TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 149 3e-042
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 149 3e-042
emb|AX505737.1| Sequence 432 from Patent WO0216655 149 4e-042
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 150 2e-041
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 150 2e-041
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 150 2e-041
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 150 2e-041
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 150 2e-041
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 150 2e-041
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 150 2e-041
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 150 2e-041
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 150 2e-041
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 150 2e-041
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 150 2e-041
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 112 1e-037
gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC ... 75 2e-037
gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis tha... 75 2e-037
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 149 5e-035
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 146 5e-034
gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots ... 122 6e-033
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 93 4e-032
gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Siliqu... 138 1e-031
emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cD... 138 1e-031
ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G2... 138 1e-031
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 93 7e-030
gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveg... 110 2e-029
gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BA... 112 6e-027
ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1... 112 6e-027
gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds 112 6e-027
gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green ... 112 6e-027
gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots ... 100 1e-026
gb|AY600524.1| Arabidopsis thaliana hypothetical protein (A... 97 2e-025
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 112 8e-024
gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower... 91 9e-024
gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower... 91 9e-024
gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green ... 91 9e-024
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 108 2e-022
gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana ... 87 2e-022
gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K... 65 2e-022
gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2... 65 2e-022
emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequenc... 75 3e-021
emb|AJ522260.1|ATH522260 Arabidopsis thaliana T-DNA flankin... 65 9e-021
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 149 bits (321), Expect(2) = 3e-042
Identities = 59/87 (67%), Positives = 64/87 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2733 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIV 2912
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTS 371
RFY+EPE++ + S
Sbjct: 2913 PPAYYAHLAAFRARFYLEPEIMQDNGS 2993
Score = 104 bits (222), Expect(2) = 4e-027
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = +3 / -3
Query: 390 ISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE*AG 569
ISGS + A*YAGGT +T+RVHRA*V*QRL I SAVKLFSSQRTW AG
Sbjct: 2974 ISGSR*KRARNAAR*A*YAGGTIETDRVHRA*V*QRLLVRD*IPSAVKLFSSQRTW*CAG 2795
Query: 570 LLVPWIPA*LQR*KSNSVG 626
LLVP IPA LQR*KSNSVG
Sbjct: 2794 LLVP*IPAWLQR*KSNSVG 2738
Score = 44.1 bits (90), Expect(2) = 3e-042
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V VKPLPA+KE VKR+MFYC*+
Sbjct: 3033 VGVKPLPALKENVKRVMFYC*K 3098
Score = 38.6 bits (78), Expect(2) = 4e-027
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTET 347
Q*NI LFTFSF AG+GFT T
Sbjct: 3091 Q*NITLFTFSFKAGKGFTPT 3032
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 149 bits (321), Expect(2) = 3e-042
Identities = 59/87 (67%), Positives = 64/87 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2733 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIV 2912
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTS 371
RFY+EPE++ + S
Sbjct: 2913 PPAYYAHLAAFRARFYLEPEIMQDNGS 2993
Score = 104 bits (222), Expect(2) = 4e-027
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = +3 / -2
Query: 390 ISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE*AG 569
ISGS + A*YAGGT +T+RVHRA*V*QRL I SAVKLFSSQRTW AG
Sbjct: 2974 ISGSR*KRARNAAR*A*YAGGTIETDRVHRA*V*QRLLVRD*IPSAVKLFSSQRTW*CAG 2795
Query: 570 LLVPWIPA*LQR*KSNSVG 626
LLVP IPA LQR*KSNSVG
Sbjct: 2794 LLVP*IPAWLQR*KSNSVG 2738
Score = 44.1 bits (90), Expect(2) = 3e-042
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V VKPLPA+KE VKR+MFYC*+
