM_105997.1| Arabidopsis thaliana UDP-glycosyltransfera... 169 8e-041
emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome... 115 1e-040
gb|AY034958.1| Arabidopsis thaliana putative sucrose syntha... 167 3e-040
ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransfera... 167 3e-040
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 115 2e-039
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 104 8e-037
emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase 104 1e-036
ref|NM_123077.2| Arabidopsis thaliana UDP-glycosyltransfera... 154 3e-036
emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome ... 100 5e-036
gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III ... 100 5e-036
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 95 1e-035
gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BA... 95 1e-035
dbj|AK222090.1| Arabidopsis thaliana mRNA for sucrose-UDP g... 140 4e-032
gb|AV813826.1|AV813826 AV813826 RAFL9 Arabidopsis thaliana ... 73 1e-031
gb|CB257489.1|CB257489 63-E012733-014-002-M24-T7R MPIZ-ADIS... 127 2e-028
dbj|AB017068.1| Arabidopsis thaliana genomic DNA, chromosom... 84 3e-028
gb|BP830360.1|BP830360 BP830360 RAFL19 Arabidopsis thaliana... 79 2e-025
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 115 1e-024
gb|BZ378282.1|BZ378282 SALK_107491.44.40.x Arabidopsis thal... 76 3e-024
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 111 2e-023
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 111 2e-023
>gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, complete cds
Length = 2898
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1764 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1943
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1944 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 2069
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -3
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 2119 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1940
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1939 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1766
>gb|AY051001.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2904
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1739 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1918
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1919 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 2044
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -1
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 2094 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1915
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1914 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1741
>gb|AY142511.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2506
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1525 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1704
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1705 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 1830
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -3
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 1880 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1701
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1700 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1527
>emb|AX507720.1| Sequence 2415 from Patent WO0216655
Length = 2430
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1525 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1704
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1705 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 1830
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -2
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 1880 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1701
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1700 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1527
>emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH64ZE09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2686
