TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_122467.2| Arabidopsis thaliana protein binding / ubi... 230 8e-062
gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA... 226 5e-058
gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene... 226 5e-058
gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, compl... 226 5e-058
gb|DQ059131.1| Arabidopsis thaliana RING finger family prot... 226 5e-058
ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein lig... 226 5e-058
gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRN... 216 1e-057
gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green ... 220 4e-056
emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cD... 205 5e-054
gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana ... 202 1e-050
gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS... 184 2e-048
ref|NM_121870.3| Arabidopsis thaliana protein binding / ubi... 111 2e-043
gb|AY064060.1| Arabidopsis thaliana unknown protein (At5g18... 111 2e-043
emb|BX829794.1|CNS0A03H Arabidopsis thaliana Full-length cD... 111 2e-043
gb|AY096370.1| Arabidopsis thaliana unknown protein (At5g18... 111 2e-043
emb|CQ803772.1| Sequence 183 from Patent WO2004035798 111 2e-043
ref|NM_116162.4| Arabidopsis thaliana protein binding / ubi... 116 6e-043
emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cD... 116 6e-043
gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complet... 116 6e-043
gb|BP562733.1|BP562733 BP562733 RAFL14 Arabidopsis thaliana... 116 6e-043
gb|BP798029.1|BP798029 BP798029 RAFL14 Arabidopsis thaliana... 111 2e-041
gb|BP823729.1|BP823729 BP823729 RAFL19 Arabidopsis thaliana... 111 2e-041
emb|BX830637.1|CNS0A048 Arabidopsis thaliana Full-length cD... 103 1e-040
gb|CA781795.1|CA781795 050D05AF Infected Arabidopsis Leaf A... 111 5e-040
emb|BX841616.1|CNS09YKN Arabidopsis thaliana Full-length cD... 111 6e-038
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 73 5e-036
gb|Z37684.1|Z37684 ATTS4149 Versailles-VB Arabidopsis thali... 100 7e-035
gb|BP833602.1|BP833602 BP833602 RAFL19 Arabidopsis thaliana... 75 4e-033
gb|BP824281.1|BP824281 BP824281 RAFL19 Arabidopsis thaliana... 86 3e-031
gb|BP813040.1|BP813040 BP813040 RAFL19 Arabidopsis thaliana... 95 6e-031
gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana... 131 2e-029
gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana... 131 2e-029
gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana... 128 1e-028
gb|BP821006.1|BP821006 BP821006 RAFL19 Arabidopsis thaliana... 86 3e-028
dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosom... 79 4e-028
gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana... 122 7e-027
gb|T04243.1|T04243 290 Lambda-PRL2 Arabidopsis thaliana cDN... 120 5e-026
gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana... 119 6e-026
gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana... 119 9e-026
gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana... 117 2e-025
gb|AV550477.1|AV550477 AV550477 Arabidopsis thaliana roots ... 80 2e-025
gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana... 116 4e-025
gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana... 116 4e-025
gb|BP853213.1|BP853213 BP853213 RAFL21 Arabidopsis thaliana... 112 8e-024
gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thali... 89 2e-023
gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana... 107 2e-023
emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome... 69 1e-021
emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequenc... 73 1e-021
gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana... 103 4e-021
gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis tha... 76 5e-021
>ref|NM_122467.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT5G25560 mRNA, complete cds
Length = 1034
Score = 230 bits (497), Expect(2) = 8e-062
Identities = 79/121 (65%), Positives = 97/121 (80%)
Frame = +3 / +3
Query: 210 EKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVC 389
++G+M YGCPHYRRRC IRAPCCNEIF C HCH E KN+I +D+ +RH++PRH+V+QV+C
Sbjct: 270 DRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVIC 449
Query: 390 SLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCS 569
LCGTEQEV Q+CI+CGVCMGKYFC +CKL+DDD SK+QYHC+ EN FHC
Sbjct: 450 LLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCY 629
Query: 570 K 572
K
Sbjct: 630 K 632
Score = 131 bits (280), Expect = 2e-029
Identities = 66/119 (55%), Positives = 71/119 (59%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
Q K+FS Q YC L+ SSS SL QKYFPM TPQ I TSCSVP ++
Sbjct: 625 Q*KKFSRPPILQIPHPSQWYCFLDVSSS*SLQTLQKYFPMHTPQWIQIWPTSCSVPQSKQ 446
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
TC T WRG SCL S M F S Q Q KISLQQGALM+HLLL*CGHP I P S
Sbjct: 445 ITCSTWWRGISCLCF*STFMLFFAS**Q*WQPKISLQQGALMQHLLL*CGHPYSISPLS 269
Score = 126 bits (269), Expect = 8e-028
Identities = 58/115 (50%), Positives = 75/115 (65%)
Frame = -1 / -1
Query: 566 TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ*A 387
TV+ I +SDS ST +AV+L FR II+ E A TEVLPHA++ +DT L+HLLFS T+*
Sbjct: 626 TVKEIFTSSDSANSTPIAVVLFFRRIIIVELADFTEVLPHAHSTVDTNLAHLLFSTTK*T 447