Sbjct: 3033 VGVKPLPALKENVKRVMFYC*K 3098
Score = 38.6 bits (78), Expect(2) = 4e-027
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTET 347
Q*NI LFTFSF AG+GFT T
Sbjct: 3091 Q*NITLFTFSFKAGKGFTPT 3032
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 149 bits (321), Expect(2) = 4e-042
Identities = 59/87 (67%), Positives = 64/87 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2605 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIV 2784
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTS 371
RFY+EPE++ + S
Sbjct: 2785 PPAYYAHLAAFRARFYLEPEIMQDNGS 2865
Score = 104 bits (222), Expect(2) = 4e-027
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = +3 / -2
Query: 390 ISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE*AG 569
ISGS + A*YAGGT +T+RVHRA*V*QRL I SAVKLFSSQRTW AG
Sbjct: 2846 ISGSR*KRARNAAR*A*YAGGTIETDRVHRA*V*QRLLVRD*IPSAVKLFSSQRTW*CAG 2667
Query: 570 LLVPWIPA*LQR*KSNSVG 626
LLVP IPA LQR*KSNSVG
Sbjct: 2666 LLVP*IPAWLQR*KSNSVG 2610
Score = 43.7 bits (89), Expect(2) = 4e-042
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -1 / +1
Query: 346 VSVKPLPAVKEKVKRMMFYC* 284
V VKPLPA+KE VKR+MFYC*
Sbjct: 2905 VGVKPLPALKENVKRVMFYC* 2967
Score = 38.6 bits (78), Expect(2) = 4e-027
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTET 347
Q*NI LFTFSF AG+GFT T
Sbjct: 2963 Q*NITLFTFSFKAGKGFTPT 2904
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2913 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 3092
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 3093 PPAYYAHLAAFRARFYMEPETSDS 3164
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 3163 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2984
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2983 *AGREVP*IPA*LQR*KSNSVGW 2915
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 3243 AVRPLPALKENVKRVMFYC* 3302
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -3
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 3319 IEGESTQQ*NMTRFTFSFRAGSGLT 3245
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2907 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 3086
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 3087 PPAYYAHLAAFRARFYMEPETSDS 3158
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 3157 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2978
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2977 *AGREVP*IPA*LQR*KSNSVGW 2909
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 3237 AVRPLPALKENVKRVMFYC* 3296
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -3
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 3313 IEGESTQQ*NMTRFTFSFRAGSGLT 3239
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2884 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 3063
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 3064 PPAYYAHLAAFRARFYMEPETSDS 3135
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 3134 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2955
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2954 *AGREVP*IPA*LQR*KSNSVGW 2886
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 3214 AVRPLPALKENVKRVMFYC* 3273
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -1
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 3290 IEGESTQQ*NMTRFTFSFRAGSGLT 3216
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2634 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 2813
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 2814 PPAYYAHLAALRARFYMEPETSDS 2885
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 2884 LSDVSGSM*NRALRAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2705
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2704 *AGREVP*IPA*LQR*KSNSVGW 2636
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 2964 AVRPLPALKENVKRVMFYC* 3023
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -2
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 3040 IEGESTQQ*NMTRFTFSFRAGSGLT 2966
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2758 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 2937
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 2938 PPAYYAHLAAFRARFYMEPETSDS 3009
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 3008 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2829
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2828 *AGREVP*IPA*LQR*KSNSVGW 2760
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 3088 AVRPLPALKENVKRVMFYC* 3147
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -2
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 3164 IEGESTQQ*NMTRFTFSFRAGSGLT 3090
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 2156 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 2335
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 2336 PPAYYAHLAAFRARFYMEPETSDS 2407
