TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ005584.1|ATH005584 Arabidopsis thaliana mRNA for poly... 162 8e-039
gb|AY065239.1| Arabidopsis thaliana putative polygalacturon... 162 8e-039
gb|AY096534.1| Arabidopsis thaliana putative polygalacturon... 162 8e-039
gb|AY087578.1| Arabidopsis thaliana clone 36765 mRNA, compl... 162 8e-039
ref|NM_111661.2| Arabidopsis thaliana polygalacturonase AT3... 162 8e-039
emb|BX823174.1|CNS0A74O Arabidopsis thaliana Full-length cD... 160 4e-038
ref|NM_111663.2| Arabidopsis thaliana polygalacturonase AT3... 159 8e-038
gb|BT005245.1| Arabidopsis thaliana At3g07830 mRNA, complet... 154 2e-036
dbj|AK117953.1| Arabidopsis thaliana At3g07830 mRNA for put... 154 2e-036
ref|NM_111662.2| Arabidopsis thaliana polygalacturonase AT3... 154 2e-036
ref|NM_101576.1| Arabidopsis thaliana polygalacturonase AT1... 153 5e-036
gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I... 106 5e-036
emb|BX819999.1|CNS0AA2M Arabidopsis thaliana Full-length cD... 106 5e-036
ref|NM_128875.1| Arabidopsis thaliana polygalacturonase AT2... 106 9e-036
ref|NM_117928.1| Arabidopsis thaliana polygalacturonase AT4... 151 2e-035
ref|NM_128219.1| Arabidopsis thaliana polygalacturonase AT2... 150 3e-035
gb|AY089015.1| Arabidopsis thaliana clone 16377 mRNA, compl... 150 4e-035
gb|BT009687.1| Arabidopsis thaliana At5g48140 mRNA, complet... 150 4e-035
dbj|AK118684.1| Arabidopsis thaliana At5g48140 mRNA for put... 150 4e-035
ref|NM_124188.2| Arabidopsis thaliana polygalacturonase AT5... 150 4e-035
ref|NM_106487.2| Arabidopsis thaliana polygalacturonase AT1... 149 6e-035
gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome II... 100 8e-035
emb|AJ003135.1|ATAJ3135 Arabidopsis thaliana PGA5 gene, com... 96 8e-035
ref|NM_103464.1| Arabidopsis thaliana polygalacturonase AT1... 98 2e-032
ref|NM_103465.1| Arabidopsis thaliana polygalacturonase AT1... 98 2e-032
emb|BX822574.1|CNS0A73L Arabidopsis thaliana Full-length cD... 141 2e-032
gb|DQ056483.1| Arabidopsis thaliana glycoside hydrolase fam... 97 5e-032
ref|NM_103463.1| Arabidopsis thaliana polygalacturonase AT1... 97 5e-032
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 98 1e-031
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 98 1e-031
gb|AY062447.1| Arabidopsis thaliana polygalacturonase; pect... 105 1e-031
ref|NM_112258.2| Arabidopsis thaliana polygalacturonase AT3... 105 1e-031
emb|BX823616.1|CNS0A4Y3 Arabidopsis thaliana Full-length cD... 105 1e-031
emb|X73222.1|ATEGP A.thaliana mRNA for exopolygalacturonase 105 1e-031
gb|AY114635.1| Arabidopsis thaliana polygalacturonase; pect... 105 1e-031
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 95 1e-031
gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23... 95 2e-031
ref|NM_129589.1| Arabidopsis thaliana polygalacturonase AT2... 97 3e-031
gb|AF085279.1|AF085279 Arabidopsis thaliana ABA-regulated g... 97 4e-031
gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G2... 97 4e-031
gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J2... 99 5e-031
emb|AX652128.1| Sequence 1979 from Patent WO03000898 82 7e-031
gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis tha... 82 7e-031
ref|NM_127105.1| Arabidopsis thaliana polygalacturonase AT2... 99 1e-030
ref|NM_127106.1| Arabidopsis thaliana polygalacturonase AT2... 99 1e-030
gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O1... 99 2e-030
gb|AC006920.11| Arabidopsis thaliana chromosome 2 clone F26... 99 2e-030
ref|NM_117450.1| Arabidopsis thaliana polygalacturonase AT4... 100 2e-030
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 100 2e-030
emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosom... 100 3e-030
emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome ... 100 3e-030
gb|AY056173.1| Arabidopsis thaliana putative exopolygalactu... 100 3e-030
ref|NM_111664.1| Arabidopsis thaliana polygalacturonase AT3... 100 3e-030
emb|X72292.1|ATEXOPB A.thaliana (clone GBGa483) mRNA for ex... 100 3e-030
gb|AY091200.1| Arabidopsis thaliana putative exopolygalactu... 100 3e-030
gb|AU238792.1|AU238792 AU238792 RAFL19 Arabidopsis thaliana... 134 3e-030
ref|NM_127107.2| Arabidopsis thaliana polygalacturonase AT2... 97 7e-030
emb|AL161548.2|ATCHRIV48 Arabidopsis thaliana DNA chromosom... 99 2e-029
emb|AL021713.1|ATT9A21 Arabidopsis thaliana DNA chromosome ... 99 2e-029
emb|AL110123.1|ATF15J5 Arabidopsis thaliana DNA chromosome ... 99 2e-029
gb|AQ964056.1|AQ964056 LERGU38TF LERG Arabidopsis thaliana ... 99 2e-029
gb|AQ964057.1|AQ964057 LERGU38TR LERG Arabidopsis thaliana ... 99 2e-029
gb|BX836604.1|BX836604 BX836604 Arabidopsis thaliana Flower... 98 5e-029
dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosom... 97 2e-028
dbj|AB019229.1| Arabidopsis thaliana genomic DNA, chromosom... 60 3e-028
emb|AJ223189.1|ATAJ3189 Arabidopsis thaliana PGA2 gene 60 3e-028
gb|AV532721.1|AV532721 AV532721 Arabidopsis thaliana flower... 125 2e-027
gb|DQ056578.1| Arabidopsis thaliana putative polygalacturon... 90 8e-027
ref|NM_129951.1| Arabidopsis thaliana polygalacturonase AT2... 90 8e-027
gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BA... 62 1e-024
gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16... 62 1e-024
emb|Y16230.1|ATPGA3GE Arabidopsis thaliana PGA3 gene 62 1e-024
emb|AX507825.1| Sequence 2520 from Patent WO0216655 81 2e-024
ref|NM_100446.1| Arabidopsis thaliana polygalacturonase AT1... 81 2e-024
ref|NM_106666.2| Arabidopsis thaliana polygalacturonase AT1... 87 5e-024
gb|AY046002.1| Arabidopsis thaliana putative polygalacturon... 87 5e-024
gb|AY142668.1| Arabidopsis thaliana putative polygalacturon... 87 5e-024
gb|B12788.1|B12788 F7K19-T7 IGF Arabidopsis thaliana genomi... 70 5e-024
gb|AV782140.1|AV782140 AV782140 RAFL4 Arabidopsis thaliana ... 87 5e-024
gb|CL504361.1|CL504361 SAIL_736_A05.v1 SAIL Collection Arab... 68 2e-023
ref|NM_111676.3| Arabidopsis thaliana polygalacturonase AT3... 82 3e-023
ref|NM_129950.1| Arabidopsis thaliana polygalacturonase AT2... 77 8e-023
gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E1... 57 9e-023
gb|AV535049.1|AV535049 AV535049 Arabidopsis thaliana flower... 109 1e-022
ref|NM_105231.1| Arabidopsis thaliana polygalacturonase AT1... 85 1e-022
