TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 63 8e-037
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 51 3e-027
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 51 3e-027
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 51 3e-027
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 51 3e-027
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 51 3e-027
emb|AX589887.1| Sequence 69 from Patent WO02081695 51 3e-027
emb|AX652050.1| Sequence 948 from Patent WO03000898 51 3e-027
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 51 3e-027
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 51 7e-025
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 51 7e-025
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 51 7e-025
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 51 7e-025
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 51 7e-025
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 56 3e-021
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 56 4e-021
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 56 4e-021
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 51 9e-021
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 63.4 bits (132), Expect(6) = 8e-037
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V +PPF+ M + G +FK G GCG+C+++KC CS PV V ITD
Sbjct: 220 VAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITD 366
Score = 56.1 bits (116), Expect(6) = 8e-037
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+GTAFGAMA G++ +LR G + + +++V+C Y K
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGK 519
Score = 45.5 bits (93), Expect(6) = 8e-037
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3 / +1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD + + SWGA+W+ D PL+ PL++R+T+ K+V
Sbjct: 634 SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTV 753
Score = 29.5 bits (58), Expect(6) = 8e-037
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3 / +1
Query: 165 TYGKDWLDAKATWYGKPT 218
T DW A +TWYG PT
Sbjct: 124 TSDSDWSIAGSTWYGNPT 177
Score = 26.7 bits (52), Expect(6) = 8e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +1
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V +VIPANW+ Y
Sbjct: 736 ESGKTVVASNVIPANWQPGAIY 801
Score = 25.8 bits (50), Expect(6) = 8e-037
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKY 620
VTF ++KG N A+LV Y
Sbjct: 523 VTFQVDKGSNANSFAVLVAY 582
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 571
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 263 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 575 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 743 PLKGPFSVKLTTLSNNKTL 799
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 809 DVIPSNWVPKATYTSR 856
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +2
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 182 WLPATATWYG 211
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 571
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 263 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 415
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 575 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 743 PLKGPFSVKLTTLSNNKTL 799
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 809 DVIPSNWVPKATYTSR 856
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +2
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 182 WLPATATWYG 211
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 569
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 261 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 413
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +3
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 573 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 725
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 741 PLKGPFSVKLTTLSNNKTL 797
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 807 DVIPSNWVPKATYTSR 854
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 180 WLPATATWYG 209
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 473
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 165 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 317
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +3
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 477 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 629
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 645 PLKGPFSVKLTTLSNNKTL 701
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 711 DVIPSNWVPKATYTSR 758
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +3
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 84 WLPATATWYG 113
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 511 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 745 DVIPSNWVPKATYTSR 792
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 511 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 745 DVIPSNWVPKATYTSR 792
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 511 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 745 DVIPSNWVPKATYTSR 792
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 50.6 bits (104), Expect(6) = 3e-027
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA G +R G++++ +RR CKY K
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGK 507
Score = 42.3 bits (86), Expect(6) = 3e-027
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMN 416
V+ PF + + +FK G GCG+C++++C CS + V + TD +
Sbjct: 199 VDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQS 351
Score = 40.9 bits (83), Expect(6) = 3e-027
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ G +L+LL++Y ++ GS + +KH WGA W
Sbjct: 511 IAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 27.6 bits (54), Expect(6) = 3e-027
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +V+LTT K++
Sbjct: 679 PLKGPFSVKLTTLSNNKTL 735
Score = 26.3 bits (51), Expect(6) = 3e-027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 795 DVIPANWKANTAYTAK 842
DVIP+NW YT++
Sbjct: 745 DVIPSNWVPKATYTSR 792
Score = 25.8 bits (50), Expect(6) = 3e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 180 WLDAKATWYG 209
WL A ATWYG
Sbjct: 118 WLPATATWYG 147
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 51.0 bits (105), Expect(5) = 7e-025
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 582
Score = 44.6 bits (91), Expect(5) = 7e-025
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ P ++ N +FK+G GCG+C++++C CS + V V ITD
Sbjct: 283 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 38.2 bits (77), Expect(5) = 7e-025
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 586 IAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 28.6 bits (56), Expect(5) = 7e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 202 WLPAVATWYGSP 237
Score = 26.3 bits (51), Expect(5) = 7e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 754 PLKGPFSIKLTTLSAGKTL 810
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 51.0 bits (105), Expect(5) = 7e-025
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 587
Score = 44.6 bits (91), Expect(5) = 7e-025
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ P ++ N +FK+G GCG+C++++C CS + V V ITD
Sbjct: 288 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 434
Score = 38.2 bits (77), Expect(5) = 7e-025
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3 / +3