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 2406 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 2227
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 2226 *AGREVP*IPA*LQR*KSNSVGW 2158
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 2486 AVRPLPALKENVKRVMFYC* 2545
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -2
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 2562 IEGESTQQ*NMTRFTFSFRAGSGLT 2488
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 240 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 419
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 420 PPAYYAHLAAFRARFYMEPETSDS 491
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 490 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 311
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 310 *AGREVP*IPA*LQR*KSNSVGW 242
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 570 AVRPLPALKENVKRVMFYC* 629
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / -1
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 646 IEGESTQQ*NMTRFTFSFRAGSGLT 572
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 163 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 342
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 343 PPAYYAHLAAFRARFYMEPETSDS 414
Score = 110 bits (234), Expect(2) = 1e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 413 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 234
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 233 *AGREVP*IPA*LQR*KSNSVGW 165
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 493 AVRPLPALKENVKRVMFYC* 552
Score = 35.4 bits (71), Expect(2) = 1e-027
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3 / -1
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*NI FTFSF AG G T
Sbjct: 569 IEGESIQQ*NITRFTFSFRAGSGLT 495
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / -2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 507 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 328
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 327 PPAYYAHLAAFRARFYMEPETSDS 256
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / +2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 257 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 436
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 437 *AGREVP*IPA*LQR*KSNSVGW 505
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 177 AVRPLPALKENVKRVMFYC* 118
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +2
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 101 IEGESTQQ*NMTRFTFSFRAGSGLT 175
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / -3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 518 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 339
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 338 PPAYYAHLAAFRARFYMEPETSDS 267
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / +1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 268 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 447
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 448 *AGREVP*IPA*LQR*KSNSVGW 516
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 188 AVRPLPALKENVKRVMFYC* 129
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +1
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 112 IEGESTQQ*NMTRFTFSFRAGSGLT 186
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 60/84 (71%), Positives = 62/84 (73%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 518 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 339
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 338 PPAYYAHLAAFRARFYMEPETSDS 267
Score = 110 bits (234), Expect(2) = 2e-027
Identities = 55/83 (66%), Positives = 60/83 (72%)
Frame = +3 / +1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 268 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 447
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSVGW
Sbjct: 448 *AGREVP*IPA*LQR*KSNSVGW 516
Score = 40.9 bits (83), Expect(2) = 2e-041
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 188 AVRPLPALKENVKRVMFYC* 129
Score = 34.1 bits (68), Expect(2) = 2e-027
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +1
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 112 IEGESTQQ*NMTRFTFSFRAGSGLT 186
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 112 bits (240), Expect(2) = 5e-027
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / -3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 10344114 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 10343935
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 10343934 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 10343830
Score = 74.8 bits (157), Expect(5) = 1e-037
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -1 / -1
Query: 583 QGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
QGTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 2246093 QGTSRPAHYHVLWDENNFTADGLQSLTNNLCYT 2245995