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1586 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1765
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1766 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 1891
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -2
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 1941 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1762
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1761 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1588
>ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT4G02280 mRNA,
complete cds
Length = 2913
Score = 195 bits (421), Expect = 8e-049
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+G L
Sbjct: 1764 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHVGTLS 1943
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 1944 DRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 2069
Score = 117 bits (250), Expect = 3e-025
Identities = 62/118 (52%), Positives = 68/118 (57%)
Frame = -1 / -3
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS S + L A TTR T P MFFTLSSLA+EK +GFDRS
Sbjct: 2119 ISTISSLSLDLFTSMLPAITTRLTSSLNFVFLLYISTKPEMFFTLSSLAIEKSIGFDRSL 1940
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
P CSS SG * SIEP + VS L S GKYM MSAPGET+LNFGS TS+P TT
Sbjct: 1939 SVPTCSSVWSGL*SISSIEPCKAVSLLVSSEYGKYMVMSAPGETMLNFGSNTSMPCTT 1766
>ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHASE 2);
UDP-glycosyltransferase/ sucrose synthase/ transferase,
transferring glycosyl groups AT5G49190 (SUS2) mRNA,
complete cds
Length = 2511
Score = 189 bits (407), Expect = 7e-047
Identities = 76/101 (75%), Positives = 91/101 (90%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADM+IYFP+++K +RLT+LH SIE L++ EQNDEH+G L
Sbjct: 1516 RVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHVGLLS 1695
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D+SKPI+FSMARLDRVKN+TGLVE +AK +KLREL NLV+V
Sbjct: 1696 DQSKPIIFSMARLDRVKNLTGLVECYAKNSKLRELANLVIV 1818
Score = 116 bits (249), Expect = 4e-025
Identities = 59/101 (58%), Positives = 64/101 (63%)
Frame = -1 / -2
Query: 304 TTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSSRCPMCSSFCSGS*IKFSI 125
T TRF SPV FFTLSSLA+EK +GFD S P CSSFCS SI
Sbjct: 1817 TITRFASSLSLLFLA*HSTSPVKFFTLSSLAIEKMIGFDWSLSKPTCSSFCSALKRSSSI 1638
Query: 124 EP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTTR 2
+ *R VS L+ S GKYM +SAPGETILN GSKTSIP TTR
Sbjct: 1637 DS*RAVSLLSLSEYGKYMVISAPGETILNLGSKTSIP*TTR 1515
Score = 105 bits (224), Expect = 1e-021
Identities = 48/106 (45%), Positives = 70/106 (66%)
Frame = -3 / -1
Query: 320 VPVRCNDDKVYQLPQLSALSKSFDQPCYVLHPVESCHGEEDGL*PVIQMPNVFIVLLRVI 141
+ V + +K+ +L +L+ L +F+ P V HPV+SCH E+D L V Q N+ I+L
Sbjct: 1833 IDVATDYNKICKLSKLAILGIAFN*PSQVFHPVKSCHREDDWLRLVAQ*TNMLIILFGTK 1654
Query: 140 NQIFD*TMKRGESLGLLGMWKVYGHVSSRRDYIELWIEDIDPMDNS 3
+ F+* MK ES L+ +WKVYGH+SS RDYI+L I+DI+ M+NS
Sbjct: 1653 EEFFN*LMKGSESSFLVRIWKVYGHISSWRDYIKLRIKDINSMNNS 1516
>dbj|AB016872.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3
Length = 86001
Score = 111 bits (237), Expect(2) = 1e-041
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3 / -1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP+++K +RLT+LH SIE L++ EQNDEH+
Sbjct: 22740 RVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHV 22573
Score = 80.8 bits (170), Expect(2) = 1e-041
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3 / -1
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
G L D+SKPI+FSMARLDRVKN+TGLVE +AK +KLREL NLV+V
Sbjct: 22464 GLLSDQSKPIIFSMARLDRVKNLTGLVECYAKNSKLRELANLVIV 22330
>emb|X60987.1|ATSUCSYN A.thaliana sucrose synthase gene
Length = 4441
Score = 111 bits (237), Expect(2) = 1e-041
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP+++K +RLT+LH SIE L++ EQNDEH+
Sbjct: 3138 RVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHV 3305
Score = 80.8 bits (170), Expect(2) = 1e-041
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
