TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_130326.2| Arabidopsis thaliana U1A (SPLICEOSOMAL PRO... 183 7e-088
gb|AY052663.1| Arabidopsis thaliana At2g47580/T30B22.12 mRN... 183 7e-088
gb|AY059875.1| Arabidopsis thaliana small nuclear ribonucle... 183 7e-088
emb|AX286683.1| Sequence 5 from Patent WO0181599 183 7e-088
emb|Z49991.1|ATU1A A.thaliana mRNA for U1snRNP-specific pro... 183 7e-088
gb|AY093341.1| Arabidopsis thaliana small nuclear ribonucle... 183 7e-088
gb|AY142070.1| Arabidopsis thaliana At2g47580/T30B22.12 mRN... 183 7e-088
emb|AX505378.1| Sequence 73 from Patent WO0216655 183 7e-088
ref|NM_128579.2| Arabidopsis thaliana U2B'; RNA binding / n... 149 9e-073
emb|BX820482.1|CNS0A9I0 Arabidopsis thaliana Full-length cD... 149 9e-073
emb|BX821303.1|CNS0A92A Arabidopsis thaliana Full-length cD... 149 9e-073
gb|BT003068.1| Arabidopsis thaliana At2g30260 gene, complet... 149 5e-072
gb|AY087401.1| Arabidopsis thaliana clone 34995 mRNA, compl... 147 6e-072
gb|AY142487.1| Arabidopsis thaliana putative spliceosomal p... 148 2e-067
ref|NM_180605.1| Arabidopsis thaliana RNA binding / nucleic... 148 3e-067
ref|NM_100569.3| Arabidopsis thaliana RNA binding / nucleic... 148 3e-067
gb|AY080742.1| Arabidopsis thaliana putative spliceosomal p... 148 4e-067
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 136 1e-064
emb|BX819421.1|CNS0A9VW Arabidopsis thaliana Full-length cD... 136 9e-063
gb|AV824661.1|AV824661 AV824661 RAFL6 Arabidopsis thaliana ... 183 2e-061
gb|AC002338.3| Arabidopsis thaliana chromosome 2 clone T9D9... 147 6e-058
gb|AV826569.1|AV826569 AV826569 RAFL8 Arabidopsis thaliana ... 183 2e-057
gb|CB255330.1|CB255330 45-E010699-019-002-J12-T7R MPIZ-ADIS... 131 3e-056
gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis ... 133 2e-053
gb|AV551215.1|AV551215 AV551215 Arabidopsis thaliana roots ... 183 3e-053
gb|AU235545.1|AU235545 AU235545 RAFL14 Arabidopsis thaliana... 149 3e-053
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 133 3e-049
gb|AI996034.1|AI996034 701549730 A. thaliana, Columbia Col-... 136 8e-045
gb|AV558034.1|AV558034 AV558034 Arabidopsis thaliana green ... 147 2e-042
gb|CB074476.1|CB074476 EST01252 Avirulent Peronospora paras... 132 3e-039
gb|BP630450.1|BP630450 BP630450 RAFL17 Arabidopsis thaliana... 136 5e-039
gb|AV795552.1|AV795552 AV795552 RAFL8 Arabidopsis thaliana ... 136 3e-035
gb|BP796456.1|BP796456 BP796456 RAFL5 Arabidopsis thaliana ... 149 1e-034
gb|AU226270.1|AU226270 AU226270 RAFL14 Arabidopsis thaliana... 147 5e-034
gb|AV559112.1|AV559112 AV559112 Arabidopsis thaliana green ... 147 5e-034
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 147 5e-034
gb|T04343.1|T04343 390 Lambda-PRL2 Arabidopsis thaliana cDN... 97 1e-033
gb|AW004535.1|AW004535 701932082 A. thaliana, mixed source ... 122 7e-033
gb|AV538871.1|AV538871 AV538871 Arabidopsis thaliana roots ... 134 2e-031
gb|BP797968.1|BP797968 BP797968 RAFL14 Arabidopsis thaliana... 89 2e-031
gb|AI992475.1|AI992475 701557908 A. thaliana, Ohio State cl... 133 7e-030
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 133 7e-030
gb|AV781919.1|AV781919 AV781919 RAFL4 Arabidopsis thaliana ... 133 1e-029
gb|BP798520.1|BP798520 BP798520 RAFL14 Arabidopsis thaliana... 133 1e-029
gb|AA041158.1|AA041158 24424 CD4-13 Arabidopsis thaliana cD... 128 3e-029
gb|BP594312.1|BP594312 BP594312 RAFL15 Arabidopsis thaliana... 110 7e-029
gb|BP624813.1|BP624813 BP624813 RAFL17 Arabidopsis thaliana... 129 1e-028
gb|BP810316.1|BP810316 BP810316 RAFL16 Arabidopsis thaliana... 128 3e-028
gb|BP566944.1|BP566944 BP566944 RAFL14 Arabidopsis thaliana... 127 6e-028
gb|AV821462.1|AV821462 AV821462 RAFL4 Arabidopsis thaliana ... 121 5e-026
gb|AV787171.1|AV787171 AV787171 RAFL6 Arabidopsis thaliana ... 111 1e-025
gb|AI100091.1|AI100091 34466 Lambda-PRL2 Arabidopsis thalia... 118 3e-025
gb|BP576391.1|BP576391 BP576391 RAFL14 Arabidopsis thaliana... 66 3e-025
gb|BP781942.1|BP781942 BP781942 RAFL7 Arabidopsis thaliana ... 105 5e-024
gb|BH905650.1|BH905650 SALK_107553.54.95.x Arabidopsis thal... 111 4e-023
gb|BP662484.1|BP662484 BP662484 RAFL21 Arabidopsis thaliana... 105 1e-022
gb|BP657588.1|BP657588 BP657588 RAFL19 Arabidopsis thaliana... 51 8e-021
>ref|NM_130326.2| Arabidopsis thaliana U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding /
nucleic acid binding AT2G47580 (U1A) mRNA, complete cds
Length = 980
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 82 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 261
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 262 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 441
Query: 476 A 478
+
Sbjct: 442 S 444
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 565 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 744
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 745 GFKIQQNQMLI 777
Score = 96.8 bits (205), Expect(3) = 3e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -1
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 377 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 198
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 197 NISSIFPN*ENTAFSD 150
Score = 83.5 bits (176), Expect(3) = 3e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -1
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 755 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 576
Query: 606 MLFG 595
+LFG
Sbjct: 575 ILFG 564
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -3
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 465 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 286
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 285 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 106
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 105 VNRLIRRN 82
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -3
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 777 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 598
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 597 RKVLDKENIIW 565
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 496 APPLSQVPYPGGMKPNMPEAPAPPN 570
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 762 KPDAHHVCQEI 794
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 794 YFLAYVMSIWF 762
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 469 SAYPGVYGA 495
>gb|AY052663.1| Arabidopsis thaliana At2g47580/T30B22.12 mRNA, complete cds
Length = 966
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 78 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 257
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 258 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 437
Query: 476 A 478
+
Sbjct: 438 S 440
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 561 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 740
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 741 GFKIQQNQMLI 773
Score = 96.8 bits (205), Expect(3) = 3e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -3
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 373 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 194
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 193 NISSIFPN*ENTAFSD 146
Score = 83.5 bits (176), Expect(3) = 3e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -3
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 751 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 572
Query: 606 MLFG 595
+LFG
Sbjct: 571 ILFG 560
Score = 80.3 bits (169), Expect(2) = 7e-030
Identities = 43/128 (33%), Positives = 66/128 (51%)
Frame = -1 / -2
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL H V+E K
Sbjct: 461 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYPHLLVVERKI 282
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 281 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 102
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 101 VNRLIRRN 78
Score = 73.5 bits (154), Expect(2) = 7e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -2
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 773 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 594
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 593 RKVLDKENIIW 561
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +3
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 492 APPLSQVPYPGGMKPNMPEAPAPPN 566
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 758 KPDAHHVCQEI 790
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -3
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 790 YFLAYVMSIWF 758