Score = 50.1 bits (103), Expect(5) = 1e-037
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 2246219 CHPTEFDFYLCSHAGIQ 2246169
Score = 40.9 bits (83), Expect(5) = 1e-037
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 2245606 AVRPLPALKENVKRVMFYC* 2245547
Score = 39.6 bits (80), Expect(5) = 1e-037
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3 / -1
Query: 467 LGLCCPSCILRTLGSIAGSVLHGTRDVGQ 381
LG C CIL T S GS+LHG RD+ Q
Sbjct: 2245772 LGYCSSPCILCTSSSF*GSILHGARDIRQ 2245686
Score = 29.9 bits (59), Expect(2) = 5e-027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP + + VK +MFYC*
Sbjct: 10343811 PLPKLSDNVKNLMFYC* 10343761
Score = 25.4 bits (49), Expect(5) = 1e-037
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 490 YTYARCTRSV 461
Y YARCTRSV
Sbjct: 2245899 YRYARCTRSV 2245870
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
sequence
Length = 102078
Score = 74.8 bits (157), Expect(5) = 2e-037
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -1 / +1
Query: 583 QGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
QGTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 17233 QGTSRPAHYHVLWDENNFTADGLQSLTNNLCYT 17331
Score = 50.1 bits (103), Expect(5) = 2e-037
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 17107 CHPTEFDFYLCSHAGIQ 17157
Score = 40.9 bits (83), Expect(5) = 2e-037
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 17720 AVRPLPALKENVKRVMFYC* 17779
Score = 39.6 bits (80), Expect(5) = 2e-037
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3 / +1
Query: 467 LGLCCPSCILRTLGSIAGSVLHGTRDVGQ 381
LG C CIL T S GS+LHG RD+ Q
Sbjct: 17554 LGYCSSPCILCTSSSF*GSILHGARDIRQ 17640
Score = 25.4 bits (49), Expect(5) = 2e-037
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / +3
Query: 490 YTYARCTRSV 461
Y YARCTRSV
Sbjct: 17427 YRYARCTRSV 17456
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome
I, complete sequence
Length = 95295
Score = 74.8 bits (157), Expect(5) = 2e-037
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -1 / -3
Query: 583 QGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
QGTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 1723 QGTSRPAHYHVLWDENNFTADGLQSLTNNLCYT 1625
Score = 50.1 bits (103), Expect(5) = 2e-037
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -3
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 1849 CHPTEFDFYLCSHAGIQ 1799
Score = 40.9 bits (83), Expect(5) = 2e-037
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 1236 AVRPLPALKENVKRVMFYC* 1177
Score = 39.6 bits (80), Expect(5) = 2e-037
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3 / -3
Query: 467 LGLCCPSCILRTLGSIAGSVLHGTRDVGQ 381
LG C CIL T S GS+LHG RD+ Q
Sbjct: 1402 LGYCSSPCILCTSSSF*GSILHGARDIRQ 1316
Score = 25.4 bits (49), Expect(5) = 2e-037
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -2
Query: 490 YTYARCTRSV 461
Y YARCTRSV
Sbjct: 1529 YRYARCTRSV 1500
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 149 bits (321), Expect = 5e-035
Identities = 59/87 (67%), Positives = 64/87 (73%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 219 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIV 398
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTS 371
RFY+EPE++ + S
Sbjct: 399 PPAYYAHLAAFRARFYLEPEIMQDNGS 479
Score = 104 bits (222), Expect = 2e-021
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = +3 / -1
Query: 390 ISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE*AG 569
ISGS + A*YAGGT +T+RVHRA*V*QRL I SAVKLFSSQRTW AG
Sbjct: 460 ISGSR*KRARNAAR*A*YAGGTIETDRVHRA*V*QRLLVRD*IPSAVKLFSSQRTW*CAG 281
Query: 570 LLVPWIPA*LQR*KSNSVG 626
LLVP IPA LQR*KSNSVG
Sbjct: 280 LLVP*IPAWLQR*KSNSVG 224
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 146 bits (314), Expect = 5e-034
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CH TEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 324 CHRTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIV 145
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 144 PPAYYAHLAAFRARFYMEPETSDS 73
Score = 106 bits (226), Expect = 7e-022
Identities = 54/83 (65%), Positives = 59/83 (71%)
Frame = +3 / +2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 74 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 253
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
*AG VP IPA*LQR*KSNSV W
Sbjct: 254 *AGREVP*IPA*LQR*KSNSVRW 322
>gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL48g02F 3', mRNA sequence
Length = 540
Score = 122 bits (260), Expect(2) = 6e-033
Identities = 50/74 (67%), Positives = 52/74 (70%)
Frame = -1 / -3
Query: 601 CSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXX 422
CSHAGIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 538 CSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 359
Query: 421 XXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 358 FRARFYMEPETSDS 317