ref|NM_180028.1| Arabidopsis thaliana polygalacturonase AT2... 57 2e-022
emb|AX651722.1| Sequence 554 from Patent WO03000898 57 2e-022
ref|NM_115611.2| Arabidopsis thaliana ADPG1; polygalacturon... 63 3e-022
dbj|AK117942.1| Arabidopsis thaliana At3g57510 mRNA for put... 63 3e-022
emb|BX822956.1|CNS0A7SM Arabidopsis thaliana Full-length cD... 63 3e-022
emb|AX412563.1| Sequence 327 from Patent WO0222675 63 3e-022
gb|BT005376.1| Arabidopsis thaliana At3g57510 mRNA, complet... 63 3e-022
emb|AX651724.1| Sequence 557 from Patent WO03000898 63 3e-022
ref|NM_115848.3| Arabidopsis thaliana polygalacturonase AT3... 81 4e-022
emb|BX823105.1|CNS0A4UN Arabidopsis thaliana Full-length cD... 81 4e-022
gb|BT015766.1| Arabidopsis thaliana At3g59850 mRNA, complet... 81 4e-022
gb|BT020180.1| Arabidopsis thaliana At3g59850 mRNA, complet... 81 4e-022
gb|AF428425.1|AF428425 Arabidopsis thaliana At1g02790/T14P4... 66 5e-022
ref|NM_100158.1| Arabidopsis thaliana PGA4 (POLYGALACTURONA... 66 5e-022
gb|AY065210.1| Arabidopsis thaliana putative polygalacturon... 66 5e-022
emb|X72291.1|ATEXOPA A.thaliana (clone GBGe184) mRNA for ex... 66 5e-022
emb|BX824927.1|CNS0A4TY Arabidopsis thaliana Full-length cD... 80 5e-022
gb|AY133812.1| Arabidopsis thaliana clone U18487 putative p... 66 5e-022
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 106 6e-022
ref|NM_100445.1| Arabidopsis thaliana polygalacturonase AT1... 82 7e-022
emb|BX813348.1|CNS0AE3X Arabidopsis thaliana Full-length cD... 82 1e-021
gb|B78058.1|B78058 T30C17TR TAMU Arabidopsis thaliana genom... 72 3e-021
gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A... 57 3e-021
emb|AX461255.1| Sequence 184 from Patent WO0198480 57 3e-021
emb|AX461137.1| Sequence 66 from Patent WO0198480 57 3e-021
gb|CD533820.1|CD533820 33P11 Arabidopsis Leaf Senescence Li... 57 3e-021
emb|BX822380.1|CNS0A76T Arabidopsis thaliana Full-length cD... 78 4e-021
gb|AI994651.1|AI994651 701499138 A. thaliana, Ohio State cl... 78 4e-021
gb|AY078936.1| Arabidopsis thaliana At2g41850/T11A7.5 mRNA,... 57 5e-021
emb|BX815901.1|CNS0AEH8 Arabidopsis thaliana Full-length cD... 77 5e-021
gb|BZ292467.1|BZ292467 SALK_124287.53.80.x Arabidopsis thal... 72 9e-021
>emb|AJ005584.1|ATH005584 Arabidopsis thaliana mRNA for polygalacturonase
Length = 1350
Score = 162 bits (349), Expect = 8e-039
Identities = 69/153 (45%), Positives = 94/153 (61%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 725 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 904
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V++
Sbjct: 905 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIG 1084
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1085 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1183
>gb|AY065239.1| Arabidopsis thaliana putative polygalacturonase(PGA3 (At3g07820)
mRNA, complete cds
Length = 1401
Score = 162 bits (349), Expect = 8e-039
Identities = 69/153 (45%), Positives = 94/153 (61%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 767 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 946
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V++
Sbjct: 947 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIG 1126
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1127 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>gb|AY096534.1| Arabidopsis thaliana putative polygalacturonase (PGA3) (At3g07820)
mRNA, complete cds
Length = 1207
Score = 162 bits (349), Expect = 8e-039
Identities = 69/153 (45%), Positives = 94/153 (61%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 700 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 879
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V++
Sbjct: 880 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIG 1059
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1060 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1158
>gb|AY087578.1| Arabidopsis thaliana clone 36765 mRNA, complete sequence
Length = 1385
Score = 162 bits (349), Expect = 8e-039
Identities = 69/153 (45%), Positives = 94/153 (61%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 767 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 946
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V++
Sbjct: 947 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIG 1126
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1127 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>ref|NM_111661.2| Arabidopsis thaliana polygalacturonase AT3G07820 mRNA, complete cds
Length = 1400
Score = 162 bits (349), Expect = 8e-039
Identities = 69/153 (45%), Positives = 94/153 (61%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 767 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 946
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V++
Sbjct: 947 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIG 1126
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1127 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>emb|BX823174.1|CNS0A74O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 160 bits (344), Expect = 4e-038
Identities = 68/153 (44%), Positives = 93/153 (60%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 752 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 931
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K AS + + ++ FKNI GT +A+ L C+ PCQ V++
Sbjct: 932 SNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTPGNKDAVKLLCSKGYPCQNVEIG 1111
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
++DIKYNG+ C N K +G AC
Sbjct: 1112 DIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1210
>ref|NM_111663.2| Arabidopsis thaliana polygalacturonase AT3G07840 mRNA, complete cds
Length = 1296
Score = 159 bits (342), Expect = 8e-038
Identities = 66/153 (43%), Positives = 93/153 (60%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV + V CT+ GT NGLRIK++ + + AS +E I ++NV
Sbjct: 793 GISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNV 972
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K S + + D+ FKNI GTS +A+ L C+ PC V++
Sbjct: 973 SNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIG 1152
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
N++++Y G+ +C N K +G AC
Sbjct: 1153 NINLEYKGADGPPTFMCSNVSPKLVGTQNPKAC 1251
>gb|BT005245.1| Arabidopsis thaliana At3g07830 mRNA, complete cds