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 465 SAYPGVYGA 491
>gb|AY059875.1| Arabidopsis thaliana small nuclear ribonucleoprotein U1A
(At2g47580; T30B22.12) mRNA, complete cds
Length = 944
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 82 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 261
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 262 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 441
Query: 476 A 478
+
Sbjct: 442 S 444
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 565 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 744
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 745 GFKIQQNQMLI 777
Score = 96.8 bits (205), Expect(3) = 3e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -1
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 377 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 198
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 197 NISSIFPN*ENTAFSD 150
Score = 83.5 bits (176), Expect(3) = 3e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -1
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 755 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 576
Query: 606 MLFG 595
+LFG
Sbjct: 575 ILFG 564
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -3
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 465 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 286
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 285 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 106
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 105 VNRLIRRN 82
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -3
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 777 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 598
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 597 RKVLDKENIIW 565
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 496 APPLSQVPYPGGMKPNMPEAPAPPN 570
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 762 KPDAHHVCQEI 794
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 794 YFLAYVMSIWF 762
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 469 SAYPGVYGA 495
>emb|AX286683.1| Sequence 5 from Patent WO0181599
Length = 920
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 69 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 248
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 249 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 428
Query: 476 A 478
+
Sbjct: 429 S 431
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 552 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 731
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 732 GFKIQQNQMLI 764
Score = 96.8 bits (205), Expect(3) = 3e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -2
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 364 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 185
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 184 NISSIFPN*ENTAFSD 137
Score = 83.5 bits (176), Expect(3) = 3e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -2
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 742 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 563
Query: 606 MLFG 595
+LFG
Sbjct: 562 ILFG 551
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -1
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 452 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 273
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 272 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 93
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 92 VNRLIRRN 69
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -1
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 764 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 585
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 584 RKVLDKENIIW 552
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +3
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 483 APPLSQVPYPGGMKPNMPEAPAPPN 557
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 749 KPDAHHVCQEI 781
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 781 YFLAYVMSIWF 749
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 456 SAYPGVYGA 482
>emb|Z49991.1|ATU1A A.thaliana mRNA for U1snRNP-specific protein (U1A)
Length = 920
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 69 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 248
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 249 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 428
Query: 476 A 478
+
Sbjct: 429 S 431
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 552 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 731
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 732 GFKIQQNQMLI 764
Score = 96.8 bits (205), Expect(3) = 3e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -2
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 364 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 185
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 184 NISSIFPN*ENTAFSD 137
Score = 83.5 bits (176), Expect(3) = 3e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -2
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 742 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 563
Query: 606 MLFG 595
+LFG
Sbjct: 562 ILFG 551
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -1
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 452 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 273
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 272 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 93
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 92 VNRLIRRN 69
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -1
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 764 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 585
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 584 RKVLDKENIIW 552
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +3
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 483 APPLSQVPYPGGMKPNMPEAPAPPN 557
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 749 KPDAHHVCQEI 781
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 781 YFLAYVMSIWF 749
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +3
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 456 SAYPGVYGA 482
>gb|AY093341.1| Arabidopsis thaliana small nuclear ribonucleoprotein U1A
(At2g47580) mRNA, complete cds
Length = 842
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 40 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 219
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 220 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 399
Query: 476 A 478
+
Sbjct: 400 S 402
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 523 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 702
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 703 GFKIQQNQMLI 735
Score = 96.8 bits (205), Expect(3) = 2e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -1
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 335 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 156
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 155 NISSIFPN*ENTAFSD 108
Score = 83.5 bits (176), Expect(3) = 2e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -1
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 713 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 534
Query: 606 MLFG 595
+LFG
Sbjct: 533 ILFG 522
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -3
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 423 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 244
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 243 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 64
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 63 VNRLIRRN 40
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -3
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 735 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 556
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 555 RKVLDKENIIW 523
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 454 APPLSQVPYPGGMKPNMPEAPAPPN 528
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 720 KPDAHHVCQEI 752
Score = 28.1 bits (55), Expect(3) = 2e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 752 YFLAYVMSIWF 720
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 427 SAYPGVYGA 453
>gb|AY142070.1| Arabidopsis thaliana At2g47580/T30B22.12 mRNA, complete cds
Length = 753
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 40 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 219