Score = 89.0 bits (188), Expect(2) = 4e-021
Identities = 46/74 (62%), Positives = 51/74 (68%)
Frame = +3 / +3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVH A V* +L SAVKLFSSQRTW
Sbjct: 318 LSDVSGSM*NRALKAARCA*YAGGTIETERVHLAYV*HKLLVRD*SPSAVKLFSSQRTW* 497
Query: 561 *AGLLVPWIPA*LQ 602
*AG VP IPA*LQ
Sbjct: 498 *AGREVP*IPA*LQ 539
Score = 40.9 bits (83), Expect(2) = 6e-033
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 238 AVRPLPALKENVKRVMFYC* 179
Score = 34.1 bits (68), Expect(2) = 4e-021
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +3
Query: 267 VKGAPCQQ*NIILFTFSFTAGRGFT 341
++G QQ*N+ FTFSF AG G T
Sbjct: 162 IEGESTQQ*NMTRFTFSFRAGSGLT 236
>gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEAD) gene, complete cds
Length = 5895
Score = 92.7 bits (196), Expect(3) = 4e-032
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -1 / +2
Query: 604 LCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
+C I GTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 5234 VCVCCMI*GTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSV 5377
Score = 50.1 bits (103), Expect(3) = 4e-032
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 5114 CHPTEFDFYLCSHAGIQ 5164
Score = 44.1 bits (90), Expect(3) = 4e-032
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -1 / +1
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V VKPLPA+KE VKR+MFYC*+
Sbjct: 5602 VGVKPLPALKENVKRVMFYC*K 5667
>gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL68ZF03 5PRIM, mRNA sequence
Length = 616
Score = 138 bits (297), Expect = 1e-031
Identities = 57/96 (59%), Positives = 66/96 (68%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHP EFDFYL SHAGIQGTSRPAH HVL DEN FTAD++Q L NNLCYTYARCT+SV
Sbjct: 46 CHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIV 225
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R+YME EM D +S++ + +GV
Sbjct: 226 PPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGV 333
>emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL43ZD04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1092
Score = 138 bits (297), Expect = 1e-031
Identities = 57/96 (59%), Positives = 66/96 (68%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHP EFDFYL SHAGIQGTSRPAH HVL DEN FTAD++Q L NNLCYTYARCT+SV
Sbjct: 557 CHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIV 736
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R+YME EM D +S++ + +GV
Sbjct: 737 PPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGV 844
>ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G27880 mRNA, complete cds
Length = 2994
Score = 138 bits (297), Expect = 1e-031
Identities = 57/96 (59%), Positives = 66/96 (68%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHP EFDFYL SHAGIQGTSRPAH HVL DEN FTAD++Q L NNLCYTYARCT+SV
Sbjct: 2641 CHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIV 2820
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R+YME EM D +S++ + +GV
Sbjct: 2821 PPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGV 2928
>dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19
Length = 87286
Score = 92.7 bits (196), Expect(3) = 7e-030
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -1 / +1
Query: 604 LCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
+C I GTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV
Sbjct: 71023 VCVCCMI*GTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSV 71166
Score = 50.1 bits (103), Expect(3) = 7e-030
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHPTEFDFYLCSHAGIQ
Sbjct: 70904 CHPTEFDFYLCSHAGIQ 70954
Score = 44.1 bits (90), Expect(3) = 7e-030
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -1 / +3
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V VKPLPA+KE VKR+MFYC*+
Sbjct: 71391 VGVKPLPALKENVKRVMFYC*K 71456
>gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL51c02R 5', mRNA
sequence
Length = 528
Score = 110 bits (235), Expect(2) = 2e-029
Identities = 46/70 (65%), Positives = 48/70 (68%)
Frame = -1 / -1
Query: 589 GIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXR 410
GIQGTSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV R
Sbjct: 528 GIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 349
Query: 409 FYMEPEMLDN 380
FYMEPE D+
Sbjct: 348 FYMEPETSDS 319
Score = 40.9 bits (83), Expect(2) = 2e-029
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 240 AVRPLPALKENVKRVMFYC* 181
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
sequence
Length = 107214
Score = 112 bits (240), Expect(2) = 6e-027
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / -2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 45239 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 45060
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 45059 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 44955