Query: 386 YNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVH 222
NL + +A MPL I +L I+ V A K+ I ARSS A S+MWT I+H
Sbjct: 446 NNLFNLVARNIMPLLLIYIYVVLRLIMTVMATKDLITARSSNATPSSVMWTSILH 282
Score = 104 bits (221), Expect = 3e-021
Identities = 56/122 (45%), Positives = 75/122 (61%)
Frame = +1 / +1
Query: 202 RNLRKG*CTMGVHIIEGDAA*ELLAAMKFLIADTATMKLRIPLKLIK*RGMNFHAMKCSR 381
++L + * +M VHI E A ELLA M+ L+A T M+ R I+ RGM F A K +R
Sbjct: 262 KSLIED*WSMDVHITEEGVALELLAVMRSLVAITVIMRRRTT*M*IRSRGMIFLATKLNR 441
Query: 382 LYAHCVALNRRCDKYVSIAVFAWGSTSVVCANSSTMMSLNSSITATDVEYVESEAGRIPS 561
L+ + V LN+R K+VS AWGSTSV A+S+ M+ L +S TA VE+ ESE +I
Sbjct: 442 LFVYFVVLNKRWAKFVSTVECAWGSTSVKSASSTMMIRLKNSTTAMGVEFAESEDVKISF 621
Query: 562 TV 567
TV
Sbjct: 622 TV 627
Score = 29.0 bits (57), Expect(2) = 8e-062
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 615 FFHCYKCGCCYSILLK 662
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
Length = 1183
Score = 226 bits (488), Expect = 5e-058
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 173 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 352
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXX 536
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+QYHC+
Sbjct: 353 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICR 532
Query: 537 XXXXENSFHCSK 572
EN FHC +
Sbjct: 533 TGGEENFFHCKR 568
Score = 153 bits (328), Expect = 5e-036
Identities = 72/119 (60%), Positives = 77/119 (64%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+FS Q*YC LE SSSK+LH QKYFP+ TPQL C TSCSV +EH
Sbjct: 561 QWKKFSSPPVLQIPHSSQ*YCFLERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEH 382
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T TS RGSSCL SI E L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 381 MTFETSCRGSSCL*CCSI*RESLASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 205
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
Length = 876
Score = 226 bits (488), Expect = 5e-058
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 22 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 201
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXX 536
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+QYHC+
Sbjct: 202 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICR 381
Query: 537 XXXXENSFHCSK 572
EN FHC +
Sbjct: 382 TGGEENFFHCKR 417
Score = 153 bits (328), Expect = 5e-036
Identities = 72/119 (60%), Positives = 77/119 (64%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+FS Q*YC LE SSSK+LH QKYFP+ TPQL C TSCSV +EH
Sbjct: 410 QWKKFSSPPVLQIPHSSQ*YCFLERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEH 231
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T TS RGSSCL SI E L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 230 MTFETSCRGSSCL*CCSI*RESLASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 54
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
Length = 1145
Score = 226 bits (488), Expect = 5e-058
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 173 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 352
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXX 536
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+QYHC+
Sbjct: 353 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICR 532
Query: 537 XXXXENSFHCSK 572
EN FHC +
Sbjct: 533 TGGEENFFHCKR 568
Score = 153 bits (328), Expect = 5e-036
Identities = 72/119 (60%), Positives = 77/119 (64%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+FS Q*YC LE SSSK+LH QKYFP+ TPQL C TSCSV +EH
Sbjct: 561 QWKKFSSPPVLQIPHSSQ*YCFLERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEH 382
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T TS RGSSCL SI E L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 381 MTFETSCRGSSCL*CCSI*RESLASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 205
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
complete cds
Length = 876
Score = 226 bits (488), Expect = 5e-058
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 22 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 201
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXX 536
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+QYHC+
Sbjct: 202 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICR 381
Query: 537 XXXXENSFHCSK 572
EN FHC +
Sbjct: 382 TGGEENFFHCKR 417
Score = 153 bits (328), Expect = 5e-036
Identities = 72/119 (60%), Positives = 77/119 (64%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+FS Q*YC LE SSSK+LH QKYFP+ TPQL C TSCSV +EH
Sbjct: 410 QWKKFSSPPVLQIPHSSQ*YCFLERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEH 231
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T TS RGSSCL SI E L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 230 MTFETSCRGSSCL*CCSI*RESLASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 54
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT5G22920 mRNA, complete cds
Length = 1262
Score = 226 bits (488), Expect = 5e-058
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +3 / +3
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 174 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 353