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 220 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 399
Query: 476 A 478
+
Sbjct: 400 S 402
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 523 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 702
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 703 GFKIQQNQMLI 735
Score = 96.8 bits (205), Expect(3) = 2e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -2
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 335 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 156
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 155 NISSIFPN*ENTAFSD 108
Score = 83.5 bits (176), Expect(3) = 2e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -2
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 713 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 534
Query: 606 MLFG 595
+LFG
Sbjct: 533 ILFG 522
Score = 80.3 bits (169), Expect(2) = 7e-030
Identities = 43/128 (33%), Positives = 66/128 (51%)
Frame = -1 / -1
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL H V+E K
Sbjct: 423 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYPHLLVVERKI 244
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 243 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 64
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 63 VNRLIRRN 40
Score = 73.5 bits (154), Expect(2) = 7e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -1
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 735 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 556
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 555 RKVLDKENIIW 523
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 454 APPLSQVPYPGGMKPNMPEAPAPPN 528
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 720 KPDAHHVCQEI 752
Score = 28.1 bits (55), Expect(3) = 2e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 752 YFLAYVMSIWF 720
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 427 SAYPGVYGA 453
>emb|AX505378.1| Sequence 73 from Patent WO0216655
Length = 753
Score = 183 bits (394), Expect(5) = 7e-088
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 40 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 219
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 220 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 399
Query: 476 A 478
+
Sbjct: 400 S 402
Score = 136 bits (291), Expect(5) = 7e-088
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 523 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 702
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 703 GFKIQQNQMLI 735
Score = 96.8 bits (205), Expect(3) = 2e-039
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -2
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 335 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 156
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 155 NISSIFPN*ENTAFSD 108
Score = 83.5 bits (176), Expect(3) = 2e-039
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / -2
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 713 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 534
Query: 606 MLFG 595
+LFG
Sbjct: 533 ILFG 522
Score = 82.6 bits (174), Expect(2) = 1e-030
Identities = 44/128 (34%), Positives = 67/128 (52%)
Frame = -1 / -1
Query: 499 HANLTSTSIMVMLALLLLFRFFISPLSSFSRYKGAISLCYNI*FGLGILNSHSFVIEGKA 320
H + IMV++ L L F + LS +R K I L NI*F GIL SH V+E K
Sbjct: 423 HGHAHLCRIMVLVFLFLAASFLLMSLSLLARNKCTIGLGNNI*FCFGILYSHLLVVERKI 244
Query: 319 LHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFELDLLVEVVD 140
+H S S + ED PSL+F+L+ L+ ++++ P + +L VE+VD
Sbjct: 243 IHFSNSSGSRLGVVEDYPSLSFVLKGLKRQYLQYLPELREHCIQRFLQLIKLHFFVEIVD 64
Query: 139 IDGDVRRD 116
++ +RR+
Sbjct: 63 VNRLIRRN 40
Score = 73.5 bits (154), Expect(2) = 1e-030
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -1 / -1
Query: 808 DHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRLV 629
D + N E LK +H L L+S LH+ + R +H N L++ VLAE+HL+HH LV
Sbjct: 735 DEHLVLLNLETLKSLHCDRRLHLISKLHKGDSRFGFNHSNFLKSLVLAEQHLKHHWSCLV 556
Query: 628 WQVLDKQDVVW 596
+VLDK++++W
Sbjct: 555 RKVLDKENIIW 523
Score = 31.3 bits (62), Expect(5) = 7e-088
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 454 APPLSQVPYPGGMKPNMPEAPAPPN 528
Score = 28.6 bits (56), Expect(5) = 7e-088
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 720 KPDAHHVCQEI 752
Score = 28.1 bits (55), Expect(3) = 2e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 752 YFLAYVMSIWF 720
Score = 24.0 bits (46), Expect(5) = 7e-088
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 427 SAYPGVYGA 453
>ref|NM_128579.2| Arabidopsis thaliana U2B'; RNA binding / nucleic acid binding
AT2G30260 (U2B') mRNA, complete cds
Length = 926
Score = 149 bits (320), Expect(2) = 9e-073
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 91 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 270
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 271 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 450
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 451 TANGPSANGPSANNGV 498
Score = 147 bits (316), Expect(2) = 9e-073
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / +1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 529 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 708
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 709 QPLQGFKITPQNPMVISFAKK**ESCFCL 795
Score = 96.4 bits (204), Expect(2) = 9e-033
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / -1
Query: 858 TSGKHCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLK 679
T+ K +++F A MTI F VILK *R +A A SS YST AIPGFASII SL
Sbjct: 803 TTNKQKQDSYHFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLN 624
Query: 678 PGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
PGY K SIM VVSCG+F MLFG I+S
Sbjct: 623 PGYCSKRSCSIMLVVSCGRF*MKSMLFGGIVS 528
Score = 73.5 bits (154), Expect(2) = 2e-025
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = -1 / -3
Query: 811 DDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRL 632
DDH + +FE LK +H L ++ +L++ + +DH L E+RVL EE L HH L
Sbjct: 756 DDHWILGSDFETLKRLHSYGSLNIIFVLYKRDSWFCVDHSYLFESRVLFEEKL*HHACCL 577
Query: 631 VWQVLDKQDVVWY 593
VW++L+++ VVW+
Sbjct: 576 VWEILNEEYVVWW 538
Score = 70.3 bits (147), Expect(2) = 9e-033
Identities = 42/75 (56%), Positives = 43/75 (57%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS*KGK CI A A TS K TQA P F V KA+
Sbjct: 383 GTKVPSALARQSDFAFAYCKRIGLS*KGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 204
Query: 228 TSRIFPNWEKTAVRD 184
TS I PN E RD
Sbjct: 203 TSSILPN*ENKQ*RD 159
Score = 68.4 bits (143), Expect(2) = 2e-025
Identities = 36/90 (40%), Positives = 50/90 (55%)
Frame = -1 / -3
Query: 403 KGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHI 224
+ ++S I* IL +H F+IEGK LH S++S D + NPSL+ L+SL+S HI
Sbjct: 378 ESSLSFS*TI*LCFCIL*AHWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHI 199
Query: 223 KNFPXXXXXXXXXXXKFFELDLLVEVVDID 134
K P +F LD VEV+D+D
Sbjct: 198 KYPPKLREQTVKRSLQFLFLDPFVEVLDVD 109
>emb|BX820482.1|CNS0A9I0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH39ZC06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 885
Score = 149 bits (320), Expect(2) = 9e-073
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 77 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 256
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 257 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 436
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 437 TANGPSANGPSANNGV 484
Score = 147 bits (316), Expect(2) = 9e-073
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / +2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 515 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 694
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 695 QPLQGFKITPQNPMVISFAKK**ESCFCL 781
Score = 96.4 bits (204), Expect(2) = 8e-033
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / -1
Query: 858 TSGKHCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLK 679
T+ K +++F A MTI F VILK *R +A A SS YST AIPGFASII SL
Sbjct: 789 TTNKQKQDSYHFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLN 610
Query: 678 PGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
PGY K SIM VVSCG+F MLFG I+S
Sbjct: 609 PGYCSKRSCSIMLVVSCGRF*MKSMLFGGIVS 514
Score = 73.5 bits (154), Expect(2) = 2e-025
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = -1 / -3
Query: 811 DDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRL 632
DDH + +FE LK +H L ++ +L++ + +DH L E+RVL EE L HH L