G L D+SKPI+FSMARLDRVKN+TGLVE +AK +KLREL NLV+V
Sbjct: 3414 GLLSDQSKPIIFSMARLDRVKNLTGLVECYAKNSKLRELANLVIV 3548
>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3
Length = 48689
Score = 115 bits (246), Expect(2) = 3e-041
Identities = 42/56 (75%), Positives = 52/56 (92%)
Frame = +3 / -3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+
Sbjct: 19365 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHV 19198
Score = 83.1 bits (175), Expect(2) = 3e-041
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +3 / -3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G L DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 19053 GTLSDRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 18916
>emb|AX506925.1| Sequence 1620 from Patent WO0216655
Length = 2427
Score = 170 bits (365), Expect = 4e-041
Identities = 73/114 (64%), Positives = 85/114 (74%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 1525 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLK 1704
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 1705 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 1866
>emb|AX651931.1| Sequence 808 from Patent WO03000898
Length = 2427
Score = 170 bits (365), Expect = 4e-041
Identities = 73/114 (64%), Positives = 85/114 (74%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 1525 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLK 1704
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 1705 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 1866
>ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.1 mRNA, complete cds
Length = 2887
Score = 170 bits (365), Expect = 4e-041
Identities = 73/114 (64%), Positives = 85/114 (74%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 1612 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLK 1791
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 1792 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 1953
>ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.2 mRNA, complete cds
Length = 2879
Score = 170 bits (365), Expect = 4e-041
Identities = 73/114 (64%), Positives = 85/114 (74%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 1604 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLK 1783
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 1784 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 1945
>gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltransferase (At5g20830)
mRNA, complete cds
Length = 1942
Score = 169 bits (364), Expect = 6e-041
Identities = 70/101 (69%), Positives = 82/101 (81%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 1612 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLK 1791
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV
Sbjct: 1792 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVV 1914
>ref|NM_105997.1| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase
AT1G73370 mRNA, complete cds
Length = 2883
Score = 169 bits (363), Expect = 8e-041
Identities = 73/119 (61%), Positives = 87/119 (73%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVV GIDVFDPKFNI +PGAD S+YFP+TEK KR T H SI+ L+Y+ + N EH+G+L
Sbjct: 1537 RVVSGIDVFDPKFNIAAPGADQSVYFPYTEKDKRFTKFHPSIQELLYNEKDNAEHMGYLA 1716
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEEWKPEI 359
DR KPI+FSMARLD VKNITGLVE + K +LRE+ NLVVVA + E K EI
Sbjct: 1717 DREKPIIFSMARLDTVKNITGLVEWYGKDKRLREMANLVVVAGFFDMSKSNDREEKAEI 1893
Score = 111 bits (236), Expect = 3e-023
Identities = 58/118 (49%), Positives = 68/118 (57%)
Frame = -1 / -2
Query: 358 ISGFHSSYIPLAECPCVATTTRFTXXXXXXXXXXXXXSPVMFFTLSSLAMEKRMGFDRSS 179
IS F S + ATTTR PVMFFT+SSLA+EK +GF S+
Sbjct: 1892 ISAFSSLSLDFDMSKNPATTTRLAISLSLLSLPYHSTKPVMFFTVSSLAIEKIIGFSLSA 1713
Query: 178 RCPMCSSFCSGS*IKFSIEP*REVSRLAFSVCGKYMDMSAPGETILNFGSKTSIPWTT 5
R PMCS+ * IE * V+RL+FSV GKY D SAPG +LNFGSKTS+P TT
Sbjct: 1712 RYPMCSALSFSL*SSSCIEG*NLVNRLSFSV*GKYTD*SAPGAAMLNFGSKTSMPETT 1539
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
Length = 194892
Score = 115 bits (246), Expect(2) = 1e-040