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXX 536
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+QYHC+
Sbjct: 354 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICR 533
Query: 537 XXXXENSFHCSK 572
EN FHC +
Sbjct: 534 TGGEENFFHCKR 569
Score = 153 bits (328), Expect = 5e-036
Identities = 72/119 (60%), Positives = 77/119 (64%)
Frame = -2 / -2
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
QWK+FS Q*YC LE SSSK+LH QKYFP+ TPQL C TSCSV +EH
Sbjct: 562 QWKKFSSPPVLQIPHSSQ*YCFLERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEH 383
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
T TS RGSSCL SI E L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 382 MTFETSCRGSSCL*CCSI*RESLASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 206
>gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRNA sequence
Length = 2903
Score = 216 bits (467), Expect(2) = 1e-057
Identities = 75/113 (66%), Positives = 90/113 (79%)
Frame = +3 / +2
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLCGTEQE 413
CPHYRRRC IRAPCCNEIF C HCH E KN+I +D+ +RH++PRH+V+QV+C LCGTEQE
Sbjct: 1850 CPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVICLLCGTEQE 2029
Query: 414 VRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSFHCSK 572
V Q+CI+CGVCMGKYFC +CKL+DDD SK+QYHC+ EN FHC K
Sbjct: 2030 VGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYK 2188
Score = 124 bits (265), Expect = 3e-027
Identities = 62/111 (55%), Positives = 67/111 (60%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
Q K+FS Q YC L+ SSS SL QKYFPM TPQ I TSCSVP ++
Sbjct: 2181 Q*KKFSRPPILQIPHPSQWYCFLDVSSS*SLQTLQKYFPMHTPQWIQIWPTSCSVPQSKQ 2002
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGH 233
TC T WRG SCL S M F S Q Q KISLQQGALM+HLLL*CGH
Sbjct: 2001 ITCSTWWRGISCLCF*STFMLFFAS**Q*WQPKISLQQGALMQHLLL*CGH 1849
Score = 120 bits (257), Expect = 3e-026
Identities = 56/111 (50%), Positives = 72/111 (64%)
Frame = -1 / -2
Query: 566 TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ*A 387
TV+ I +SDS ST +AV+L FR II+ E A TEVLPHA++ +DT L+HLLFS T+*
Sbjct: 2182 TVKEIFTSSDSANSTPIAVVLFFRRIIIVELADFTEVLPHAHSTVDTNLAHLLFSTTK*T 2003
Query: 386 YNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWT 234
NL + +A MPL I +L I+ V A K+ I ARSS A S+MWT
Sbjct: 2002 NNLFNLVARNIMPLLLIYIYVVLRLIMTVMATKDLITARSSNATPSSVMWT 1850
Score = 29.0 bits (57), Expect(2) = 1e-057
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 554 FLPLFKSGCCYSIALK 601
F +K GCCYSI LK
Sbjct: 2171 FFHCYKCGCCYSILLK 2218
>gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ138c08F 3', mRNA sequence
Length = 594
Score = 220 bits (474), Expect = 4e-056
Identities = 73/103 (70%), Positives = 91/103 (88%)
Frame = +3 / -3
Query: 210 EKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVC 389
++G+M YGCPHYRRRC IRAPCCNEIF C HCH E KN+I +D+ +RH++PRH+V+QV+C
Sbjct: 325 DRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVIC 146
Query: 390 SLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
LCGTEQEV Q+CI+CGVCMGKYFC +CKL+DDD SK+QYHC+
Sbjct: 145 LLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCD 17
Score = 129 bits (277), Expect = 6e-029
Identities = 62/102 (60%), Positives = 66/102 (64%)
Frame = -2 / +3
Query: 514 Q*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILS 335
Q YC L+ SSS SL QKYFPM TPQ I TSCSVP ++ TC T WRG SCL S
Sbjct: 21 QWYCFLDVSSS*SLQTLQKYFPMHTPQWIQIWPTSCSVPQSKQITCSTWWRGISCLCF*S 200
Query: 334 ILMEFLVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
M F S Q Q KISLQQGALM+HLLL*CGHP I P S
Sbjct: 201 TFMLFFAS**Q*WQPKISLQQGALMQHLLL*CGHPYSISPLS 326
Score = 115 bits (245), Expect = 2e-024
Identities = 52/102 (50%), Positives = 67/102 (65%)
Frame = -1 / +2
Query: 527 STSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ*AYNLLHFMAWKFMP 348
ST +AV+L FR II+ E A TEVLPHA++ +DT L+HLLFS T+* NL + +A MP
Sbjct: 8 STPIAVVLFFRRIIIVELADFTEVLPHAHSTVDTNLAHLLFSTTK*TNNLFNLVARNIMP 187
Query: 347 LHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIMWTPIVH 222
L I +L I+ V A K+ I ARSS A S+MWT I+H
Sbjct: 188 LLLIYIYVVLRLIMTVMATKDLITARSSNATPSSVMWTSILH 313
>emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2640
Score = 205 bits (443), Expect(2) = 5e-054
Identities = 73/124 (58%), Positives = 90/124 (72%)
Frame = +3 / +3
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQ 380
E ++ G Y RRC IRAPCCNEIF C HCH E KN+I +D+ +RH++PRH+V+Q
Sbjct: 1620 ESLTNKVLDRGLMEYGRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQ 1799
Query: 381 VVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXXXXXXXXXENSF 560
V+C LCGTEQEV Q+CI+CGVCMGKYFC +CKL+DDD SK+QYHC+ EN F
Sbjct: 1800 VICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENLF 1979
Query: 561 HCSK 572
HC K
Sbjct: 1980 HCYK 1991
Score = 112 bits (239), Expect = 1e-023
Identities = 54/109 (49%), Positives = 70/109 (64%)
Frame = -1 / -2
Query: 566 TVEGILPASDSTYSTSVAVILLFRDIIVEEFAQTTEVLPHANTAIDTYLSHLLFSATQ*A 387
TV+ I +SDS ST +AV+L FR II+ E A TEVLPHA++ +DT L+HLLFS T+*
Sbjct: 1985 TVKEIFTSSDSANSTPIAVVLFFRRIIIVELADFTEVLPHAHSTVDTNLAHLLFSTTK*T 1806
Query: 386 YNLLHFMAWKFMPLHFINFNGILSFIVAVSAIKNFIAARSSYAASPSIM 240