Sbjct: 742 DDHWILGSDFETLKRLHSYGSLNIIFVLYKRDSWFCVDHSYLFESRVLFEEKL*HHACCL 563
Query: 631 VWQVLDKQDVVWY 593
VW++L+++ VVW+
Sbjct: 562 VWEILNEEYVVWW 524
Score = 70.3 bits (147), Expect(2) = 8e-033
Identities = 42/75 (56%), Positives = 43/75 (57%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS*KGK CI A A TS K TQA P F V KA+
Sbjct: 369 GTKVPSALARQSDFAFAYCKRIGLS*KGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 190
Query: 228 TSRIFPNWEKTAVRD 184
TS I PN E RD
Sbjct: 189 TSSILPN*ENKQ*RD 145
Score = 68.4 bits (143), Expect(2) = 2e-025
Identities = 36/90 (40%), Positives = 50/90 (55%)
Frame = -1 / -3
Query: 403 KGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHI 224
+ ++S I* IL +H F+IEGK LH S++S D + NPSL+ L+SL+S HI
Sbjct: 364 ESSLSFS*TI*LCFCIL*AHWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHI 185
Query: 223 KNFPXXXXXXXXXXXKFFELDLLVEVVDID 134
K P +F LD VEV+D+D
Sbjct: 184 KYPPKLREQTVKRSLQFLFLDPFVEVLDVD 95
>emb|BX821303.1|CNS0A92A Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL32ZG07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 874
Score = 149 bits (320), Expect(2) = 9e-073
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 70 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 249
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 250 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 429
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 430 TANGPSANGPSANNGV 477
Score = 147 bits (316), Expect(2) = 9e-073
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / +1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 508 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 687
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 688 QPLQGFKITPQNPMVISFAKK**ESCFCL 774
Score = 96.4 bits (204), Expect(2) = 8e-033
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / -3
Query: 858 TSGKHCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLK 679
T+ K +++F A MTI F VILK *R +A A SS YST AIPGFASII SL
Sbjct: 782 TTNKQKQDSYHFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLN 603
Query: 678 PGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
PGY K SIM VVSCG+F MLFG I+S
Sbjct: 602 PGYCSKRSCSIMLVVSCGRF*MKSMLFGGIVS 507
Score = 73.5 bits (154), Expect(2) = 2e-025
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = -1 / -2
Query: 811 DDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRL 632
DDH + +FE LK +H L ++ +L++ + +DH L E+RVL EE L HH L
Sbjct: 735 DDHWILGSDFETLKRLHSYGSLNIIFVLYKRDSWFCVDHSYLFESRVLFEEKL*HHACCL 556
Query: 631 VWQVLDKQDVVWY 593
VW++L+++ VVW+
Sbjct: 555 VWEILNEEYVVWW 517
Score = 70.3 bits (147), Expect(2) = 8e-033
Identities = 42/75 (56%), Positives = 43/75 (57%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS*KGK CI A A TS K TQA P F V KA+
Sbjct: 362 GTKVPSALARQSDFAFAYCKRIGLS*KGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 183
Query: 228 TSRIFPNWEKTAVRD 184
TS I PN E RD
Sbjct: 182 TSSILPN*ENKQ*RD 138
Score = 68.4 bits (143), Expect(2) = 2e-025
Identities = 36/90 (40%), Positives = 50/90 (55%)
Frame = -1 / -2
Query: 403 KGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHI 224
+ ++S I* IL +H F+IEGK LH S++S D + NPSL+ L+SL+S HI
Sbjct: 357 ESSLSFS*TI*LCFCIL*AHWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHI 178
Query: 223 KNFPXXXXXXXXXXXKFFELDLLVEVVDID 134
K P +F LD VEV+D+D
Sbjct: 177 KYPPKLREQTVKRSLQFLFLDPFVEVLDVD 88
>gb|BT003068.1| Arabidopsis thaliana At2g30260 gene, complete cds
Length = 699
Score = 149 bits (320), Expect(2) = 5e-072
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 16 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 195
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 196 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 375
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 376 TANGPSANGPSANNGV 423
Score = 145 bits (311), Expect(2) = 5e-072
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = +2 / +1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 454 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 633
Query: 764 NNLQSFKITKENQMVITYAKK* 829
LQ FKIT +N MVI++AKK*
Sbjct: 634 QPLQGFKITPQNPMVISFAKK* 699
Score = 91.8 bits (194), Expect(2) = 1e-031
Identities = 49/82 (59%), Positives = 53/82 (64%)
Frame = -2 / -2
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
+F A MTI F VILK *R +A A SS YST AIPGFASII SL PGY K S
Sbjct: 698 HFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLNPGYCSKRSCS 519
Query: 648 IMGVVSCGKFWTNKMLFGTIIS 583
IM VVSCG+F MLFG I+S
Sbjct: 518 IMLVVSCGRF*MKSMLFGGIVS 453
Score = 73.5 bits (154), Expect(2) = 1e-025
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = -1 / -1
Query: 811 DDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRL 632
DDH + +FE LK +H L ++ +L++ + +DH L E+RVL EE L HH L
Sbjct: 681 DDHWILGSDFETLKRLHSYGSLNIIFVLYKRDSWFCVDHSYLFESRVLFEEKL*HHACCL 502
Query: 631 VWQVLDKQDVVWY 593
VW++L+++ VVW+
Sbjct: 501 VWEILNEEYVVWW 463
Score = 70.3 bits (147), Expect(2) = 1e-031
Identities = 42/75 (56%), Positives = 43/75 (57%)
Frame = -2 / -2
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS*KGK CI A A TS K TQA P F V KA+
Sbjct: 308 GTKVPSALARQSDFAFAYCKRIGLS*KGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 129
Query: 228 TSRIFPNWEKTAVRD 184
TS I PN E RD
Sbjct: 128 TSSILPN*ENKQ*RD 84
Score = 68.4 bits (143), Expect(2) = 1e-025
Identities = 36/90 (40%), Positives = 50/90 (55%)
Frame = -1 / -1
Query: 403 KGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHI 224
+ ++S I* IL +H F+IEGK LH S++S D + NPSL+ L+SL+S HI
Sbjct: 303 ESSLSFS*TI*LCFCIL*AHWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHI 124
Query: 223 KNFPXXXXXXXXXXXKFFELDLLVEVVDID 134
K P +F LD VEV+D+D
Sbjct: 123 KYPPKLREQTVKRSLQFLFLDPFVEVLDVD 34
>gb|AY087401.1| Arabidopsis thaliana clone 34995 mRNA, complete sequence
Length = 891
Score = 147 bits (316), Expect(2) = 6e-072
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / +3
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 522 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 701
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 702 QPLQGFKITPQNPMVISFAKK**ESCFCL 788
Score = 146 bits (314), Expect(2) = 6e-072
Identities = 62/136 (45%), Positives = 87/136 (63%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 84 IPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 263
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FP YDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 264 GHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPN 443
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 444 TANGPSANGPSANNGV 491
Score = 102 bits (217), Expect(2) = 7e-034
Identities = 52/92 (56%), Positives = 59/92 (64%)
Frame = -2 / -3
Query: 858 TSGKHCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLK 679
T+ K +++F A MTI F VILK *R +A A SS YST AIPGFASII SL
Sbjct: 796 TTNKQKQDSYHFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLN 617
Query: 678 PGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
PGY K WSIM VVSCG+F MLFG I+S
Sbjct: 616 PGYCSKRSWSIMLVVSCGRF*MKSMLFGGIVS 521
Score = 78.0 bits (164), Expect(2) = 3e-026
Identities = 31/73 (42%), Positives = 47/73 (64%)
Frame = -1 / -2
Query: 811 DDHLVFFCNFEALKVVHGSSGLGLVSILHESNPRLRLDHPNLLEARVLAEEHLEHHGRRL 632
DDH + +FE LK +H L +V +L++ + +DH L E+RVL EE LEHH L
Sbjct: 749 DDHWILGSDFETLKRLHSYGSLNIVFVLYKRDSWFCVDHSYLFESRVLFEEKLEHHACCL 570
Query: 631 VWQVLDKQDVVWY 593
VW++L+++ VVW+
Sbjct: 569 VWEILNEEYVVWW 531
Score = 68.0 bits (142), Expect(2) = 7e-034
Identities = 41/75 (54%), Positives = 42/75 (56%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS KGK CI A A TS K TQA P F V KA+
Sbjct: 376 GTKVPSALARQSDFAFAYCKRIGLSXKGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 197
Query: 228 TSRIFPNWEKTAVRD 184
TS I PN E RD
Sbjct: 196 TSSILPN*ENKQ*RD 152
Score = 66.6 bits (139), Expect(2) = 3e-026
Identities = 35/94 (37%), Positives = 51/94 (54%)
Frame = -1 / -2
Query: 403 KGAISLCYNI*FGLGILNSHSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHI 224
+ ++S I* IL +H F+I GK LH S++S D + NPSL+ L+SL+S HI
Sbjct: 371 ESSLSFS*TI*LCFCIL*AHWFIIXGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHI 192
Query: 223 KNFPXXXXXXXXXXXKFFELDLLVEVVDIDGDVR 122
K P +F LD +EV+D+D +R
Sbjct: 191 KYSPKLREQTVKRSLQFLFLDPFIEVLDVD*MIR 90
>gb|AY142487.1| Arabidopsis thaliana putative spliceosomal protein (U2B)
(At1g06960) mRNA, complete cds
Length = 721
Score = 148 bits (317), Expect(2) = 2e-067
Identities = 60/116 (51%), Positives = 83/116 (71%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 16 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 195