Score = 29.9 bits (59), Expect(2) = 6e-027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / -2
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP + + VK +MFYC*
Sbjct: 44936 PLPKLSDNVKNLMFYC* 44886
>ref|NM_105611.3| Arabidopsis thaliana AGO7 (ARGONAUTE7) AT1G69440 (AGO7) mRNA,
complete cds
Length = 3163
Score = 112 bits (240), Expect(2) = 6e-027
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / +1
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 2770 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 2949
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 2950 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 3054
Score = 29.9 bits (59), Expect(2) = 6e-027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP + + VK +MFYC*
Sbjct: 3073 PLPKLSDNVKNLMFYC* 3123
>gb|AY394564.1| Arabidopsis thaliana ZIPPY mRNA, complete cds
Length = 3161
Score = 112 bits (240), Expect(2) = 6e-027
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / +1
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 2770 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 2949
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 2950 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 3054
Score = 29.9 bits (59), Expect(2) = 6e-027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP + + VK +MFYC*
Sbjct: 3073 PLPKLSDNVKNLMFYC* 3123
>gb|AV556836.1|AV556836 AV556836 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ053e11F 3', mRNA sequence
Length = 551
Score = 112 bits (240), Expect(2) = 6e-027
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / -2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 391 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 212
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 211 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 107
Score = 29.9 bits (59), Expect(2) = 6e-027
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / -2
Query: 334 PLPAVKEKVKRMMFYC* 284
PLP + + VK +MFYC*
Sbjct: 88 PLPKLSDNVKNLMFYC* 38
>gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL46g10F 3', mRNA sequence
Length = 511
Score = 100 bits (214), Expect(2) = 1e-026
Identities = 42/66 (63%), Positives = 44/66 (66%)
Frame = -1 / -1
Query: 577 TSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYME 398
TSRPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYME
Sbjct: 511 TSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME 332
Query: 397 PEMLDN 380
PE D+
Sbjct: 331 PETSDS 314
Score = 40.9 bits (83), Expect(2) = 1e-026
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 235 AVRPLPALKENVKRVMFYC* 176
>gb|AY600524.1| Arabidopsis thaliana hypothetical protein (At1g48405) mRNA,
complete cds
Length = 1462
Score = 96.8 bits (205), Expect(2) = 2e-025
Identities = 40/64 (62%), Positives = 42/64 (65%)
Frame = -1 / +3
Query: 571 RPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPE 392
RPAH HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYMEPE
Sbjct: 3 RPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPE 182
Query: 391 MLDN 380
D+
Sbjct: 183 TSDS 194
Score = 40.9 bits (83), Expect(2) = 2e-025
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 273 AVRPLPALKENVKRVMFYC* 332
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 112 bits (240), Expect = 8e-024
Identities = 45/95 (47%), Positives = 55/95 (57%)
Frame = -1 / -2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH G++GTSRP H H+LWDEN FT+DE+Q L NLCYT+ RCT+ +
Sbjct: 26105581 HPKEFDFYLCSHLGVKGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVP 26105402
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
R Y+E N S + S V
Sbjct: 26105401 PAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRV 26105297
>gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB072b01F 3', mRNA sequence
Length = 512
Score = 91.3 bits (193), Expect(2) = 9e-024
Identities = 38/62 (61%), Positives = 40/62 (64%)
Frame = -1 / -2
Query: 565 AHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPEML 386
AH HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYMEPE
Sbjct: 511 AHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 332
Query: 385 DN 380
D+
Sbjct: 331 DS 326
Score = 40.9 bits (83), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 247 AVRPLPALKENVKRVMFYC* 188
>gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB053a03F 3', mRNA sequence
Length = 507
Score = 91.3 bits (193), Expect(2) = 9e-024
Identities = 38/62 (61%), Positives = 40/62 (64%)
Frame = -1 / -2
Query: 565 AHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPEML 386
AH HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYMEPE
Sbjct: 506 AHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 327
Query: 385 DN 380
D+
Sbjct: 326 DS 321
Score = 40.9 bits (83), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 242 AVRPLPALKENVKRVMFYC* 183
>gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ139e07F 3', mRNA sequence