NL + +A MPL I +L I+ V A K+ I ARSS A SI+
Sbjct: 1805 NNLFNLVARNIMPLLLIYIYVVLRLIMTVMATKDLITARSSNATPSSIL 1659
Score = 111 bits (236), Expect = 3e-023
Identities = 57/106 (53%), Positives = 61/106 (57%)
Frame = -2 / -3
Query: 565 QWKEFSXXXXXXXXXXLQ*YCCLETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEH 386
Q K FS Q YC L+ SSS SL QKYFPM TPQ I TSCSVP ++
Sbjct: 1984 Q*KRFSRPPILQIPHPSQWYCFLDVSSS*SLQTLQKYFPMHTPQWIQIWPTSCSVPQSKQ 1805
Query: 385 TTCCTSWRGSSCLFILSILMEFLVSLWQCRQSKISLQQGALMRHLL 248
TC T WRG SCL S M F S Q Q KISLQQGALM+HLL
Sbjct: 1804 ITCSTWWRGISCLCF*STFMLFFAS**Q*WQPKISLQQGALMQHLL 1667
Score = 27.6 bits (54), Expect(2) = 5e-054
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 566 FKSGCCYSIALK 601
+K GCCYSI LK
Sbjct: 1986 YKCGCCYSILLK 2021
>gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-09-P06 5',
mRNA sequence
Length = 632
Score = 202 bits (435), Expect = 1e-050
Identities = 73/109 (66%), Positives = 86/109 (78%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 175 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 354
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQ 503
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC CK FDDD+SK+
Sbjct: 355 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKK 501
Score = 134 bits (287), Expect = 2e-030
Identities = 63/97 (64%), Positives = 67/97 (69%)
Frame = -2 / -1
Query: 499 LETSSSKSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEF 320
LE SSSK+LH QKYFP+ TPQL C TSCSV +EH T TS RGSSCL SI E
Sbjct: 497 LERSSSKNLHFEQKYFPIHTPQLEQFC*TSCSVSQSEHMTFETSCRGSSCL*CCSI*RES 318
Query: 319 LVSLWQCRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
L SLWQC QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 317 LASLWQCLQSKISSQHGALILHRLL*CEHP*CPDPIS 207
>gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C069Q 5-PRIME, mRNA sequence
Length = 473
Score = 184 bits (397), Expect(2) = 2e-048
Identities = 66/101 (65%), Positives = 79/101 (78%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 133 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 312
Query: 357 LPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKL 479
LPRHEV +V+CSLC TEQ+V+Q C NCGVCMGKYFC C++
Sbjct: 313 LPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCQV 435
Score = 121 bits (258), Expect(2) = 1e-027
Identities = 56/91 (61%), Positives = 61/91 (67%)
Frame = -2 / -1
Query: 481 KSLHKPQKYFPMQTPQLIHTCRTSCSVPHNEHTTCCTSWRGSSCLFILSILMEFLVSLWQ 302
++ H QKYFP+ TPQL C TSCSV +EH T TS RGSSCL SI E L SLWQ
Sbjct: 437 RTWHFEQKYFPIHTPQLEQFC*TSCSVSQSEHMTFETSCRGSSCL*CCSI*RESLASLWQ 258
Query: 301 CRQSKISLQQGALMRHLLL*CGHP*CIIPFS 209
C QSKIS Q GAL+ H LL*C HP*C P S
Sbjct: 257 CLQSKISSQHGALILHRLL*CEHP*CPDPIS 165
Score = 30.4 bits (60), Expect(2) = 2e-048
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3 / +2
Query: 474 KLFDDDVSKQQYH 512
K FDDD+SK+QYH
Sbjct: 431 KFFDDDLSKKQYH 469
Score = 24.0 bits (46), Expect(2) = 1e-027
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 514 Q*YCCLETSSSKSL 473
+*YC LE SSSK+L
Sbjct: 471 K*YCFLERSSSKNL 430
>ref|NM_121870.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT5G18650 mRNA, complete cds
Length = 1480
Score = 111 bits (238), Expect(2) = 2e-043
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 511 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 690
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 691 ICRVGGRENFFHCKK 735
Score = 85.8 bits (181), Expect(2) = 2e-043
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 367 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 498
>gb|AY064060.1| Arabidopsis thaliana unknown protein (At5g18650) mRNA, complete cds
Length = 1470
Score = 111 bits (238), Expect(2) = 2e-043
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 502 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 681
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 682 ICRVGGRENFFHCKK 726
Score = 85.8 bits (181), Expect(2) = 2e-043
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 358 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 489
>emb|BX829794.1|CNS0A03H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB37ZF09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1413
Score = 111 bits (238), Expect(2) = 2e-043
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +2
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 488 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 667
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 668 ICRVGGRENFFHCKK 712
Score = 85.8 bits (181), Expect(2) = 2e-043
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 344 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 475
>gb|AY096370.1| Arabidopsis thaliana unknown protein (At5g18650) mRNA, complete cds
Length = 835
Score = 111 bits (238), Expect(2) = 2e-043
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 163 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 342
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 343 ICRVGGRENFFHCKK 387
Score = 85.8 bits (181), Expect(2) = 2e-043
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 19 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 150