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 463
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ E
Sbjct: 196 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAE 363
Score = 133 bits (286), Expect(2) = 2e-067
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 457 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 636
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 637 GFKITPQNPMVVSFAKK* 690
Score = 80.3 bits (169), Expect(2) = 2e-025
Identities = 45/82 (54%), Positives = 49/82 (59%)
Frame = -2 / -3
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
+F A TI F VILK *R MA SS YST AIPGFASII SL PGY KS S
Sbjct: 689 HFLAKETTIGFCGVILKP*RACMAMED*TSSSYSTNAIPGFASIILISLNPGYCSKSS*S 510
Query: 648 IMGVVSCGKFWTNKMLFGTIIS 583
I+ VS G+ MLFG I+S
Sbjct: 509 IILFVSMGRL*MKSMLFGGIVS 444
Score = 61.6 bits (128), Expect(2) = 2e-025
Identities = 38/75 (50%), Positives = 40/75 (53%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTK PSA SD AY I I LS*KGK CI A +A TS KTT A P V A+
Sbjct: 308 GTKDPSALVT*SDFDFAYCIRIGLS*KGKFCI*RTALLAAVTSVKTTHACPRSLGVFNAT 129
Query: 228 TSRIFPNWEKTAVRD 184
TS PN E RD
Sbjct: 128 TSSNLPN*ENKQ*RD 84
>ref|NM_180605.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960
transcript variant AT1G06960.1 mRNA, complete cds
Length = 937
Score = 148 bits (317), Expect(2) = 3e-067
Identities = 60/116 (51%), Positives = 83/116 (71%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 94 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 273
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 463
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ E
Sbjct: 274 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAE 441
Score = 133 bits (286), Expect(2) = 3e-067
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 535 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 714
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 715 GFKITPQNPMVVSFAKK* 768
Score = 80.3 bits (169), Expect(2) = 2e-025
Identities = 45/82 (54%), Positives = 49/82 (59%)
Frame = -2 / -3
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
+F A TI F VILK *R MA SS YST AIPGFASII SL PGY KS S
Sbjct: 767 HFLAKETTIGFCGVILKP*RACMAMED*TSSSYSTNAIPGFASIILISLNPGYCSKSS*S 588
Query: 648 IMGVVSCGKFWTNKMLFGTIIS 583
I+ VS G+ MLFG I+S
Sbjct: 587 IILFVSMGRL*MKSMLFGGIVS 522
Score = 61.6 bits (128), Expect(2) = 2e-025
Identities = 38/75 (50%), Positives = 40/75 (53%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTK PSA SD AY I I LS*KGK CI A +A TS KTT A P V A+
Sbjct: 386 GTKDPSALVT*SDFDFAYCIRIGLS*KGKFCI*RTALLAAVTSVKTTHACPRSLGVFNAT 207
Query: 228 TSRIFPNWEKTAVRD 184
TS PN E RD
Sbjct: 206 TSSNLPN*ENKQ*RD 162
>ref|NM_100569.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960
transcript variant AT1G06960.2 mRNA, complete cds
Length = 965
Score = 148 bits (317), Expect(2) = 3e-067
Identities = 60/116 (51%), Positives = 83/116 (71%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 95 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 274
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 463
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ E
Sbjct: 275 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAE 442
Score = 133 bits (286), Expect(2) = 3e-067
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 533 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 712
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 713 GFKITPQNPMVVSFAKK* 766
Score = 80.3 bits (169), Expect(2) = 2e-025
Identities = 45/82 (54%), Positives = 49/82 (59%)
Frame = -2 / -3
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
+F A TI F VILK *R MA SS YST AIPGFASII SL PGY KS S
Sbjct: 765 HFLAKETTIGFCGVILKP*RACMAMED*TSSSYSTNAIPGFASIILISLNPGYCSKSS*S 586
Query: 648 IMGVVSCGKFWTNKMLFGTIIS 583
I+ VS G+ MLFG I+S
Sbjct: 585 IILFVSMGRL*MKSMLFGGIVS 520
Score = 61.6 bits (128), Expect(2) = 2e-025
Identities = 38/75 (50%), Positives = 40/75 (53%)
Frame = -2 / -3
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTK PSA SD AY I I LS*KGK CI A +A TS KTT A P V A+
Sbjct: 387 GTKDPSALVT*SDFDFAYCIRIGLS*KGKFCI*RTALLAAVTSVKTTHACPRSLGVFNAT 208
Query: 228 TSRIFPNWEKTAVRD 184
TS PN E RD
Sbjct: 207 TSSNLPN*ENKQ*RD 163
>gb|AY080742.1| Arabidopsis thaliana putative spliceosomal protein (U2B)
(At1g06960) mRNA, complete cds
Length = 981
Score = 148 bits (318), Expect(2) = 4e-067
Identities = 60/116 (51%), Positives = 83/116 (71%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 95 IPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 274
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 463
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ E
Sbjct: 275 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAE 442
Score = 133 bits (284), Expect(2) = 4e-067
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 533 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 712
Query: 776 SFKITKENQMVITYAKK* 829
FKIT N MV+++AKK*
Sbjct: 713 GFKITPRNPMVVSFAKK* 766
Score = 80.3 bits (169), Expect(2) = 2e-025
Identities = 45/82 (54%), Positives = 49/82 (59%)
Frame = -2 / -1
Query: 828 YFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWS 649
+F A TI F VILK *R MA SS YST AIPGFASII SL PGY KS S
Sbjct: 765 HFLAKETTIGFRGVILKP*RACMAMED*TSSSYSTNAIPGFASIILISLNPGYCSKSS*S 586
Query: 648 IMGVVSCGKFWTNKMLFGTIIS 583
I+ VS G+ MLFG I+S
Sbjct: 585 IILFVSMGRL*MKSMLFGGIVS 520
Score = 61.6 bits (128), Expect(2) = 2e-025
Identities = 38/75 (50%), Positives = 40/75 (53%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTK PSA SD AY I I LS*KGK CI A +A TS KTT A P V A+
Sbjct: 387 GTKDPSALVT*SDFDFAYCIRIGLS*KGKFCI*RTALLAAVTSVKTTHACPRSLGVFNAT 208
Query: 228 TSRIFPNWEKTAVRD 184
TS PN E RD
Sbjct: 207 TSSNLPN*ENKQ*RD 163
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 136 bits (291), Expect(5) = 1e-064
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / -3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 30184 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 30005
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 30004 GFKIQQNQMLI 29972
Score = 97.3 bits (206), Expect(5) = 1e-064
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +2 / -1
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA+ A+ +M FPFYDK M
Sbjct: 31185 SLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEM 31024
Score = 83.5 bits (176), Expect(4) = 1e-028
Identities = 39/64 (60%), Positives = 46/64 (71%)
Frame = -2 / +3
Query: 786 ILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNK 607
ILK * +A V +SS STKAIPG ASII TSL P YWQ +I S +GVVS G+FWT +
Sbjct: 29994 ILKP*SPCIATVDCISSANSTKAIPGLASIILTSLNPWYWQNNI*STIGVVS*GRFWTKR 30173
Query: 606 MLFG 595
+LFG
Sbjct: 30174 ILFG 30185
Score = 68.0 bits (142), Expect(5) = 1e-064
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +2 / -2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSE 445
RIQYAKTKSD++AKADGTFVPRE+RKR +EK +
Sbjct: 30746 RIQYAKTKSDVVAKADGTFVPREKRKRHEEKGD 30648
Score = 64.8 bits (135), Expect(4) = 1e-028
Identities = 34/54 (62%), Positives = 36/54 (66%)
Frame = -2 / +2
Query: 345 IVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKASTSRIFPNWEKTAVRD 184
I LS*KGK IL A AD+ SKTTQA PLC KVL A+ S IFPN E TA D
Sbjct: 31025 ISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNANISSIFPN*ENTAFSD 31186
Score = 35.0 bits (70), Expect(4) = 1e-028
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = -2 / +1
Query: 411 RGTKVPSAFAIISDLVLAY*IL 346
RGT VPSA A SD VLAY IL
Sbjct: 30682 RGTNVPSALATTSDFVLAYCIL 30747
Score = 29.0 bits (57), Expect(5) = 1e-064
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2 / -3
Query: 536 QLTQIPIAGGQRVMMPEIIVPNN 604
QL+Q+P GG + MPE P N
Sbjct: 30247 QLSQVPYPGGMKPNMPEAPAPPN 30179
Score = 28.6 bits (56), Expect(5) = 1e-064
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 29987 KPDAHHVCQEI 29955
Score = 28.1 bits (55), Expect(4) = 1e-028
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 828 YFFAYVMTIWF 796
YF AYVM+IWF
Sbjct: 29955 YFLAYVMSIWF 29987
>emb|BX819421.1|CNS0A9VW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB76ZF12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1482
Score = 136 bits (292), Expect(3) = 9e-063
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 1106 ETMPPNNILFIQNLPHETTSMMLQLLFDQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 1285
Query: 764 NNLQSFKITKENQMVITY 817
LQ FKIT +N MV+ +
Sbjct: 1286 QPLQGFKITPQNPMVMLF 1339
Score = 94.1 bits (199), Expect(3) = 2e-032
Identities = 48/76 (63%), Positives = 51/76 (67%)
Frame = -2 / -1