Length = 505
Score = 91.3 bits (193), Expect(2) = 9e-024
Identities = 38/62 (61%), Positives = 40/62 (64%)
Frame = -1 / -3
Query: 565 AHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPEML 386
AH HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYMEPE
Sbjct: 503 AHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 324
Query: 385 DN 380
D+
Sbjct: 323 DS 318
Score = 40.9 bits (83), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -3
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 239 AVRPLPALKENVKRVMFYC* 180
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 108 bits (230), Expect = 2e-022
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNN 497
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDENNFTAD +Q L NN
Sbjct: 259 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNN 393
>gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-A11 3',
mRNA sequence
Length = 499
Score = 86.8 bits (183), Expect(2) = 2e-022
Identities = 36/59 (61%), Positives = 38/59 (64%)
Frame = -1 / -1
Query: 556 HVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPEMLDN 380
HVLWDENNFTAD +Q L NNLCYTYARCTRSV RFYMEPE D+
Sbjct: 499 HVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 323
Score = 40.9 bits (83), Expect(2) = 2e-022
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 343 SVKPLPAVKEKVKRMMFYC* 284
+V+PLPA+KE VKR+MFYC*
Sbjct: 244 AVRPLPALKENVKRVMFYC* 185
>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete
sequence
Length = 118196
Score = 65.2 bits (136), Expect(3) = 2e-022
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1 / -3
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVL DEN FTAD++Q L NNLCYT
Sbjct: 3354 GTSRPAHYHVLLDENGFTADQLQMLTNNLCYT 3259
Score = 42.3 bits (86), Expect(3) = 2e-022
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHP EFDFYL SHAGIQ
Sbjct: 3491 CHPNEFDFYLNSHAGIQ 3441
Score = 37.3 bits (75), Expect(3) = 2e-022
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1 / -3
Query: 484 YARCTRSVCXXXXXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
YARCT+SV R+YME EM D +S++ + +GV
Sbjct: 3171 YARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGV 3031
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete
sequence
Length = 94884
Score = 65.2 bits (136), Expect(3) = 2e-022
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1 / -3
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVL DEN FTAD++Q L NNLCYT
Sbjct: 84697 GTSRPAHYHVLLDENGFTADQLQMLTNNLCYT 84602
Score = 42.3 bits (86), Expect(3) = 2e-022
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQ 581
CHP EFDFYL SHAGIQ
Sbjct: 84834 CHPNEFDFYLNSHAGIQ 84784
Score = 37.3 bits (75), Expect(3) = 2e-022
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1 / -3
Query: 484 YARCTRSVCXXXXXXXXXXXXXXXRFYMEPEMLDNQTSKTSNGPSGV 344
YARCT+SV R+YME EM D +S++ + +GV
Sbjct: 84514 YARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGV 84374
>emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequence GK-195F03-020163,
genomic survey sequence
Length = 493
Score = 74.8 bits (157), Expect(3) = 3e-021
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -1 / +1
Query: 583 QGTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
QGTSRPAH HVLWDENNFTAD +Q L NNLCYT
Sbjct: 124 QGTSRPAHYHVLWDENNFTADGLQSLTNNLCYT 222
Score = 40.9 bits (83), Expect(3) = 3e-021
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / +1
Query: 628 HPTEFDFYLCSHAGIQ 581
HPT F+FYLCSHAGIQ
Sbjct: 1 HPTYFEFYLCSHAGIQ 48
Score = 25.4 bits (49), Expect(3) = 3e-021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / +3
Query: 490 YTYARCTRSV 461
Y YARCTRSV
Sbjct: 318 YRYARCTRSV 347
>emb|AJ522260.1|ATH522260 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
288C04
Length = 545
Score = 65.2 bits (136), Expect(4) = 9e-021
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1 / +3
Query: 580 GTSRPAHSHVLWDENNFTADEMQPLPNNLCYT 485
GTSRPAH HVL DEN FTAD++Q L NNLCYT
Sbjct: 129 GTSRPAHYHVLLDENGFTADQLQMLTNNLCYT 224
Score = 34.5 bits (69), Expect(4) = 9e-021
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ G + LPA+K+ VK +MFYC*
Sbjct: 429 SRSTTTGVGQVISQLPAIKDNVKEVMFYC* 518
Score = 31.3 bits (62), Expect(4) = 9e-021
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / +1
Query: 619 EFDFYLCSHAGIQ 581
EFDFYL SHAGIQ
Sbjct: 4 EFDFYLNSHAGIQ 42
Score = 26.3 bits (51), Expect(4) = 9e-021
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / +1
Query: 441 TTHTWQHCGLGSTWNQRC 388
TT TW H +TW RC
Sbjct: 355 TTLTWLHSVPATTWRVRC 408
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,194,404,709
Number of Sequences: 1013581
Number of extensions: 14738895
Number of successful extensions: 142245
Number of sequences better than 1.0e-020: 45
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 38073933590
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)