>emb|CQ803772.1| Sequence 183 from Patent WO2004035798
Length = 804
Score = 111 bits (238), Expect(2) = 2e-043
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 163 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 342
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 343 ICRVGGRENFFHCKK 387
Score = 85.8 bits (181), Expect(2) = 2e-043
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 19 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 150
>ref|NM_116162.4| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT3G62970 mRNA, complete cds
Length = 1088
Score = 116 bits (248), Expect(2) = 6e-043
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 204 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 383
Query: 516 NXXXXXXXXXXENSFHC 566
+ + FHC
Sbjct: 384 DDCGICRVGGRDKFFHC 434
Score = 79.9 bits (168), Expect(2) = 6e-043
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +3
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 87 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 200
>emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL52ZF09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 947
Score = 116 bits (248), Expect(2) = 6e-043
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 173 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 352
Query: 516 NXXXXXXXXXXENSFHC 566
+ + FHC
Sbjct: 353 DDCGICRVGGRDKFFHC 403
Score = 79.9 bits (168), Expect(2) = 6e-043
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +2
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 56 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 169
>gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complete cds
Length = 831
Score = 116 bits (248), Expect(2) = 6e-043
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 169 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 348
Query: 516 NXXXXXXXXXXENSFHC 566
+ + FHC
Sbjct: 349 DDCGICRVGGRDKFFHC 399
Score = 79.9 bits (168), Expect(2) = 6e-043
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 52 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 165
>gb|BP562733.1|BP562733 BP562733 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-39-O20 5',
mRNA sequence
Length = 662
Score = 116 bits (248), Expect(2) = 6e-043
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 210 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 389
Query: 516 NXXXXXXXXXXENSFHC 566
+ + FHC
Sbjct: 390 DDCGICRVGGRDKFFHC 440
Score = 79.9 bits (168), Expect(2) = 6e-043
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +3
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 93 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 206
>gb|BP798029.1|BP798029 BP798029 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-L17 5',
mRNA sequence
Length = 391
Score = 111 bits (237), Expect(2) = 2e-041
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 204 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 383
Query: 516 N 518
+
Sbjct: 384 D 386
Score = 79.9 bits (168), Expect(2) = 2e-041
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +3
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 87 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 200
>gb|BP823729.1|BP823729 BP823729 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-F23 5',
mRNA sequence
Length = 392
Score = 111 bits (237), Expect(2) = 2e-041
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = +3 / +3
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHC 515
D +RH+L R V+QVVCS+C TEQEV +VC NCGV MG+YFC +CK FDDD+SK+Q+HC
Sbjct: 186 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHC 365
Query: 516 N 518
+
Sbjct: 366 D 368
Score = 79.9 bits (168), Expect(2) = 2e-041
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +3
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 69 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 182
>emb|BX830637.1|CNS0A048 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZF05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1393
Score = 103 bits (219), Expect(2) = 1e-040
Identities = 38/75 (50%), Positives = 47/75 (62%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
R +L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD QQ HC+
Sbjct: 490 RDDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTETQQLHCDDCG 669
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 670 ICRVGGRENLFHCKK 714
Score = 85.8 bits (181), Expect(2) = 1e-040
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 346 DRLHFGKMGFGCEHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 477
>gb|CA781795.1|CA781795 050D05AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 693
Score = 111 bits (238), Expect(2) = 5e-040
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 106 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 285
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 286 ICRVGGRENFFHCKK 330
Score = 74.8 bits (157), Expect(2) = 5e-040
Identities = 22/31 (70%), Positives = 30/31 (96%)
Frame = +3 / +1
Query: 240 HYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 1 HYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 93