Length = 678
Score = 154 bits (331), Expect = 2e-036
Identities = 64/153 (41%), Positives = 93/153 (60%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + NV
Sbjct: 187 GISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNV 366
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ+
Sbjct: 367 SNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVG 546
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+++I+Y G+ +C N K +G AC
Sbjct: 547 DINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 645
>dbj|AK117953.1| Arabidopsis thaliana At3g07830 mRNA for putative polygalacturonase,
complete cds, clone: RAFL19-14-E02
Length = 989
Score = 154 bits (331), Expect = 2e-036
Identities = 64/153 (41%), Positives = 93/153 (60%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + NV
Sbjct: 275 GISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNV 454
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ+
Sbjct: 455 SNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVG 634
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+++I+Y G+ +C N K +G AC
Sbjct: 635 DINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 733
>ref|NM_111662.2| Arabidopsis thaliana polygalacturonase AT3G07830 mRNA, complete cds
Length = 1460
Score = 154 bits (331), Expect = 2e-036
Identities = 64/153 (41%), Positives = 93/153 (60%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + NV
Sbjct: 758 GISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNV 937
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ+
Sbjct: 938 SNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVG 1117
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+++I+Y G+ +C N K +G AC
Sbjct: 1118 DINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 1216
>ref|NM_101576.1| Arabidopsis thaliana polygalacturonase AT1G17150 mRNA, complete cds
Length = 1209
Score = 153 bits (329), Expect = 5e-036
Identities = 61/146 (41%), Positives = 89/146 (60%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +YE + M NV
Sbjct: 742 GISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMINV 921
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
PI IDQKYCP C G S + + +V KNI GTS A+ C+ PC+ VQL+
Sbjct: 922 ENPIGIDQKYCPYPPCSNMGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLI 1101
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIG 438
++++ ++G A+C+N G + G
Sbjct: 1102 DINLTHHGVDGPASALCENVDGSATG 1179
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
sequence
Length = 93158
Score = 106 bits (227), Expect(2) = 5e-036
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYK+EK+V+ + V I GTT+GLRIK++ S S + S FLYE I M NV
Sbjct: 45957 GISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINV 45778
Query: 181 SYPIIIDQKYCPNNICVKSG 240
PI+IDQ+YCP+ C G
Sbjct: 45777 GNPIVIDQQYCPHGQCDSPG 45718
Score = 66.6 bits (139), Expect(2) = 5e-036
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +1 / -3
Query: 241 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNA 420
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y G A+C+N
Sbjct: 45711 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 45532
Query: 421 IGKSIGLAKELACI*TN*LTCIYY 492
G G C + L C Y
Sbjct: 45531 GGSIRGKIVPANCRV*SLLDCSIY 45460
>emb|BX819999.1|CNS0AA2M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS59ZH05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1532
Score = 106 bits (227), Expect(2) = 5e-036
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYK+EK+V+ + V I GTT+GLRIK++ S S + S FLYE I M NV
Sbjct: 764 GISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINV 943
Query: 181 SYPIIIDQKYCPNNICVKSG 240
PI+IDQ+YCP+ C G
Sbjct: 944 GNPIVIDQQYCPHGQCDSPG 1003
Score = 66.6 bits (139), Expect(2) = 5e-036
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +1 / +2
Query: 241 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNA 420
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y G A+C+N
Sbjct: 1010 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 1189
Query: 421 IGKSIGLAKELACI*TN*LTCIYY 492
G G C + L C Y
Sbjct: 1190 GGSIRGKIVPANCRV*SLLDCSIY 1261
>ref|NM_128875.1| Arabidopsis thaliana polygalacturonase AT2G33160 mRNA, complete cds
Length = 1995
Score = 106 bits (227), Expect(2) = 9e-036
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRYK+EK+V+ + V I GTT+GLRIK++ S S + S FLYE I M NV
Sbjct: 742 GISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINV 921
Query: 181 SYPIIIDQKYCPNNICVKSG 240
PI+IDQ+YCP+ C G
Sbjct: 922 GNPIVIDQQYCPHGQCDSPG 981
Score = 65.7 bits (137), Expect(2) = 9e-036
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +1 / +1
Query: 241 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNA 420
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y G A+C+N
Sbjct: 988 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 1167
Query: 421 IGKSIG 438
G G
Sbjct: 1168 GGSIRG 1185
>ref|NM_117928.1| Arabidopsis thaliana polygalacturonase AT4G18180 mRNA, complete cds
Length = 1245
Score = 151 bits (324), Expect = 2e-035
Identities = 62/129 (48%), Positives = 89/129 (68%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY +EKDV + V C I+GTTNG+RIK++ +S A+ +E I M+NV
Sbjct: 748 GISVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNV 927
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
+ PIIIDQ YCP + C+ + SKV ++++ FKNI GTS++ A+ L+C+ +PC+ V L
Sbjct: 928 TNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLE 1107
Query: 361 NVDIKYNGS 387
NV + + S
Sbjct: 1108 NVHLDLSSS 1134
>ref|NM_128219.1| Arabidopsis thaliana polygalacturonase AT2G26620 mRNA, complete cds
Length = 1209
Score = 150 bits (323), Expect = 3e-035
Identities = 62/128 (48%), Positives = 86/128 (67%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKDLFVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
PI IDQKYCP+ C S V + D+ KNI+GTS A+ L C+ + PC+ V+L+
Sbjct: 919 GKPINIDQKYCPHPPCEHERKSHVQIQDLKLKNIYGTSKNKVAVNLQCSKSFPCKNVELI 1098
Query: 361 NVDIKYNG 384
+++IK NG
Sbjct: 1099 DINIKQNG 1122
>gb|AY089015.1| Arabidopsis thaliana clone 16377 mRNA, complete sequence
Length = 1462
Score = 150 bits (322), Expect = 4e-035
Identities = 62/153 (40%), Positives = 91/153 (59%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRY E++V +++ CT+ T NGLRIK++ + + AS +E I + NV
