TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 86 1e-031
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 93 3e-029
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 93 3e-029
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 93 3e-029
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 109 1e-028
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 109 1e-028
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 109 1e-028
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 109 1e-028
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 109 1e-028
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 50 1e-027
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 109 1e-027
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 109 1e-027
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 109 1e-027
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 109 1e-027
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 109 1e-027
emb|AX589887.1| Sequence 69 from Patent WO02081695 109 1e-027
emb|AX652050.1| Sequence 948 from Patent WO03000898 109 1e-027
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 109 1e-027
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 50 1e-027
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 50 1e-027
gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADI... 109 7e-023
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 85.8 bits (181), Expect(4) = 1e-031
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSGTAFG +A G++ LR G + I + +V C + G V F V++GS FAVLV
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLV 576
Query: 284 EYENGDGDVVQVDLME 331
Y NGDG++ +++L +
Sbjct: 577 AYVNGDGEIGRIELKQ 624
Score = 44.6 bits (91), Expect(4) = 1e-031
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIR 427
+W MSQSWG++W+LD + L+ P S+R
Sbjct: 640 KWLSMSQSWGAVWKLDVSSPLRAPLSLR 723
Score = 44.1 bits (90), Expect(4) = 1e-031
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +SGKT+VA +VIP NW+P Y+S V +
Sbjct: 727 TSLESGKTVVASNVIPANWQPGAIYKSNVNF 819
Score = 21.7 bits (41), Expect(4) = 1e-031
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / +1
Query: 32 AACSGRTETVVITD 73
+ACS TVVITD
Sbjct: 325 SACSKNPVTVVITD 366
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 92.7 bits (196), Expect(4) = 3e-029
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2 / +3
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P H DLSG A G LAKPG+ D LR AG+I + + R C + G + F ++ G+ Y +
Sbjct: 429 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISF 608
Query: 278 LVEYENGDGDVVQVDL 325
+VEYENGDGD+ V++
Sbjct: 609 VVEYENGDGDLSNVEI 656
Score = 41.8 bits (85), Expect(4) = 3e-029
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +S K +VA +VIP NW+P+ YRSIV +
Sbjct: 759 TSGESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 25.8 bits (50), Expect(4) = 3e-029
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2 / +3
Query: 356 MSQSWGSIWRLDSNHRLQPPFSIR 427
M + ++W+++S L+ PF+IR
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIR 755
Score = 25.4 bits (49), Expect(4) = 3e-029
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +3
Query: 29 HAACSGRTETVVITD 73
H ACSG TV ITD
Sbjct: 354 HPACSGSPITVTITD 398
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 92.7 bits (196), Expect(4) = 3e-029
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2 / +3
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P H DLSG A G LAKPG+ D LR AG+I + + R C + G + F ++ G+ Y +
Sbjct: 429 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISF 608
Query: 278 LVEYENGDGDVVQVDL 325
+VEYENGDGD+ V++
Sbjct: 609 VVEYENGDGDLSNVEI 656
Score = 41.8 bits (85), Expect(4) = 3e-029
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +S K +VA +VIP NW+P+ YRSIV +
Sbjct: 759 TSGESHKVIVAYNVIPANWKPDESYRSIVNF 851
Score = 25.8 bits (50), Expect(4) = 3e-029
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2 / +3
Query: 356 MSQSWGSIWRLDSNHRLQPPFSIR 427
M + ++W+++S L+ PF+IR
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIR 755
Score = 25.4 bits (49), Expect(4) = 3e-029
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +3
Query: 29 HAACSGRTETVVITD 73
H ACSG TV ITD
Sbjct: 354 HPACSGSPITVTITD 398
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 92.7 bits (196), Expect(4) = 3e-029
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2 / +2
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P H DLSG A G LAKPG+ D LR AG+I + + R C + G + F ++ G+ Y +
Sbjct: 398 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISF 577
Query: 278 LVEYENGDGDVVQVDL 325
+VEYENGDGD+ V++
Sbjct: 578 VVEYENGDGDLSNVEI 625
Score = 41.8 bits (85), Expect(4) = 3e-029
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +S K +VA +VIP NW+P+ YRSIV +
Sbjct: 728 TSGESHKVIVAYNVIPANWKPDESYRSIVNF 820
Score = 25.8 bits (50), Expect(4) = 3e-029
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2 / +2
Query: 356 MSQSWGSIWRLDSNHRLQPPFSIR 427
M + ++W+++S L+ PF+IR
Sbjct: 653 MQEMRSAVWKVNSGSALRGPFNIR 724
Score = 25.4 bits (49), Expect(4) = 3e-029
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +2
Query: 29 HAACSGRTETVVITD 73
H ACSG TV ITD
Sbjct: 323 HPACSGSPITVTITD 367
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 109 bits (233), Expect(2) = 1e-028
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +GKTL A DV+P NW P Y S + +S
Sbjct: 784 TTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 879
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 109 bits (233), Expect(2) = 1e-028
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +3
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 644
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 645 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 743
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +GKTL A DV+P NW P Y S + +S
Sbjct: 789 TTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 884
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 109 bits (233), Expect(2) = 1e-028
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSMLV 628
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2 / +2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +GKTL A DV+P NW P Y S + +S
Sbjct: 773 TTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 868