>emb|BX841616.1|CNS09YKN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB20ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1154
Score = 111 bits (238), Expect(3) = 6e-038
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3 / +3
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCNXXX 527
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 477 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCG 656
Query: 528 XXXXXXXENSFHCSK 572
EN FHC K
Sbjct: 657 ICRVGGRENFFHCKK 701
Score = 57.4 bits (119), Expect(3) = 6e-038
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3 / +2
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIF 290
++ G M +GC HY+RRC+IRAPCCNE+F
Sbjct: 332 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVF 421
Score = 28.6 bits (56), Expect(3) = 6e-038
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +3 / +3
Query: 294 CRHCHNETKNSIK 332
CRHCHNE+ ++++
Sbjct: 426 CRHCHNESTSTLR 464
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 72.5 bits (152), Expect(4) = 5e-036
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3 / +3
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNETK 320
CPHYRRRC IRAPCCNEIF C HCH E K
Sbjct: 57537 CPHYRRRCCIRAPCCNEIFGCHHCHYEAK 57623
Score = 66.1 bits (138), Expect(4) = 5e-036
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +3 / +2
Query: 411 EVRQVCINCGVCMGKYFCGLCKLFDDDVS 497
+V Q+CI+CGVCMGKYFC +CKL+DDDVS
Sbjct: 58010 QVGQICIHCGVCMGKYFCKVCKLYDDDVS 58096
Score = 37.7 bits (76), Expect(4) = 5e-036
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = +3 / +1
Query: 318 KNSIKIDKMKRHELPRHEVQQV 383
+N+I +D+ +RH++PRH+V+QV
Sbjct: 57724 QNNINVDQKQRHDIPRHQVEQV 57789
Score = 32.2 bits (64), Expect(4) = 5e-036
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 360 PRHEVQQVVCSLCGTEQEV 416
P QV+C LCGTEQEV
Sbjct: 57854 PLSSSSQVICLLCGTEQEV 57910
>gb|Z37684.1|Z37684 ATTS4149 Versailles-VB Arabidopsis thaliana cDNA clone VBVJH04,
mRNA sequence
Length = 405
Score = 100 bits (213), Expect(3) = 7e-035
Identities = 34/57 (59%), Positives = 44/57 (77%)
Frame = +3 / +3
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQYHCN 518
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +C +DDD KQQ+HC+
Sbjct: 129 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCD 299
Score = 52.8 bits (109), Expect(3) = 7e-035
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNE 284
G M +GC HY+RRC+IRAPCCNE
Sbjct: 1 GKMGFGCKHYKRRCQIRAPCCNE 69
Score = 34.1 bits (68), Expect(3) = 7e-035
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 288 FDCRHCHNETKNSIK 332
FDCRHCHNE+ ++++
Sbjct: 72 FDCRHCHNESTSTLR 116
>gb|BP833602.1|BP833602 BP833602 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-96-M12 5',
mRNA sequence
Length = 375
Score = 74.8 bits (157), Expect(3) = 4e-033
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3 / +2
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC H +RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 71 GKFQFGCEH*KRRCKIRAPCCNLIFSCRHCHNDSANSL 184
Score = 71.2 bits (149), Expect(3) = 4e-033
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCK 476
D +RH+L R V+QVV S+C TEQEV +VC NCGV MG+YF +CK
Sbjct: 188 DPKERHDLVRQNVKQVVGSICQTEQEVAKVCSNCGVNMGEYFRDICK 328
Score = 34.5 bits (69), Expect(3) = 4e-033
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3 / +1
Query: 450 GKYFCGLCKLFDDDVSKQQYHCN 518
G+ ++FDDD+SK+Q+HC+
Sbjct: 301 GRILSRYLQIFDDDISKEQFHCD 369
>gb|BP824281.1|BP824281 BP824281 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-09-B04 5',
mRNA sequence
Length = 403
Score = 85.8 bits (181), Expect(2) = 3e-031
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 136 DRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 267
Score = 71.6 bits (150), Expect(2) = 3e-031
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGL 470
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+YFC +
Sbjct: 280 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSI 402
>gb|BP813040.1|BP813040 BP813040 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-05-D11 5',
mRNA sequence
Length = 408
Score = 95.0 bits (201), Expect(3) = 6e-031
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +3 / +2
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGKYFCGLCKLFDDDVSKQQY 509
D +RH+L R V+QVVCS+C TEQEV +VC N GV MG+YFC +CK DDD+SK+Q+
Sbjct: 188 DPKERHDLVRQNVKQVVCSICKTEQEVAKVCSNGGVNMGEYFCDICKFLDDDISKEQF 361
Score = 41.4 bits (84), Expect(3) = 6e-031
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3 / +2
Query: 228 YGCPHYRRRCRIRAPC 275
+GC HY+RRC+IRAPC
Sbjct: 83 FGCEHYKRRCKIRAPC 130
Score = 37.7 bits (76), Expect(3) = 6e-031
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3 / +3
Query: 276 CNEIFDCRHCHNETKNSIKIDK 341
CN IF CRHCHN++ N I K
Sbjct: 132 CNLIFSCRHCHNDSANLFLILK 197
>gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-58-P07 5',
mRNA sequence
Length = 394
Score = 131 bits (280), Expect = 2e-029
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGCPHYRRRC+IRAPCC+EI DCRHCHNE K+S+ I++ RHE
Sbjct: 167 NEQNQEFANLMEIGSGHYGCPHYRRRCKIRAPCCDEILDCRHCHNEAKDSLHIEQHHRHE 346