Query: 810 MTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVS 631
MTI F VILK *R +A A SS YST AIPGFASII SL PGYW K SIM VVS
Sbjct: 1332 MTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLNPGYWSKRSCSIMLVVS 1153
Query: 630 CGKFWTNKMLFGTIIS 583
CG+F MLFG I+S
Sbjct: 1152 CGRF*MKSMLFGGIVS 1105
Score = 91.3 bits (193), Expect(3) = 9e-063
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 68 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 247
Query: 296 TEALKRMQGFPFYDKTM 346
A+++MQ FPFYDK M
Sbjct: 248 GHAVRQMQNFPFYDKPM 298
Score = 65.2 bits (136), Expect(3) = 2e-032
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = -1 / -3
Query: 346 HSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFPXXXXXXXXXXXKFFE 167
H F+IEGK LH S++S D + NPSL+ L+SL+S HIK P +F
Sbjct: 298 HWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHIKYPPKLREQTVKRSLQFLF 119
Query: 166 LDLLVEVVDID 134
LD VEV+D+D
Sbjct: 118 LDPFVEVLDVD 86
Score = 61.1 bits (127), Expect(3) = 9e-063
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2 / +2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGV 523
R+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ + G +A GV
Sbjct: 899 RLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGV 1075
Score = 27.6 bits (54), Expect(3) = 2e-032
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY 355
GTKVPSA A SD AY
Sbjct: 960 GTKVPSALARQSDFAFAY 907
>gb|AV824661.1|AV824661 AV824661 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-74-G20 5',
mRNA sequence
Length = 634
Score = 183 bits (394), Expect(4) = 2e-061
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 79 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 258
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 259 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 438
Query: 476 A 478
+
Sbjct: 439 S 441
Score = 96.8 bits (205), Expect(2) = 6e-024
Identities = 50/76 (65%), Positives = 52/76 (68%)
Frame = -2 / -3
Query: 411 RGTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKA 232
RGT VPSA A SD VLAY ILI LS*KGK IL A AD+ SKTTQA PLC KVL A
Sbjct: 374 RGTNVPSALATTSDFVLAYCILISLS*KGKLFILAIAVEADSVLSKTTQACPLCLKVLNA 195
Query: 231 STSRIFPNWEKTAVRD 184
+ S IFPN E TA D
Sbjct: 194 NISSIFPN*ENTAFSD 147
Score = 57.4 bits (119), Expect(4) = 2e-061
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2 / +1
Query: 596 PNNILFVQNLPHETTPMMLQMLFC 667
PNNILFVQNL HETTPM+LQMLFC
Sbjct: 562 PNNILFVQNLXHETTPMVLQMLFC 633
Score = 39.6 bits (80), Expect(2) = 6e-024
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -1 / -2
Query: 667 AEEHLEHHGRRLVWQVLDKQDVVW 596
AE+HL+HH LV +VLDK++++W
Sbjct: 633 AEQHLKHHWSCLVXKVLDKENIIW 562
Score = 31.3 bits (62), Expect(4) = 2e-061
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 493 APPLSQVPYPGGMKPNMPEAPAPPN 567
Score = 24.0 bits (46), Expect(4) = 2e-061
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 466 SAYPGVYGA 492
>gb|AC002338.3| Arabidopsis thaliana chromosome 2 clone T9D9 map m283, complete
sequence
Length = 79272
Score = 147 bits (316), Expect(3) = 6e-058
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / -2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 21581 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 21402
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 21401 QPLQGFKITPQNPMVISFAKK**ESCFCL 21315
Score = 96.4 bits (204), Expect(3) = 7e-026
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = -2 / +1
Query: 858 TSGKHCSGAHYFFAYVMTIWFSFVILKL*RLFMAAVAWVSSPYSTKAIPGFASIIRTSLK 679
T+ K +++F A MTI F VILK *R +A A SS YST AIPGFASII SL
Sbjct: 21307 TTNKQKQDSYHFLAKEMTIGFWGVILKP*RGCIAMEA*TSSSYSTNAIPGFASIILISLN 21486
Query: 678 PGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
PGY K SIM VVSCG+F MLFG I+S
Sbjct: 21487 PGYCSKRSCSIMLVVSCGRF*MKSMLFGGIVS 21582
Score = 82.6 bits (174), Expect(3) = 6e-058
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +2 / -2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL +FSQFG+ILDV+A KT K +GQAWV F +V +A A+++MQ FPFYDK M
Sbjct: 22790 SLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPM 22629
Score = 54.2 bits (112), Expect(3) = 6e-058
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +2 / -2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEK 448
R+QYAK KSD +AKA+GTFVP++++++ +EK K
Sbjct: 22028 RLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKGFK 21927
Score = 51.9 bits (107), Expect(3) = 7e-026
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = -1 / +3
Query: 346 HSFVIEGKALHPLQSLSS*CDIFEDNPSLTFMLQSLESKHIKNFP 212
H F+IEGK LH S++S D + NPSL+ L+SL+S HIK P
Sbjct: 22629 HWFIIEGKILHLTNSMTSSSDFTKSNPSLSSELRSLQSNHIKYPP 22763
Score = 27.6 bits (54), Expect(3) = 7e-026
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2 / +1
Query: 408 GTKVPSAFAIISDLVLAY 355
GTKVPSA A SD AY
Sbjct: 21967 GTKVPSALARQSDFAFAY 22020
>gb|AV826569.1|AV826569 AV826569 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-C01 5',
mRNA sequence
Length = 624
Score = 183 bits (394), Expect(4) = 2e-057
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 83 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 262
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 263 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 442
Query: 476 A 478
+
Sbjct: 443 S 445
Score = 44.1 bits (90), Expect(4) = 2e-057
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMML 652
PNNILFVQNLPHETT M+L
Sbjct: 566 PNNILFVQNLPHETTXMVL 622
Score = 31.3 bits (62), Expect(4) = 2e-057
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +2
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 497 APPLSQVPYPGGMKPNMPEAPAPPN 571
Score = 24.0 bits (46), Expect(4) = 2e-057
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 470 SAYPGVYGA 496
>gb|CB255330.1|CB255330 45-E010699-019-002-J12-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J122Q 5-PRIME, mRNA sequence
Length = 676
Score = 131 bits (280), Expect(2) = 3e-056
Identities = 52/106 (49%), Positives = 76/106 (71%)
Frame = +2 / +3
Query: 206 QFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIA 385
+FG+ILDV+A KT K +GQAWV F +V +A A+++MQ FPFYDK MR+QYAK KSD +A
Sbjct: 144 RFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLA 323
Query: 386 KADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGV 523
KA+GTFVP++++++ +EK E+K++ + G +A GV
Sbjct: 324 KAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGV 461
Score = 111 bits (236), Expect(2) = 3e-056
Identities = 45/60 (75%), Positives = 51/60 (85%)
Frame = +2 / +3
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKP IAFVEY D+ QA AM
Sbjct: 492 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPXIAFVEYEDDVQAFIAM 671
Score = 72.1 bits (151), Expect(2) = 7e-025
Identities = 36/60 (60%), Positives = 39/60 (65%)
Frame = -2 / -1
Query: 762 MAAVAWVSSPYSTKAIPGFASIIRTSLKPGYWQKSIWSIMGVVSCGKFWTNKMLFGTIIS 583
+A A SS YST AI GFASII SL PGY K SIM VVSCG+F MLFG I+S
Sbjct: 670 IAMKA*TSSSYSTNAIXGFASIILISLNPGYCSKRSCSIMLVVSCGRF*MKSMLFGGIVS 491
Score = 67.5 bits (141), Expect(2) = 7e-025
Identities = 39/67 (58%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 408 GTKVPSAFAIISDLVLAY*ILIVLS*KGKPCILFRASVADATSSKTTQA*PLCFKVLKAS 229
GTKVPSA A SD AY I LS*KGK CI A A TS K TQA P F V KA+
Sbjct: 346 GTKVPSALARQSDFAFAYCKRIGLS*KGKFCI*RTA*PAAVTSLKVTQACPRSFGVFKAT 167
Query: 228 TSRIFPN 208
TS I PN
Sbjct: 166 TSSILPN 146
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 111464
Score = 133 bits (286), Expect(3) = 2e-053
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 104260 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 104081
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 104080 GFKITPQNPMVVSFAKK* 104027
Score = 84.5 bits (178), Expect(3) = 2e-053
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = +2 / -1
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL +FSQFG++LDV+A KT K +GQAWVVF +V +A+ A+++MQ FPFYDK M
Sbjct: 105134 SLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPM 104973
Score = 51.5 bits (106), Expect(3) = 2e-053
Identities = 18/31 (58%), Positives = 27/31 (87%)
Frame = +2 / -2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEK 439
RIQYAK+KSD + KA+G+FVP+E++ + +EK
Sbjct: 104689 RIQYAKSKSDYVTKAEGSFVPKEKKMKQEEK 104597
>gb|AV551215.1|AV551215 AV551215 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ122g07R 5', mRNA sequence
Length = 561
Score = 183 bits (394), Expect(4) = 3e-053
Identities = 74/121 (61%), Positives = 90/121 (74%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 44 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 223