Identities = 42/56 (75%), Positives = 52/56 (92%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+
Sbjct: 32913 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHV 33080
Score = 83.1 bits (175), Expect(2) = 1e-040
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G L DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 33225 GTLSDRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 33362
>gb|AY034958.1| Arabidopsis thaliana putative sucrose synthase (At3g43190) mRNA,
complete cds
Length = 1798
Score = 167 bits (359), Expect = 3e-040
Identities = 72/114 (63%), Positives = 87/114 (76%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYF +TE+ +RLT+ H IE L+Y +N+EH+ L
Sbjct: 742 RVVHGIDVFDPKFNIVSPGADMSIYFAYTEEKRRLTAFHLEIEELLYSDVENEEHLCVLK 921
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPI+F+MARLDRVKN++GLVE + K +LRELVNLVVV S EE
Sbjct: 922 DKKKPIIFTMARLDRVKNLSGLVEWYGKNTRLRELVNLVVVGGDRRKESQDNEE 1083
>ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT3G43190 mRNA,
complete cds
Length = 2717
Score = 167 bits (359), Expect = 3e-040
Identities = 72/114 (63%), Positives = 87/114 (76%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVVHGIDVFDPKFNIVSPGADMSIYF +TE+ +RLT+ H IE L+Y +N+EH+ L
Sbjct: 1678 RVVHGIDVFDPKFNIVSPGADMSIYFAYTEEKRRLTAFHLEIEELLYSDVENEEHLCVLK 1857
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
D+ KPI+F+MARLDRVKN++GLVE + K +LRELVNLVVV S EE
Sbjct: 1858 DKKKPIIFTMARLDRVKNLSGLVEWYGKNTRLRELVNLVVVGGDRRKESQDNEE 2019
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 115 bits (246), Expect(2) = 2e-039
Identities = 42/56 (75%), Positives = 52/56 (92%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+
Sbjct: 996073 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHV 996240
Score = 83.1 bits (175), Expect(2) = 2e-039
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +3 / +1
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G L DRSKPILFSMARLD+VKNI+GLVE ++K KLRELVNLVV+A
Sbjct: 996385 GTLSDRSKPILFSMARLDKVKNISGLVEMYSKNTKLRELVNLVVIA 996522
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 104 bits (222), Expect(2) = 8e-037
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +3 / -3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+
Sbjct: 84733 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 84566
Score = 71.2 bits (149), Expect(2) = 8e-037
Identities = 33/56 (58%), Positives = 39/56 (69%)
Frame = +3 / -2
Query: 177 LDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
L D+ KPILF+MARLDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 84482 LKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 84315
>emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase
Length = 5007
Score = 104 bits (222), Expect(2) = 1e-036
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+
Sbjct: 3768 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 3935
Score = 70.7 bits (148), Expect(2) = 1e-036
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3 / +2
Query: 177 LDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
L D+ KPILF+MARLDRVKN++GLVE + K +LREL NLV+V S EE
Sbjct: 4019 LKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVIVGGDRRKESKDNEE 4186
>ref|NM_123077.2| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase
AT5G37180 mRNA, complete cds
Length = 2511
Score = 154 bits (330), Expect = 3e-036
Identities = 63/101 (62%), Positives = 80/101 (79%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
RVV GI+VFDP+FNI +PGAD SIYFP T + +R T + SI+ L+Y +NDEHIG+L
Sbjct: 1504 RVVSGINVFDPRFNIAAPGADDSIYFPFTAQDRRFTKFYTSIDELLYSQSENDEHIGYLV 1683
Query: 183 DRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
D+ KPI+FSMARLD VKN+TGL E +AK +LR+LVNLV+V
Sbjct: 1684 DKKKPIIFSMARLDVVKNLTGLTEWYAKNKRLRDLVNLVIV 1806
>emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F7K15
Length = 110800
Score = 100 bits (214), Expect(2) = 5e-036
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYF +TE+ +RLT+ H IE L+Y +N+EH+