Query: 357 LPRHEVQQVVCSL 395
LPRHEV +V+CSL
Sbjct: 347 LPRHEVSKVICSL 385
>gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-76-D20 5',
mRNA sequence
Length = 391
Score = 131 bits (280), Expect = 2e-029
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 172 NEQNQEFANLMEMGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 351
Query: 357 LPRHEVQQVVCSL 395
LPRHEV +V+CSL
Sbjct: 352 LPRHEVSKVICSL 390
>gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-47-D07 5',
mRNA sequence
Length = 390
Score = 128 bits (275), Expect = 1e-028
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 172 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 351
Query: 357 LPRHEVQQVVCSL 395
LPRHEV +V+CS+
Sbjct: 352 LPRHEVSKVICSV 390
>gb|BP821006.1|BP821006 BP821006 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-56-H12 5',
mRNA sequence
Length = 389
Score = 86.3 bits (182), Expect(2) = 3e-028
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3 / +1
Query: 201 EKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIK 332
++ G M +GC HY+RRC+IRAPCCNE+FDCRHCHNE+ ++++
Sbjct: 136 DRLHLGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLR 267
Score = 60.6 bits (126), Expect(2) = 3e-028
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +3 / +1
Query: 348 RHELPRHEVQQVVCSLCGTEQEVRQVCINCGVCMGK 455
RH+L R +V+QV+CS+C TEQ QVC NCGV MG+
Sbjct: 280 RHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGE 387
>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
Length = 86065
Score = 78.5 bits (165), Expect(4) = 4e-028
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +3 / +2
Query: 228 YGCPHYRRRCRIRAPCCNEIFDCRHCHNETK 320
+ C HYRRRC+IRAPCC+EIFDCRHCHNE K
Sbjct: 59795 FRCSHYRRRCKIRAPCCDEIFDCRHCHNEAK 59887
Score = 63.4 bits (132), Expect(4) = 4e-028
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3 / +2
Query: 411 EVRQVCINCGVCMGKYFCGLCKLFDDDVS 497
+V+Q C NCGVCMGKYFC CK FDDDVS
Sbjct: 60275 QVQQNCSNCGVCMGKYFCSKCKFFDDDVS 60361
Score = 33.6 bits (67), Expect(4) = 4e-028
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3 / +3
Query: 318 KNSIKIDKMKRHELPRHEVQQV 383
++S+ I++ RHELPRHEV +V
Sbjct: 60012 QDSLHIEQHHRHELPRHEVSKV 60077
Score = 29.0 bits (57), Expect(4) = 4e-028
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 378 QVVCSLCGTEQEV 416
QV+CSLC TEQ+V
Sbjct: 60157 QVICSLCETEQDV 60195
>gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-83-J17 5',
mRNA sequence
Length = 385
Score = 122 bits (262), Expect = 7e-027
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 170 NEQNQEFGNLMEMGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 349
Query: 357 LPRHEVQQVV 386
LPRHEV +V+
Sbjct: 350 LPRHEVSKVI 379
>gb|T04243.1|T04243 290 Lambda-PRL2 Arabidopsis thaliana cDNA clone 34B5T7, mRNA
sequence
Length = 400
Score = 120 bits (256), Expect = 5e-026
Identities = 44/80 (55%), Positives = 53/80 (66%)
Frame = +3 / +3
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCH K S+ I++ RH
Sbjct: 159 NEQNQEFANLMEIGSXHYGCSHYRRRCKIRAPCCDEIFDCRHCHXAAKXSLHIEQHHRHX 338
Query: 357 LPRHEVQQVVCSLCGTEQEV 416
L RHEV + +CSLC +V
Sbjct: 339 LXRHEVSKXICSLCEXXXDV 398
>gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-L05 5',
mRNA sequence
Length = 385
Score = 119 bits (255), Expect = 6e-026
Identities = 43/69 (62%), Positives = 52/69 (75%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ +++ RHE
Sbjct: 179 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHMEQHHRHE 358
Query: 357 LPRHEVQQV 383
LPRHEV +V
Sbjct: 359 LPRHEVSKV 385
>gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-19-C05 5',
mRNA sequence
Length = 376
Score = 119 bits (254), Expect = 9e-026
Identities = 43/68 (63%), Positives = 51/68 (75%)
Frame = +3 / +3
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 171 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 350
Query: 357 LPRHEVQQ 380
LPRHEV +
Sbjct: 351 LPRHEVSK 374
>gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-51-O18 5',
mRNA sequence
Length = 392
Score = 117 bits (251), Expect = 2e-025
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +3 / +3
Query: 240 HYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHELPRHEVQQVVCSLC 398
HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHELPRHEV +V+CSLC
Sbjct: 234 HYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHELPRHEVSKVICSLC 392
>gb|AV550477.1|AV550477 AV550477 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ113a05R 5', mRNA sequence
Length = 255
Score = 79.9 bits (168), Expect(2) = 2e-025
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3 / +1
Query: 216 GIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSI 329
G +GC HY+RRC+IRAPCCN IF CRHCHN++ NS+
Sbjct: 37 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSL 150
Score = 56.5 bits (117), Expect(2) = 2e-025
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3 / +1
Query: 336 DKMKRHELPRHEVQQVVCSLCGTEQEVRQVCINC 437
D +RH+L R V+QVVCS+C TEQEV +VC NC
Sbjct: 154 DPKERHDLVRQNVKQVVCSICQTEQEVAKVCSNC 255
>gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-F13 5',
mRNA sequence
Length = 366
Score = 116 bits (249), Expect = 4e-025