Sbjct: 812 GISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNV 991
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V++
Sbjct: 992 SNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVG 1171
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+V+I+Y G+ C N K +G AC
Sbjct: 1172 DVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1270
>gb|BT009687.1| Arabidopsis thaliana At5g48140 mRNA, complete cds
Length = 1188
Score = 150 bits (322), Expect = 4e-035
Identities = 62/153 (40%), Positives = 91/153 (59%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRY E++V +++ CT+ T NGLRIK++ + + AS +E I + NV
Sbjct: 700 GISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNV 879
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V++
Sbjct: 880 SNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVG 1059
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+V+I+Y G+ C N K +G AC
Sbjct: 1060 DVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1158
>dbj|AK118684.1| Arabidopsis thaliana At5g48140 mRNA for putative polygalacturonase,
complete cds, clone: RAFL19-95-F20
Length = 1466
Score = 150 bits (322), Expect = 4e-035
Identities = 62/153 (40%), Positives = 91/153 (59%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRY E++V +++ CT+ T NGLRIK++ + + AS +E I + NV
Sbjct: 814 GISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNV 993
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V++
Sbjct: 994 SNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVG 1173
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+V+I+Y G+ C N K +G AC
Sbjct: 1174 DVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1272
>ref|NM_124188.2| Arabidopsis thaliana polygalacturonase AT5G48140 mRNA, complete cds
Length = 1439
Score = 150 bits (322), Expect = 4e-035
Identities = 62/153 (40%), Positives = 91/153 (59%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLGRY E++V +++ CT+ T NGLRIK++ + + AS +E I + NV
Sbjct: 814 GISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNV 993
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V++
Sbjct: 994 SNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVG 1173
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELAC 459
+V+I+Y G+ C N K +G AC
Sbjct: 1174 DVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1272
>ref|NM_106487.2| Arabidopsis thaliana polygalacturonase AT1G78400 mRNA, complete cds
Length = 1215
Score = 149 bits (321), Expect = 6e-035
Identities = 65/154 (42%), Positives = 91/154 (59%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG++K EK V+ + V GT+NG+RIK++ S FL++ + M +V
Sbjct: 748 GISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDV 927
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
PI IDQ+YCPN C SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL
Sbjct: 928 QSPINIDQRYCPNPPCSFQSFSKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLF 1107
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIGLAKELACI 462
N++I + G +VC+N G G +CI
Sbjct: 1108 NINIVHRGRDGPATSVCENVGGWIGGKISPPSCI 1209
>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence,
complete sequence
Length = 121054
Score = 100 bits (213), Expect(2) = 2e-030
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV + V CT+ GT NGLRIK++ + + AS +E I ++NV
Sbjct: 53629 GISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNV 53450
Query: 181 SYPIIIDQKYCPNNICVK 234
S PI+IDQ+YCP N C K
Sbjct: 53449 SNPILIDQEYCPWNQCNK 53396
Score = 98.7 bits (209), Expect(2) = 1e-028
Identities = 42/78 (53%), Positives = 53/78 (67%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + NV
Sbjct: 51098 GISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNV 50919
Query: 181 SYPIIIDQKYCPNNICVK 234
S PI+IDQ+YCP N C K
Sbjct: 50918 SNPILIDQEYCPWNQCNK 50865
Score = 95.9 bits (203), Expect(2) = 8e-035
Identities = 41/78 (52%), Positives = 53/78 (67%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 48188 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 48009
Query: 181 SYPIIIDQKYCPNNICVK 234
S PI+IDQ+YCP N C K
Sbjct: 48008 SNPILIDQEYCPWNQCNK 47955
Score = 73.5 bits (154), Expect(2) = 8e-035
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +1 / -1
Query: 223 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTM 402
IC AS + + ++ FKNI GTS +A+ L C+ PCQ V++ ++DIKYNG+
Sbjct: 47881 ICDLQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPAT 47702
Query: 403 AVCKNAIGKSIGLAKELAC 459
C N K +G AC
Sbjct: 47701 FHCSNVSPKILGSQSPKAC 47645
Score = 63.4 bits (132), Expect(2) = 2e-030
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +1 / -3
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAI 423
S + + D+ FKNI GTS +A+ L C+ PC V++ N++++Y G+ +C N
Sbjct: 53183 STIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVS 53004
Query: 424 GKSIGLAKELAC 459
K +G AC
Sbjct: 53003 PKLVGTQNPKAC 52968
Score = 59.7 bits (124), Expect(2) = 1e-028
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +1 / -3
Query: 241 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNA 420
+S + + ++ F+ I GTS +A+ L C+ PC+ VQ+ +++I+Y G+ +C N
Sbjct: 50735 SSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNV 50556
Query: 421 IGKSIGLAKELAC 459
K +G AC
Sbjct: 50555 RPKLVGTQFPKAC 50517
Score = 55.1 bits (114), Expect(3) = 3e-027
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1 / -1
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
S+V ++DV K I GTS T A+ L C+ +PC + L ++++ +NG ++ C N
Sbjct: 57085 SQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 56912
Score = 53.3 bits (110), Expect(3) = 3e-027
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1 / -2
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVN 261
AS L+E ITMDNVS P++IDQ+YCP C +++ N
Sbjct: 57297 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVCNRIESN 57175
Score = 53.3 bits (110), Expect(3) = 3e-027
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 57432 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 57289
>emb|AJ003135.1|ATAJ3135 Arabidopsis thaliana PGA5 gene, complete CDS
Length = 2556
Score = 95.9 bits (203), Expect(2) = 8e-035
Identities = 41/78 (52%), Positives = 53/78 (67%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT+ T NGLRIK++ + S AS +E I + +V
Sbjct: 1830 GISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDV 2009
Query: 181 SYPIIIDQKYCPNNICVK 234