Sbjct: 16005 RVVHGIDVFDPKFNIVSPGADMSIYFAYTEEKRRLTAFHLEIEELLYSDVENEEHL 15838
Score = 72.1 bits (151), Expect(2) = 5e-036
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +3 / -3
Query: 177 LDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
L D+ KPI+F+MARLDRVKN++GLVE + K +LRELVNLVVV S EE
Sbjct: 15746 LKDKKKPIIFTMARLDRVKNLSGLVEWYGKNTRLRELVNLVVVGGDRRKESQDNEE 15579
>gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III clone TAMU-T15O15, *** SEQUENCING
IN PROGRESS ***, 3 unordered pieces
Length = 80970
Score = 100 bits (214), Expect(2) = 5e-036
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYF +TE+ +RLT+ H IE L+Y +N+EH+
Sbjct: 10243 RVVHGIDVFDPKFNIVSPGADMSIYFAYTEEKRRLTAFHLEIEELLYSDVENEEHL 10410
Score = 72.1 bits (151), Expect(2) = 5e-036
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +3 / +2
Query: 177 LDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
L D+ KPI+F+MARLDRVKN++GLVE + K +LRELVNLVVV S EE
Sbjct: 10502 LKDKKKPIIFTMARLDRVKNLSGLVEWYGKNTRLRELVNLVVVGGDRRKESQDNEE 10669
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 95.0 bits (201), Expect(2) = 1e-035
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVV GIDVFDPKFNI +PGAD S+YFP+TEK KR T H SI+ L+Y+ + N EH+
Sbjct: 11827381 RVVSGIDVFDPKFNIAAPGADQSVYFPYTEKDKRFTKFHPSIQELLYNEKDNAEHM 11827214
Score = 77.1 bits (162), Expect(2) = 1e-035
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3 / -1
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEEWK 350
G+L DR KPI+FSMARLD VKNITGLVE + K +LRE+ NLVVVA + E K
Sbjct: 11827139 GYLADREKPIIFSMARLDTVKNITGLVEWYGKDKRLREMANLVVVAGFFDMSKSNDREEK 11826960
Query: 351 PEI 359
EI
Sbjct: 11826959 AEI 11826951
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete
sequence
Length = 90459
Score = 95.0 bits (201), Expect(2) = 1e-035
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVV GIDVFDPKFNI +PGAD S+YFP+TEK KR T H SI+ L+Y+ + N EH+
Sbjct: 66913 RVVSGIDVFDPKFNIAAPGADQSVYFPYTEKDKRFTKFHPSIQELLYNEKDNAEHM 67080
Score = 77.1 bits (162), Expect(2) = 1e-035
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEEWK 350
G+L DR KPI+FSMARLD VKNITGLVE + K +LRE+ NLVVVA + E K
Sbjct: 67155 GYLADREKPIIFSMARLDTVKNITGLVEWYGKDKRLREMANLVVVAGFFDMSKSNDREEK 67334
Query: 351 PEI 359
EI
Sbjct: 67335 AEI 67343
>dbj|AK222090.1| Arabidopsis thaliana mRNA for sucrose-UDP glucosyltransferase,
complete cds, clone: RAFL22-85-C03
Length = 1149
Score = 140 bits (300), Expect = 4e-032
Identities = 61/102 (59%), Positives = 73/102 (71%)
Frame = +3 / +1
Query: 39 FNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLDDRSKPILFSMAR 218
FNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L D+ KPILF+MAR
Sbjct: 1 FNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMAR 180
Query: 219 LDRVKNITGLVEAFAKCAKLRELVNLVVVATHGHSASGIYEE 344
LDRVKN++GLVE + K +LREL NLVVV S EE
Sbjct: 181 LDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 306
>gb|AV813826.1|AV813826 AV813826 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-80-E22 3',
mRNA sequence
Length = 402
Score = 73.5 bits (154), Expect(3) = 1e-031
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +3 / -3
Query: 153 QNDEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
+N EH+ L ++ KPILF+MARLDRVKN++GLVE + K +LREL NLV V
Sbjct: 181 ENKEHLCVLKNKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVFV 29
Score = 69.3 bits (145), Expect(3) = 1e-031
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFP 83
RVVHGIDVFDPKFNIVSPGADMSIYFP
Sbjct: 329 RVVHGIDVFDPKFNIVSPGADMSIYFP 249
Score = 32.7 bits (65), Expect(3) = 1e-031
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3 / -1
Query: 81 PHTEKAKRLTSLHGSIENLIY 143
P+TE+ +RLT H IE L+Y
Sbjct: 252 PYTEEKRRLTKFHSEIEELLY 190
>gb|CB257489.1|CB257489 63-E012733-014-002-M24-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771M242Q 5-PRIME, mRNA sequence
Length = 411
Score = 127 bits (273), Expect = 2e-028
Identities = 51/75 (68%), Positives = 60/75 (80%)
Frame = +3 / +2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHIGHLD 182