Identities = 42/65 (64%), Positives = 49/65 (75%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 170 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 349
Query: 357 LPRHE 371
LPRHE
Sbjct: 350 LPRHE 364
>gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-K13 5',
mRNA sequence
Length = 387
Score = 116 bits (249), Expect = 4e-025
Identities = 43/68 (63%), Positives = 51/68 (75%)
Frame = +3 / +2
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPC +EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 173 NEQNQEFANLMEMGSGHYGCSHYRRRCKIRAPCGDEIFDCRHCHNEAKDSLHIEQHHRHE 352
Query: 357 LPRHEVQQ 380
LPRHEVQ+
Sbjct: 353 LPRHEVQR 376
>gb|BP853213.1|BP853213 BP853213 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-22-I20 5',
mRNA sequence
Length = 376
Score = 112 bits (240), Expect = 8e-024
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +3 / +3
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPC +EI D RHCHNE K+S+ I++ RHE
Sbjct: 162 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCGDEILDGRHCHNEAKDSLHIEQHHRHE 341
Query: 357 LPRHEVQQVVC 389
LPRHEV +V+C
Sbjct: 342 LPRHEVSKVIC 374
>gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thaliana cDNA clone VBVXG10,
mRNA sequence
Length = 410
Score = 88.6 bits (187), Expect(2) = 2e-023
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNS 326
N N + E G HYG HYRRRC+IRAPCC+EIFDCRHCHNE K+S
Sbjct: 136 NEQNQEFXNLMEIGSGHYGFSHYRRRCKIRAPCCDEIFDCRHCHNEAKDS 285
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3 / +2
Query: 333 IDKMKRHELPRHEVQQVVCSLC 398
I + RHELPRHEV +V+CSLC
Sbjct: 293 IXQHHRHELPRHEVSKVICSLC 358
>gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-M23 5',
mRNA sequence
Length = 388
Score = 107 bits (228), Expect(2) = 2e-023
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = +3 / +3
Query: 210 EKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHEL 359
E G HYGCPHYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHEL
Sbjct: 204 EIGSGHYGCPHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHEL 353
Score = 23.1 bits (44), Expect(2) = 2e-023
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3 / +2
Query: 363 RHEVQQVVCSL 395
RHEV +V+CS+
Sbjct: 356 RHEVSKVICSV 388
>emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20O10
Length = 83122
Score = 69.3 bits (145), Expect(3) = 1e-021
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3 / +2
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNET 317
C HY+RRC+IRAPCCN IF CRHCHN++
Sbjct: 13709 CEHYKRRCKIRAPCCNLIFSCRHCHNDS 13792
Score = 57.0 bits (118), Expect(3) = 1e-021
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3 / +2
Query: 414 VRQVCINCGVCMGKYFCGLCKLFDDDVS 497
V +VC NCGV MG+YFC +CK FDDDVS
Sbjct: 14138 VAKVCSNCGVNMGEYFCDICKFFDDDVS 14221
Score = 32.2 bits (64), Expect(3) = 1e-021
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 378 QVVCSLCGTEQEVR 419
QVVCS+C TEQEVR
Sbjct: 14018 QVVCSICQTEQEVR 14059
>emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
429B01, genomic survey sequence
Length = 876
Score = 72.5 bits (152), Expect(3) = 1e-021
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3 / -2
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNETK 320
CPHYRRRC IRAPCCNEIF C HCH E K
Sbjct: 413 CPHYRRRCCIRAPCCNEIFGCHHCHYEAK 327
Score = 37.7 bits (76), Expect(3) = 1e-021
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = +3 / -3
Query: 318 KNSIKIDKMKRHELPRHEVQQV 383
+N+I +D+ +RH++PRH+V+QV
Sbjct: 226 QNNINVDQKQRHDIPRHQVEQV 161
Score = 32.2 bits (64), Expect(3) = 1e-021
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 360 PRHEVQQVVCSLCGTEQEV 416
P QV+C LCGTEQEV
Sbjct: 96 PLSSSSQVICLLCGTEQEV 40
>gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-H23 5',
mRNA sequence
Length = 352
Score = 103 bits (220), Expect = 4e-021
Identities = 37/60 (61%), Positives = 44/60 (73%)
Frame = +3 / +1
Query: 177 NGSNPDDYEKFEKGIMHYGCPHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDKMKRHE 356
N N + E G HYGC HYRRRC+IRAPCC+EIFDCRHCHNE K+S+ I++ RHE
Sbjct: 172 NEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHE 351
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V,
complete sequence
Length = 85746
Score = 76.2 bits (160), Expect(3) = 5e-021
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +3 / -1
Query: 234 CPHYRRRCRIRAPCCNEIFDCRHCHNET 317
C HY+RRC+IRAPCCNE+FDCRHCHNE+
Sbjct: 43692 CKHYKRRCQIRAPCCNEVFDCRHCHNES 43609
Score = 51.5 bits (106), Expect(3) = 5e-021
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3 / -2
Query: 411 EVRQVCINCGVCMGKYFCGLCKLFDDDV 494
+ QVC NCGV MG+YFC +C +DDDV
Sbjct: 43229 QAAQVCSNCGVNMGEYFCSICIFYDDDV 43146
Score = 28.6 bits (56), Expect(3) = 5e-021
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3 / -1
Query: 372 VQQVVCSLCGTEQEVRQVCI 431
V QV+CS+C TEQ V + I
Sbjct: 43377 VLQVICSVCDTEQPVIPITI 43318
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,279,643,417
Number of Sequences: 1013581
Number of extensions: 19361282
Number of successful extensions: 212954
Number of sequences better than 1.0e-020: 53
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 35848833575
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)