S PI+IDQ+YCP N C K
Sbjct: 2010 SNPILIDQEYCPWNQCNK 2063
Score = 73.5 bits (154), Expect(2) = 8e-035
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +1 / +1
Query: 223 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTM 402
IC AS + + ++ FKNI GTS +A+ L C+ PCQ V++ ++DIKYNG+
Sbjct: 2137 ICDLQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPAT 2316
Query: 403 AVCKNAIGKSIGLAKELAC 459
C N K +G AC
Sbjct: 2317 FHCSNVSPKILGSQSPKAC 2373
>ref|NM_103464.1| Arabidopsis thaliana polygalacturonase AT1G43090 mRNA, complete cds
Length = 1335
Score = 98.2 bits (208), Expect(2) = 2e-032
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 62.9 bits (131), Expect(2) = 2e-032
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 976 KKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 1128
>ref|NM_103465.1| Arabidopsis thaliana polygalacturonase AT1G43100 mRNA, complete cds
Length = 1335
Score = 98.2 bits (208), Expect(2) = 2e-032
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 62.9 bits (131), Expect(2) = 2e-032
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 976 KKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 1128
>emb|BX822574.1|CNS0A73L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB4ZD01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1339
Score = 141 bits (302), Expect = 2e-032
Identities = 61/146 (41%), Positives = 87/146 (59%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLGRY E+DV ++V CT T NGLRIK++ + S AS +E I + NV
Sbjct: 768 GISVGSLGRYGHEQDVSGIRVINCTPQETDNGLRIKTWPSAACSTTASNIHFENIILRNV 947
Query: 181 SYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLV 360
S PI+IDQ+YCP N C K +S + + D+ F+ I GTS +A+ L C PC+ VQ+
Sbjct: 948 SNPILIDQEYCPWNQCYKQKSSSIKLADICFRRIRGTSGKKDAVKLLCGKGYPCENVQVG 1127
Query: 361 NVDIKYNGSGNKTMAVCKNAIGKSIG 438
+++I+ G+ + N K +G
Sbjct: 1128 DINIQ*IGADGPATFMWSNVRPKLVG 1205
>gb|DQ056483.1| Arabidopsis thaliana glycoside hydrolase family 28 protein
(At1g43080) mRNA, complete cds
Length = 1215
Score = 97.3 bits (206), Expect(2) = 5e-032
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 62.9 bits (131), Expect(2) = 5e-032
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 976 KKGESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 1128
>ref|NM_103463.1| Arabidopsis thaliana polygalacturonase AT1G43080 mRNA, complete cds
Length = 1215
Score = 97.3 bits (206), Expect(2) = 5e-032
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 62.9 bits (131), Expect(2) = 5e-032
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 976 KKGESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 1128
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 98.2 bits (208), Expect(2) = 1e-031
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 704215 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 704036
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 704035 GKPINIDQKYCPHPPC 703988
Score = 98.2 bits (208), Expect(2) = 1e-031
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 707537 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 707358
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 707357 GKPINIDQKYCPHPPC 707310
Score = 97.3 bits (206), Expect(2) = 2e-031
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 700893 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 700714
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 700713 GKPINIDQKYCPHPPC 700666
Score = 95.0 bits (201), Expect(2) = 6e-030
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+YE I M +V
Sbjct: 672735 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASIIVVTNFIYENIQMIDV 672556
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 672555 GKPINIDQKYCPHPPC 672508
Score = 95.0 bits (201), Expect(2) = 5e-023
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVG LG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 710878 GISVGRLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 710699
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 710698 GKPINIDQKYCPHPPC 710651
Score = 82.2 bits (173), Expect(2) = 7e-031
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG++K EK V+ + V GT+NG+RIK++ S FL++ + M +V
Sbjct: 13740035 GISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDV 13739856
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQ+YCPN C
Sbjct: 13739855 QSPINIDQRYCPNPPC 13739808
Score = 73.9 bits (155), Expect(2) = 7e-031
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1 / -1
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAI 423
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + G +VC+N
Sbjct: 13739717 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 13739538
Query: 424 GKSIGLAKELACI 462
G G +CI
Sbjct: 13739537 GWIGGKISPPSCI 13739499
Score = 60.6 bits (126), Expect(2) = 2e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -2
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 700558 GESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 700412
Score = 60.6 bits (126), Expect(2) = 1e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 703880 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 703734
Score = 60.6 bits (126), Expect(2) = 1e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 707202 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 707056
Score = 57.9 bits (120), Expect(2) = 6e-030
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +1 / -1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTS A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 672401 GESHVQIQDIKLKNIYGTSKNIMAVNLQCSKSFPCKNVELIDINLKHTG 672255
Score = 51.0 bits (105), Expect(2) = 5e-023
Identities = 16/37 (43%), Positives = 28/37 (75%)
Frame = +1 / -3
Query: 274 KNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 710508 KNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 710398
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 98.2 bits (208), Expect(2) = 1e-031
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 80761 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 80582
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 80581 GKPINIDQKYCPHPPC 80534
Score = 98.2 bits (208), Expect(2) = 1e-031
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L S F+YE I M +V