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 224 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 403
Query: 476 A 478
+
Sbjct: 404 S 406
Score = 31.3 bits (62), Expect(4) = 3e-053
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / +2
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 458 APPLSQVPYPGGMKPNMPEAPAPPN 532
Score = 29.9 bits (59), Expect(4) = 3e-053
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2 / +2
Query: 596 PNNILFVQNLP 628
PNNILFVQNLP
Sbjct: 527 PNNILFVQNLP 559
Score = 24.0 bits (46), Expect(4) = 3e-053
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 431 SAYPGVYGA 457
>gb|AU235545.1|AU235545 AU235545 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-20-G23 5',
mRNA sequence
Length = 654
Score = 149 bits (320), Expect(2) = 3e-053
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +1
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 91 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 270
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 271 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 450
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 451 TANGPSANGPSANNGV 498
Score = 82.6 bits (174), Expect(2) = 3e-053
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = +2 / +1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEA 706
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+A
Sbjct: 529 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDA 651
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 133 bits (286), Expect(3) = 3e-049
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 2137146 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 2137325
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 2137326 GFKITPQNPMVVSFAKK* 2137379
Score = 84.5 bits (178), Expect(3) = 3e-049
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = +2 / +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM 346
SL +FSQFG++LDV+A KT K +GQAWVVF +V +A+ A+++MQ FPFYDK M
Sbjct: 2136272 SLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPM 2136433
Score = 51.5 bits (106), Expect(3) = 3e-049
Identities = 18/31 (58%), Positives = 27/31 (87%)
Frame = +2 / +3
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEK 439
RIQYAK+KSD + KA+G+FVP+E++ + +EK
Sbjct: 2136717 RIQYAKSKSDYVTKAEGSFVPKEKKMKQEEK 2136809
>gb|AI996034.1|AI996034 701549730 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701549730, mRNA sequence
Length = 597
Score = 136 bits (291), Expect(5) = 8e-045
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / -3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 388 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 209
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 208 GFKIQQNQMLI 176
Score = 40.5 bits (82), Expect(5) = 8e-045
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 392 DGTFVPRERRKRTDEKSEKKQKRE 463
DGTFVPRE+RKR +EK K+K++
Sbjct: 596 DGTFVPREKRKRHEEKGGGKKKKD 525
Score = 28.6 bits (56), Expect(5) = 8e-045
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 191 KPDAHHVCQEI 159
Score = 28.1 bits (55), Expect(5) = 8e-045
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2 / -1
Query: 530 APQLTQIPIAGGQRVMMPE 586
AP L+Q+P GG + MPE
Sbjct: 456 APPLSQVPYPGGMKPNMPE 400
Score = 24.0 bits (46), Expect(5) = 8e-045
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / -1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 483 SAYPGVYGA 457
>gb|AV558034.1|AV558034 AV558034 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ087b06F 3', mRNA sequence
Length = 555
Score = 147 bits (316), Expect(2) = 2e-042
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / -1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 366 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 187
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 186 QPLQGFKITPQNPMVISFAKK**ESCFCL 100
Score = 48.3 bits (99), Expect(2) = 2e-042
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +2 / -1
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGV 523
KSD +AKA+GTFVP++++++ +EK E+K++ + G +A GV
Sbjct: 552 KSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGV 397
>gb|CB074476.1|CB074476 EST01252 Avirulent Peronospora parasitica Infected Forward
Subtracted Library Arabidopsis thaliana cDNA clone
APP-AD1 similar to small nuclear ribonucleoprotein, mRNA
sequence
Length = 473
Score = 132 bits (283), Expect(2) = 3e-039
Identities = 53/113 (46%), Positives = 78/113 (69%)
Frame = +2 / +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
S+ +FG+ILDV+A KT K +GQAWV F +V +A A+++MQ FPFYDK MR+QYAK
Sbjct: 17 SMXGSRKRFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAK 196
Query: 365 TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGV 523
KSD +AKA+GTFVP++++++ +EK E+K++ + G +A GV
Sbjct: 197 AKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPNTANGPSANGPSANNGV 355
Score = 52.8 bits (109), Expect(2) = 3e-039
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQ 670
E + PNNIL +QNLPHETT MMLQ+LF Q
Sbjct: 386 ETMPPNNILLIQNLPHETTSMMLQLLFEQ 472
>gb|BP630450.1|BP630450 BP630450 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-20-D06 3',
mRNA sequence
Length = 425
Score = 136 bits (291), Expect(4) = 5e-039
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / -1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 323 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 144
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 143 GFKIQQNQMLI 111
Score = 31.3 bits (62), Expect(4) = 5e-039
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2 / -1
Query: 530 APQLTQIPIAGGQRVMMPEIIVPNN 604
AP L+Q+P GG + MPE P N
Sbjct: 392 APPLSQVPYPGGMKPNMPEAPAPPN 318
Score = 28.6 bits (56), Expect(4) = 5e-039
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / -3
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 126 KPDAHHVCQEI 94
Score = 24.0 bits (46), Expect(4) = 5e-039
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / -1
Query: 506 TAYPGVYGA 532
+AYPGVYGA
Sbjct: 419 SAYPGVYGA 393
>gb|AV795552.1|AV795552 AV795552 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-C01 3',
mRNA sequence
Length = 438
Score = 136 bits (291), Expect(3) = 3e-035
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 380 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 201
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 200 GFKIQQNQMLI 168
Score = 28.6 bits (56), Expect(3) = 3e-035
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 183 KPDAHHVCQEI 151
Score = 24.9 bits (48), Expect(3) = 3e-035
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / -2
Query: 542 TQIPIAGGQRVMMPEIIVPNN 604
+Q+P GG + MPE P N
Sbjct: 437 SQVPYPGGMKPNMPEAPAPPN 375
>gb|BP796456.1|BP796456 BP796456 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-O20 5',
mRNA sequence
Length = 571
Score = 149 bits (321), Expect = 1e-034
Identities = 63/136 (46%), Positives = 88/136 (64%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 92 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 271
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 272 GHAVRQMQNFPFYDKPMRLQYAKAKSDXLAKAEGTFVPKDKKRKXEEKVERKREDSQRPN 451
Query: 476 AGASQIGMGVTAYPGV 523
G +A GV
Sbjct: 452 TANGPSANGPSANNGV 499
>gb|AU226270.1|AU226270 AU226270 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-20-G23 3',
mRNA sequence
Length = 433
Score = 147 bits (316), Expect = 5e-034
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / -1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 367 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 188
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 187 QPLQGFKITPQNPMVISFAKK**ESCFCL 101
>gb|AV559112.1|AV559112 AV559112 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ111d08F 3', mRNA sequence
Length = 555
Score = 147 bits (316), Expect = 5e-034
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / -2
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 398 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 219
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 218 QPLQGFKITPQNPMVISFAKK**ESCFCL 132
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 147 bits (316), Expect = 5e-034
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +2 / -1
Query: 584 EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
E + PNNILF+QNLPHETT MMLQ+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM
Sbjct: 12912879 ETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAM 12912700
Query: 764 NNLQSFKITKENQMVITYAKK**APEQCL 850
LQ FKIT +N MVI++AKK** CL