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 109 bits (233), Expect(2) = 1e-028
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 639
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 640 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +GKTL A DV+P NW P Y S + +S
Sbjct: 784 TTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 879
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 109 bits (233), Expect(2) = 1e-028
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 543
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 544 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 642
Score = 39.1 bits (79), Expect(2) = 1e-028
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +GKTL A DV+P NW P Y S + +S
Sbjct: 688 TTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 783
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 49.6 bits (102), Expect(4) = 1e-027
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2 / +2
Query: 200 RVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLME 331
RV C + G V F V++GS FAVLV Y NGDG++ +++L +
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 8669515
Score = 44.6 bits (91), Expect(4) = 1e-027
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +2
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIR 427
+W MSQSWG++W+LD + L+ P S+R
Sbjct: 8669531 KWLSMSQSWGAVWKLDVSSPLRAPLSLR 8669614
Score = 44.1 bits (90), Expect(4) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +SGKT+VA +VIP NW+P Y+S V +
Sbjct: 8669618 TSLESGKTVVASNVIPANWQPGAIYKSNVNF 8669710
Score = 41.4 bits (84), Expect(4) = 1e-027
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFAR 202
HFDLSGTAFG +A G++ LR G + I + +
Sbjct: 8669171 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 8669269
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 773 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 868
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 628
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 629 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 773 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 868
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +3
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 626
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 627 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 725
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 771 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 866
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +3
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 530
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 531 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 629
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 675 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 770
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 709 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 804
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 709 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 804
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 709 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 804
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFG +A PG N +R G+++I + R C++ G + FHV GST + ++L+
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLI 564
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
EYE+G+GD+ + + + ++ W M WG+ W
Sbjct: 565 EYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 35.9 bits (72), Expect(2) = 1e-027
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T + KTL A DVIP NW P Y S + +S
Sbjct: 709 TTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 804
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 49.6 bits (102), Expect(4) = 1e-027
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2 / +1
Query: 200 RVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLME 331
RV C + G V F V++GS FAVLV Y NGDG++ +++L +
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 107271
Score = 44.6 bits (91), Expect(4) = 1e-027
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIR 427
+W MSQSWG++W+LD + L+ P S+R
Sbjct: 107287 KWLSMSQSWGAVWKLDVSSPLRAPLSLR 107370
Score = 44.1 bits (90), Expect(4) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +SGKT+VA +VIP NW+P Y+S V +
Sbjct: 107374 TSLESGKTVVASNVIPANWQPGAIYKSNVNF 107466
Score = 41.4 bits (84), Expect(4) = 1e-027
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFAR 202
HFDLSGTAFG +A G++ LR G + I + +
Sbjct: 106927 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 107025
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 49.6 bits (102), Expect(4) = 1e-027
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2 / +3
Query: 200 RVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLME 331
RV C + G V F V++GS FAVLV Y NGDG++ +++L +
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 25718
Score = 44.6 bits (91), Expect(4) = 1e-027
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIR 427
+W MSQSWG++W+LD + L+ P S+R
Sbjct: 25734 KWLSMSQSWGAVWKLDVSSPLRAPLSLR 25817
Score = 44.1 bits (90), Expect(4) = 1e-027
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +SGKT+VA +VIP NW+P Y+S V +
Sbjct: 25821 TSLESGKTVVASNVIPANWQPGAIYKSNVNF 25913
Score = 41.4 bits (84), Expect(4) = 1e-027
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2 / +3
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFAR 202
HFDLSGTAFG +A G++ LR G + I + +
Sbjct: 25374 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 25472
>gb|CF652567.1|CF652567 63-L020523-066-003-M15-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M153Q 5-PRIME, mRNA sequence
Length = 816
Score = 109 bits (233), Expect = 7e-023
Identities = 40/93 (43%), Positives = 58/93 (62%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG FGRLA G + LR G+I + + R C++ G + FHV EGST + ++LV
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLV 628
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+G+GD+ + + + AR W M WG+ W
Sbjct: 629 EFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 733,014,809
Number of Sequences: 1013581
Number of extensions: 7781683
Number of successful extensions: 97704
Number of sequences better than 1.0e-020: 22
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)