Sbjct: 84083 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMIDV 83904
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 83903 GKPINIDQKYCPHPPC 83856
Score = 97.3 bits (206), Expect(2) = 2e-031
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 77439 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 77260
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 77259 GKPINIDQKYCPHPPC 77212
Score = 95.0 bits (201), Expect(2) = 7e-030
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+YE I M +V
Sbjct: 49281 GISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASIIVVTNFIYENIQMIDV 49102
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 49101 GKPINIDQKYCPHPPC 49054
Score = 95.0 bits (201), Expect(2) = 4e-025
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVG LG+ KDEKDV+ + V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 87424 GISVGRLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDV 87245
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 87244 GKPINIDQKYCPHPPC 87197
Score = 60.6 bits (126), Expect(2) = 2e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -2
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 77104 GESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 76958
Score = 60.6 bits (126), Expect(2) = 1e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 80426 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 80280
Score = 60.6 bits (126), Expect(2) = 1e-031
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1 / -3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 83748 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 83602
Score = 57.9 bits (120), Expect(2) = 7e-030
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +1 / -1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + D+ KNI+GTS A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 48947 GESHVQIQDIKLKNIYGTSKNIMAVNLQCSKSFPCKNVELIDINLKHTG 48801
Score = 51.0 bits (105), Expect(2) = 4e-025
Identities = 16/37 (43%), Positives = 28/37 (75%)
Frame = +1 / -3
Query: 274 KNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
KNI+GTSN A+ L C+ + PC+ V+L+++++K+ G
Sbjct: 87054 KNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKHTG 86944
>gb|AY062447.1| Arabidopsis thaliana polygalacturonase; pectinase (At3g14060;
MDC16.18) mRNA, complete cds
Length = 1667
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / +1
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
AS L+E ITMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1081 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1260
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
C+ +PC + L ++++ +NG ++ C N
Sbjct: 1261 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1359
Score = 53.3 bits (110), Expect(2) = 1e-031
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 946 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 1089
>ref|NM_112258.2| Arabidopsis thaliana polygalacturonase AT3G14040 mRNA, complete cds
Length = 1668
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / +1
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
AS L+E ITMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1081 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1260
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
C+ +PC + L ++++ +NG ++ C N
Sbjct: 1261 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1359
Score = 53.3 bits (110), Expect(2) = 1e-031
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 946 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 1089
>emb|BX823616.1|CNS0A4Y3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS57ZE12 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1644
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / +2
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
AS L+E ITMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1067 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1246
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
C+ +PC + L ++++ +NG ++ C N
Sbjct: 1247 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1345
Score = 53.3 bits (110), Expect(2) = 1e-031
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 932 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 1075
>emb|X73222.1|ATEGP A.thaliana mRNA for exopolygalacturonase
Length = 1617
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / +2
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
AS L+E ITMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1049 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1228
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
C+ +PC + L ++++ +NG ++ C N
Sbjct: 1229 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1327
Score = 53.3 bits (110), Expect(2) = 1e-031
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 914 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 1057
>gb|AY114635.1| Arabidopsis thaliana polygalacturonase; pectinase (At3g14060) mRNA,
complete cds
Length = 1484
Score = 105 bits (224), Expect(2) = 1e-031
Identities = 41/93 (44%), Positives = 58/93 (62%)
Frame = +1 / +1
Query: 139 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 318
AS L+E ITMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 991 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1170
Query: 319 NCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKN 417
C+ +PC + L ++++ +NG ++ C N
Sbjct: 1171 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1269
Score = 53.3 bits (110), Expect(2) = 1e-031
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKAS 144
GIS+GSLGRY +E+ V+ V V C I T NG+RIK++ S + ++
Sbjct: 856 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASN 999
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 95.5 bits (202), Expect(2) = 1e-031
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +YE + M NV
Sbjct: 5866757 GISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMINV 5866936
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP C
Sbjct: 5866937 ENPIGIDQKYCPYPPC 5866984
Score = 62.9 bits (131), Expect(2) = 1e-031
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1 / +3
Query: 229 VKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAV 408
+ G S + + +V KNI GTS A+ C+ PC+ VQL+++++ ++G A+
Sbjct: 5867073 LSQGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASAL 5867252