+VVHGIDVFDPKFNIV PGADMSIYFP+TE+ +RLT H IE L+Y +N EH+ L
Sbjct: 185 QVVHGIDVFDPKFNIVCPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENREHLCVLK 364
Query: 183 DRSKPILFSMARLDR 227
D+ KPILF+MARLDR
Sbjct: 365 DKKKPILFTMARLDR 409
>dbj|AB017068.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJG14
Length = 86121
Score = 84.0 bits (177), Expect(2) = 3e-028
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = +3 / +1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVV GI+VFDP+FNI +PGAD SIYFP T + +R T + SI+ L+Y +NDEH+
Sbjct: 83338 RVVSGINVFDPRFNIAAPGADDSIYFPFTAQDRRFTKFYTSIDELLYSQSENDEHM 83505
Score = 71.6 bits (150), Expect(2) = 3e-028
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
G+L D+ KPI+FSMARLD VKN+TGL E +AK +LR+LVNLV+V
Sbjct: 83679 GYLVDKKKPIIFSMARLDVVKNLTGLTEWYAKNKRLRDLVNLVIV 83813
>gb|BP830360.1|BP830360 BP830360 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-85-C03 5',
mRNA sequence
Length = 406
Score = 78.5 bits (165), Expect(2) = 2e-025
Identities = 34/56 (60%), Positives = 42/56 (75%)
Frame = +3 / +2
Query: 138 IYDPEQNDEHIGHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVV 305
+Y +N EH+ L D+ KPILF+MARLDRVKN +GLVE + K +LREL NLVVV
Sbjct: 98 LYSDVENKEHLCVLKDKKKPILFTMARLDRVKNWSGLVEWYGKNTRLRELANLVVV 265
Score = 59.3 bits (123), Expect(2) = 2e-025
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3 / +3
Query: 42 NIVSPGADMSIYFPHTEKAKRLTSLHGSIENL 137
NIVSPGADMSIYFP+TE+ +RLT H IE L
Sbjct: 3 NIVSPGADMSIYFPYTEEKRRLTKFHSEIEEL 98
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 115 bits (246), Expect = 1e-024
Identities = 42/56 (75%), Positives = 52/56 (92%)
Frame = +3 / +3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP++E+ +RLT+LHGSIE ++Y P+Q DEH+
Sbjct: 997263 RVVHGIDVFDPKFNIVSPGADMTIYFPYSEETRRLTALHGSIEEMLYSPDQTDEHV 997430
>gb|BZ378282.1|BZ378282 SALK_107491.44.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_107491.44.40.x,
DNA sequence
Length = 376
Score = 76.2 bits (160), Expect(2) = 3e-024
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +3 / +3
Query: 171 GHLDDRSKPILFSMARLDRVKNITGLVEAFAKCAKLRELVNLVVVA 308
G+L DR KPI+FSMARLD VKNITGLVE + K +LRE+ NLVVVA
Sbjct: 198 GYLADREKPIIFSMARLDTVKNITGLVEWYGKDKRLREMANLVVVA 335
Score = 57.0 bits (118), Expect(2) = 3e-024
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +3 / +1
Query: 51 SPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
+PGAD S+YFP+TEK R H SI+ L+Y+ + N EH+
Sbjct: 4 APGADQSVYFPYTEKDTRFXKFHPSIQELLYNEKDNAEHM 123
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 111 bits (237), Expect = 2e-023
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3 / -1
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP+++K +RLT+LH SIE L++ EQNDEH+
Sbjct: 17984758 RVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHV 17984591
Score = 104 bits (222), Expect = 2e-021
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +3 / -2
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+
Sbjct: 6764283 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 6764116
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 111 bits (237), Expect = 2e-023
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +3 / -3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADM+IYFP+++K +RLT+LH SIE L++ EQNDEH+
Sbjct: 19961857 RVVHGIDVFDPKFNIVSPGADMTIYFPYSDKERRLTALHESIEELLFSAEQNDEHV 19961690
Score = 104 bits (222), Expect = 2e-021
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +3 / -3
Query: 3 RVVHGIDVFDPKFNIVSPGADMSIYFPHTEKAKRLTSLHGSIENLIYDPEQNDEHI 170
RVVHGIDVFDPKFNIVSPGADMSIYFP+TE+ +RLT H IE L+Y +N EH+
Sbjct: 7051753 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 7051586
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,243,658,517
Number of Sequences: 1013581
Number of extensions: 16543163
Number of successful extensions: 197444
Number of sequences better than 1.0e-020: 43
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 34612666900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)