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 591 IAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 743
Score = 28.6 bits (56), Expect(5) = 7e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 207 WLPAVATWYGSP 242
Score = 26.3 bits (51), Expect(5) = 7e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 759 PLKGPFSIKLTTLSAGKTL 815
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 51.0 bits (105), Expect(5) = 7e-025
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 582
Score = 44.6 bits (91), Expect(5) = 7e-025
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ P ++ N +FK+G GCG+C++++C CS + V V ITD
Sbjct: 283 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 429
Score = 38.2 bits (77), Expect(5) = 7e-025
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 586 IAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 28.6 bits (56), Expect(5) = 7e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 202 WLPAVATWYGSP 237
Score = 26.3 bits (51), Expect(5) = 7e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 754 PLKGPFSIKLTTLSAGKTL 810
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 51.0 bits (105), Expect(5) = 7e-025
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 486
Score = 44.6 bits (91), Expect(5) = 7e-025
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ P ++ N +FK+G GCG+C++++C CS + V V ITD
Sbjct: 187 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 333
Score = 38.2 bits (77), Expect(5) = 7e-025
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 490 IAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 642
Score = 28.6 bits (56), Expect(5) = 7e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 106 WLPAVATWYGSP 141
Score = 26.3 bits (51), Expect(5) = 7e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 658 PLKGPFSIKLTTLSAGKTL 714
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 51.0 bits (105), Expect(5) = 7e-025
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 571
Score = 44.6 bits (91), Expect(5) = 7e-025
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ P ++ N +FK+G GCG+C++++C CS + V V ITD
Sbjct: 272 VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITD 418
Score = 38.2 bits (77), Expect(5) = 7e-025
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3 / +2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ ++ G+ + +KH WGA W
Sbjct: 575 IAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 28.6 bits (56), Expect(5) = 7e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 191 WLPAVATWYGSP 226
Score = 26.3 bits (51), Expect(5) = 7e-025
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 743 PLKGPFSIKLTTLSAGKTL 799
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 55.6 bits (115), Expect(5) = 3e-021
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V PP +M + G +F +G GCG+C+++ C CSG P+ V ITD
Sbjct: 221 VANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 367
Score = 51.5 bits (106), Expect(5) = 3e-021
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 551
H DL+G A GA+AK G+ ++LR AG+I + ++R C Y
Sbjct: 404 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 517
Score = 29.5 bits (58), Expect(5) = 3e-021
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3 / +2
Query: 705 AIWRKDSDKPLKGPLTVRLTT 767
A+W+ +S L+GP +RLT+
Sbjct: 671 AVWKVNSGSALRGPFNIRLTS 733
Score = 25.4 bits (49), Expect(5) = 3e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +2
Query: 795 DVIPANWKANTAY 833
+VIPANWK + +Y
Sbjct: 764 NVIPANWKPDESY 802
Score = 21.7 bits (41), Expect(5) = 3e-021
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +2
Query: 38 CECENHVVVDAGTGCDG 88
C C+N + AG+G G
Sbjct: 104 CYCQNETIDVAGSGTAG 154
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 55.6 bits (115), Expect(5) = 4e-021
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V PP +M + G +F +G GCG+C+++ C CSG P+ V ITD
Sbjct: 252 VANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 398
Score = 51.5 bits (106), Expect(5) = 4e-021
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 551
H DL+G A GA+AK G+ ++LR AG+I + ++R C Y
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 548
Score = 29.5 bits (58), Expect(5) = 4e-021
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3 / +3
Query: 705 AIWRKDSDKPLKGPLTVRLTT 767
A+W+ +S L+GP +RLT+
Sbjct: 702 AVWKVNSGSALRGPFNIRLTS 764
Score = 25.4 bits (49), Expect(5) = 4e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 795 DVIPANWKANTAY 833
+VIPANWK + +Y
Sbjct: 795 NVIPANWKPDESY 833
Score = 21.7 bits (41), Expect(5) = 4e-021
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +3
Query: 38 CECENHVVVDAGTGCDG 88
C C+N + AG+G G
Sbjct: 135 CYCQNETIDVAGSGTAG 185
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 55.6 bits (115), Expect(5) = 4e-021
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V PP +M + G +F +G GCG+C+++ C CSG P+ V ITD
Sbjct: 252 VANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITD 398
Score = 51.5 bits (106), Expect(5) = 4e-021
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY 551
H DL+G A GA+AK G+ ++LR AG+I + ++R C Y
Sbjct: 435 HIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 548
Score = 29.5 bits (58), Expect(5) = 4e-021
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3 / +3
Query: 705 AIWRKDSDKPLKGPLTVRLTT 767
A+W+ +S L+GP +RLT+
Sbjct: 702 AVWKVNSGSALRGPFNIRLTS 764
Score = 25.4 bits (49), Expect(5) = 4e-021
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 795 DVIPANWKANTAY 833
+VIPANWK + +Y
Sbjct: 795 NVIPANWKPDESY 833
Score = 21.7 bits (41), Expect(5) = 4e-021
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +3
Query: 38 CECENHVVVDAGTGCDG 88
C C+N + AG+G G
Sbjct: 135 CYCQNETIDVAGSGTAG 185
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 51.0 bits (105), Expect(6) = 9e-021
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G FG +A GE LR G+I + +RR CKY K
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGK 571
Score = 37.3 bits (75), Expect(6) = 9e-021
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3 / +2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L++LV++ ++ G+ + +KH WGA W
Sbjct: 575 IAFHVNEGSTDFWLSMLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 28.6 bits (56), Expect(6) = 9e-021
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 180 WLDAKATWYGKP 215
WL A ATWYG P
Sbjct: 191 WLPAVATWYGSP 226
Score = 26.3 bits (51), Expect(6) = 9e-021
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 732 PLKGPLTVRLTTEGGTKSV 788
PLKGP +++LTT K++
Sbjct: 743 PLKGPFSIKLTTLSAGKTL 799
Score = 25.4 bits (49), Expect(6) = 9e-021
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3 / +2
Query: 339 SCFEIKCDKPVECSGKPVVVHITD 410
+C++++C CS + V V ITD
Sbjct: 347 TCYKVRCLDKSICSRRAVTVIITD 418
Score = 22.1 bits (42), Expect(6) = 9e-021
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3 / +3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCG 338
V+ P ++ N +FK+G GCG
Sbjct: 273 VDVKPLHARVGAVNPILFKNGEGCG 347
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,352,210,149
Number of Sequences: 1013581
Number of extensions: 29053489
Number of successful extensions: 168152
Number of sequences better than 1.0e-020: 18
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 90235871664
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)