Query: 409 CKNAIGKSIG 438
C+N G + G
Sbjct: 5867253 CENVDGSATG 5867282
Score = 62.5 bits (130), Expect(3) = 8e-025
Identities = 21/47 (44%), Positives = 37/47 (78%)
Frame = +1 / -2
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
S+VA++D++FKNI GT+ T + + + C+ ++PCQGV +V+V++ Y G
Sbjct: 610991 SQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDYVG 610851
Score = 60.2 bits (125), Expect(3) = 8e-025
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSS 132
G+SVGSLG+YK+E+DV + V CT+ T NGLRIK++ S S
Sbjct: 611306 GLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPS 611175
Score = 30.4 bits (60), Expect(3) = 8e-025
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1 / -2
Query: 136 KASKFLYEGITMDNVSYPIIIDQKY 210
KA +E I M +V PIIIDQ Y
Sbjct: 611174 KAVDIKFENIIMQSVKNPIIIDQNY 611100
>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
sequence
Length = 114935
Score = 95.5 bits (202), Expect(2) = 2e-031
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +YE + M NV
Sbjct: 56497 GISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMINV 56318
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP C
Sbjct: 56317 ENPIGIDQKYCPYPPC 56270
Score = 62.9 bits (131), Expect(2) = 2e-031
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1 / -3
Query: 229 VKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAV 408
+ G S + + +V KNI GTS A+ C+ PC+ VQL+++++ ++G A+
Sbjct: 56181 LSQGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASAL 56002
Query: 409 CKNAIGKSIG 438
C+N G + G
Sbjct: 56001 CENVDGSATG 55972
>ref|NM_129589.1| Arabidopsis thaliana polygalacturonase AT2G40310 mRNA, complete cds
Length = 1215
Score = 97.3 bits (206), Expect(2) = 3e-031
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 60.2 bits (125), Expect(2) = 3e-031
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 399
+ G S V + D+ KNI+GTS A+ L C+ + PC+ ++L++++IK NG N +
Sbjct: 976 QKGESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 1143
>gb|AF085279.1|AF085279 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence
Length = 95713
Score = 97.3 bits (206), Expect(2) = 4e-031
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 80173 GISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 80352
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 80353 GKPINIDQKYCPHPPC 80400
Score = 59.7 bits (124), Expect(2) = 4e-031
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +1 / +2
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 399
G S V + D+ KNI+GTS A+ L C+ + PC+ ++L++++IK NG N +
Sbjct: 80516 GESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 80677
>gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete
sequence
Length = 82652
Score = 97.3 bits (206), Expect(2) = 4e-031
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 25123 GISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 25302
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 25303 GKPINIDQKYCPHPPC 25350
Score = 59.7 bits (124), Expect(2) = 4e-031
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +1 / +2
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 399
G S V + D+ KNI+GTS A+ L C+ + PC+ ++L++++IK NG N +
Sbjct: 25466 GESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 25627
>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete sequence
Length = 115851
Score = 98.7 bits (209), Expect(2) = 5e-031
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / -1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 111393 GISVGSLGKNKDEKDVKDLFVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 111214
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 111213 GKPINIDQKYCPHPPC 111166
Score = 57.9 bits (120), Expect(2) = 5e-031
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +1 / -3
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
S V + D+ KNI+GTS A+ L C+ + PC+ V+L++++IK NG
Sbjct: 111055 SHVQIQDLKLKNIYGTSKNKVAVNLQCSKSFPCKNVELIDINIKQNG 110915
>emb|AX652128.1| Sequence 1979 from Patent WO03000898
Length = 95769
Score = 82.2 bits (173), Expect(2) = 7e-031
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG++K EK V+ + V GT+NG+RIK++ S FL++ + M +V
Sbjct: 27611 GISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDV 27790
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQ+YCPN C
Sbjct: 27791 QSPINIDQRYCPNPPC 27838
Score = 73.9 bits (155), Expect(2) = 7e-031
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1 / +2
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAI 423
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + G +VC+N
Sbjct: 27929 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 28108
Query: 424 GKSIGLAKELACI 462
G G +CI
Sbjct: 28109 GWIGGKISPPSCI 28147
>gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I,
complete sequence
Length = 95769
Score = 82.2 bits (173), Expect(2) = 7e-031
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG++K EK V+ + V GT+NG+RIK++ S FL++ + M +V
Sbjct: 27611 GISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDV 27790
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQ+YCPN C
Sbjct: 27791 QSPINIDQRYCPNPPC 27838
Score = 73.9 bits (155), Expect(2) = 7e-031
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1 / +2
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKTMAVCKNAI 423
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + G +VC+N
Sbjct: 27929 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 28108
Query: 424 GKSIGLAKELACI 462
G G +CI
Sbjct: 28109 GWIGGKISPPSCI 28147
>ref|NM_127105.1| Arabidopsis thaliana polygalacturonase AT2G15450 mRNA, complete cds
Length = 1215
Score = 98.7 bits (209), Expect(2) = 1e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKNKDEKDVKDLIVRDVIFNGTSDGIRIKNWESSASKILVSNFVYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 57.0 bits (118), Expect(2) = 1e-030
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
+ G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 976 RKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 1128
>ref|NM_127106.1| Arabidopsis thaliana polygalacturonase AT2G15460 mRNA, complete cds
Length = 1209
Score = 98.7 bits (209), Expect(2) = 1e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 739 GISVGSLGKSKDEKDVKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 918