Sbjct: 12912699 QPLQGFKITPQNPMVISFAKK**ESCFCL 12912613
Score = 136 bits (291), Expect = 1e-030
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2 / +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 19525526 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 19525705
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 19525706 GFKIQQNQMLI 19525738
>gb|T04343.1|T04343 390 Lambda-PRL2 Arabidopsis thaliana cDNA clone 38C6T7, mRNA
sequence
Length = 394
Score = 96.8 bits (205), Expect(2) = 1e-033
Identities = 40/73 (54%), Positives = 48/73 (65%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 59 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 238
Query: 296 TEALKRMQGFPFY 334
+ A+ +M FPFY
Sbjct: 239 STAIAKMNNFPFY 277
Score = 69.8 bits (146), Expect(2) = 1e-033
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / +1
Query: 323 FPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDE 436
F F K MRIQYAKTKSD++AKADGTFVPRE+ KR +E
Sbjct: 265 FSFLRKEMRIQYAKTKSDVVAKADGTFVPREKXKRHEE 378
>gb|AW004535.1|AW004535 701932082 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701932082, mRNA sequence
Length = 254
Score = 122 bits (262), Expect(2) = 7e-033
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAM 763
PNNILFVQNLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM
Sbjct: 169 PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAM 2
Score = 41.8 bits (85), Expect(2) = 7e-033
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2 / -2
Query: 293 ATEALKRMQGFPFYDKTMRIQYAKTKS 373
A+ A+ +M FPFYDK MRIQYA+ S
Sbjct: 253 ASTAIAKMNNFPFYDKEMRIQYARGTS 173
>gb|AV538871.1|AV538871 AV538871 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ122g07F 3', mRNA sequence
Length = 463
Score = 134 bits (287), Expect(2) = 2e-031
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = +2 / -3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILFVQNLPHET+PM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ
Sbjct: 416 PNNILFVQNLPHETSPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ 237
Query: 776 SFKITKENQMV 808
FKI + ++
Sbjct: 236 GFKIQQRQMLI 204
Score = 24.9 bits (48), Expect(2) = 2e-031
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 796 KPDGHHICEEV 828
K D HH+C+E+
Sbjct: 219 KADAHHVCQEI 187
>gb|BP797968.1|BP797968 BP797968 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-I11 5',
mRNA sequence
Length = 387
Score = 88.6 bits (187), Expect(2) = 2e-031
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +2 / +1
Query: 287 ASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK 424
+SA+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RK
Sbjct: 250 SSASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRK 387
Score = 70.3 bits (147), Expect(2) = 2e-031
Identities = 30/52 (57%), Positives = 33/52 (63%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWV 271
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWV
Sbjct: 77 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWV 232
>gb|AI992475.1|AI992475 701557908 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701557908, mRNA sequence
Length = 542
Score = 133 bits (286), Expect = 7e-030
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 403 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 224
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 223 GFKITPQNPMVVSFAKK* 170
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 133 bits (286), Expect = 7e-030
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 2137299 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 2137478
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 2137479 GFKITPQNPMVVSFAKK* 2137532
>gb|AV781919.1|AV781919 AV781919 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-10-L18 3',
mRNA sequence
Length = 533
Score = 133 bits (284), Expect = 1e-029
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PNNILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ
Sbjct: 433 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 254
Query: 776 SFKITKENQMVITYAKK* 829
FKIT N MV+++AKK*
Sbjct: 253 GFKITPRNPMVVSFAKK* 200
>gb|BP798520.1|BP798520 BP798520 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-07-I21 5',
mRNA sequence
Length = 398
Score = 133 bits (284), Expect = 1e-029
Identities = 54/103 (52%), Positives = 72/103 (69%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQ G+ILDV+A KT K +GQAWV F +V +A
Sbjct: 90 IPPNQSIYIQNLKERIKKEELKRSLYCLFSQLGRILDVVALKTPKLRGQAWVTFSEVTAA 269
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK 424
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP+++++
Sbjct: 270 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKR 398
>gb|AA041158.1|AA041158 24424 CD4-13 Arabidopsis thaliana cDNA clone E2D10T7, mRNA sequence
Length = 612
Score = 128 bits (274), Expect(2) = 3e-029
Identities = 52/103 (50%), Positives = 73/103 (70%)
Frame = +2 / +3
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 27 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 206
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK 424
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+F +++++
Sbjct: 207 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFCSQKKKE 335
Score = 25.8 bits (50), Expect(2) = 3e-029
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2 / +3
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFK 685
PNNI H +M Q F ++PG K
Sbjct: 486 PNNIXXHSKXSHWGDXLMXQXAFWEFPGSK 575
>gb|BP594312.1|BP594312 BP594312 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-G21 3',
mRNA sequence
Length = 442
Score = 110 bits (234), Expect(3) = 7e-029
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYG 736
PNNILFVQNLPHETTP++LQMLFCQY GFKEVRMIEAKPGIAFVE+G
Sbjct: 375 PNNILFVQNLPHETTPIVLQMLFCQYQGFKEVRMIEAKPGIAFVEFG 235
Score = 29.5 bits (58), Expect(3) = 7e-029
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2 / -2
Query: 533 PQLTQIPIAGGQRVMMPEIIVPNN 604
P L+Q+P GG + MPE P N
Sbjct: 441 PPLSQVPYPGGMKPNMPEAPAPPN 370
Score = 28.6 bits (56), Expect(3) = 7e-029
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 796 KPDGHHICEEV 828
KPD HH+C+E+
Sbjct: 177 KPDAHHVCQEI 145
>gb|BP624813.1|BP624813 BP624813 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-41-J20 3',
mRNA sequence
Length = 413
Score = 129 bits (277), Expect = 1e-028
Identities = 53/78 (67%), Positives = 65/78 (83%)
Frame = +2 / -2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
P+NILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ A+ LQ
Sbjct: 403 PDNILFIHNLPLETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAIQALQ 224
Query: 776 SFKITKENQMVITYAKK* 829
FKIT +N MV+++AKK*
Sbjct: 223 GFKITPQNPMVVSFAKK* 170
>gb|BP810316.1|BP810316 BP810316 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-25-I12 5',
mRNA sequence
Length = 419
Score = 128 bits (274), Expect = 3e-028
Identities = 50/87 (57%), Positives = 69/87 (79%)
Frame = +2 / +3
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
SL +FSQ G+ILDV+A KT K +GQAWV F +V + A+++MQ FPFYDK MR+QYAK
Sbjct: 159 SLYCLFSQLGRILDVVALKTPKLRGQAWVTFSEVTAGGHAVRQMQNFPFYDKPMRLQYAK 338
Query: 365 TKSDIIAKADGTFVPRERRKRTDEKSE 445
KSD +AKA+GTFVP++++++ +EK E
Sbjct: 339 AKSDGLAKAEGTFVPKDKKRKQEEKVE 419
>gb|BP566944.1|BP566944 BP566944 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-55-O07 3',
mRNA sequence
Length = 419
Score = 127 bits (272), Expect = 6e-028
Identities = 51/78 (65%), Positives = 65/78 (83%)
Frame = +2 / -1
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
P++ILF+ NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ A+ LQ
Sbjct: 413 PDHILFIHNLPIETNSMMLQLLFDQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAIQALQ 234
Query: 776 SFKITKENQMVITYAKK* 829
FK+T +N MV+++AKK*
Sbjct: 233 GFKVTPQNPMVVSFAKK* 180
>gb|AV821462.1|AV821462 AV821462 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-10-L18 5',
mRNA sequence
Length = 406
Score = 121 bits (258), Expect = 5e-026
Identities = 50/101 (49%), Positives = 67/101 (66%)
Frame = +2 / +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 95 IPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 274
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER 418
+ A+++M FPFYDK MR QYAK+KSD + KA+G F + +
Sbjct: 275 SNAVRQMXNFPFYDKPMRXQYAKSKSDYVTKAEGFFCSKRK 397
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,887,512,674
Number of Sequences: 1013581
Number of extensions: 25549121
Number of successful extensions: 139652
Number of sequences better than 1.0e-020: 74
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 75278295111
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)