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 919 GKPINIDQKYCPHPPC 966
Score = 57.0 bits (118), Expect(2) = 1e-030
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
+ G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 976 RKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 1128
>gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete
sequence
Length = 119753
Score = 98.7 bits (209), Expect(2) = 2e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 678 GISVGSLGKSKDEKDVKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 857
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 858 GKPINIDQKYCPHPPC 905
Score = 96.8 bits (205), Expect(2) = 1e-029
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / +2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKD +D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 4076 GISVGSLGKNKDEKDAKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 4255
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 4256 GKPINIDQKYCPHPPC 4303
Score = 56.1 bits (116), Expect(2) = 2e-030
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 1018 GESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 1164
Score = 55.1 bits (114), Expect(2) = 1e-029
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / +3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 4416 GESHVQIQNLKLKNIYGTSKNKVAMNLQCSKIFPCKNVELIDINIKQNG 4562
>gb|AC006920.11| Arabidopsis thaliana chromosome 2 clone F26H6 map mi398, complete
sequence
Length = 89301
Score = 98.7 bits (209), Expect(2) = 2e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / -3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 6151 GISVGSLGKSKDEKDVKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 5972
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 5971 GKPINIDQKYCPHPPC 5924
Score = 98.7 bits (209), Expect(2) = 2e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 9548 GISVGSLGKNKDEKDVKDLIVRDVIFNGTSDGIRIKNWESSASKILVSNFVYENIQMIDV 9369
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 9368 GKPINIDQKYCPHPPC 9321
Score = 96.8 bits (205), Expect(2) = 1e-029
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +1 / -2
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKD +D+ V GT++G+RIK++E S S + S F+YE I M +V
Sbjct: 2753 GISVGSLGKNKDEKDAKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDV 2574
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 2573 GKPINIDQKYCPHPPC 2526
Score = 56.1 bits (116), Expect(2) = 2e-030
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / -1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 5811 GESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 5665
Score = 56.1 bits (116), Expect(2) = 2e-030
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / -3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 9208 GESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 9062
Score = 55.1 bits (114), Expect(2) = 1e-029
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / -3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ V+L++++IK NG
Sbjct: 2413 GESHVQIQNLKLKNIYGTSKNKVAMNLQCSKIFPCKNVELIDINIKQNG 2267
>ref|NM_117450.1| Arabidopsis thaliana polygalacturonase AT4G13760 mRNA, complete cds
Length = 1128
Score = 100 bits (213), Expect(2) = 2e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ + GT++G+RIK++E S S + S FLYE I M +V
Sbjct: 652 GISVGSLGKNKDEKDVKDLTIRDVIFNGTSDGIRIKTWESSASKILVSNFLYENIQMIDV 831
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 832 GKPINIDQKYCPHPPC 879
Score = 54.2 bits (112), Expect(2) = 2e-030
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +1 / +1
Query: 232 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
+ G S V + ++ KNI+GTS A+ L C+ PC+ ++L++++I NG
Sbjct: 889 QKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKRFPCKNIELIDINITNNG 1041
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 100 bits (213), Expect(2) = 2e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +3
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ + GT++G+RIK++E S S + S FLYE I M +V
Sbjct: 3901821 GISVGSLGKNKDEKDVKDLTIRDVIFNGTSDGIRIKTWESSASKILVSNFLYENIQMIDV 3902000
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 3902001 GKPINIDQKYCPHPPC 3902048
Score = 99.1 bits (210), Expect(2) = 2e-029
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1 / +2
Query: 7 SVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSY 186
SVGSLGRY +EKDV + V C I+GTTNG+RIK++ +S A+ +E I M+NV+
Sbjct: 5979497 SVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTN 5979676
Query: 187 PIIIDQKYCPNNICVKS 237
PIIIDQ YCP + C+ +
Sbjct: 5979677 PIIIDQSYCPFSSCISN 5979727
Score = 53.8 bits (111), Expect(2) = 2e-030
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1 / +3
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ ++L++++I NG
Sbjct: 3902154 GESHVQIQNLKLKNIYGTSKNKVAVNLQCSKRFPCKNIELIDINITNNG 3902300
Score = 52.4 bits (108), Expect(2) = 2e-029
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1 / +2
Query: 244 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGS 387
SKV ++++ FKNI GTS++ A+ L+C+ +PC+ V L NV + + S
Sbjct: 5979818 SKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSS 5979961
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
Length = 199667
Score = 100 bits (213), Expect(2) = 3e-030
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 1 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNV 180
GISVGSLG+ KDEKDV+D+ + GT++G+RIK++E S S + S FLYE I M +V
Sbjct: 81190 GISVGSLGKNKDEKDVKDLTIRDVIFNGTSDGIRIKTWESSASKILVSNFLYENIQMIDV 81369
Query: 181 SYPIIIDQKYCPNNIC 228
PI IDQKYCP+ C
Sbjct: 81370 GKPINIDQKYCPHPPC 81417
Score = 53.8 bits (111), Expect(2) = 3e-030
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1 / +1
Query: 238 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNG 384
G S V + ++ KNI+GTS A+ L C+ PC+ ++L++++I NG
Sbjct: 81523 GESHVQIQNLKLKNIYGTSKNKVAVNLQCSKRFPCKNIELIDINITNNG 81669
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,139,607,727
Number of Sequences: 1013581
Number of extensions: 15121038
Number of successful extensions: 132279
Number of sequences better than 1.0e-020: 127
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 42276900285
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)