TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK118343.1| Arabidopsis thaliana At3g52600 mRNA for put... 133 4e-030
ref|NM_115120.2| Arabidopsis thaliana hydrolase, hydrolyzin... 133 4e-030
ref|NM_001035770.1| Arabidopsis thaliana hydrolase, hydroly... 133 4e-030
gb|AW004460.1|AW004460 701931666 A. thaliana, mixed source ... 132 1e-029
gb|AV561590.1|AV561590 AV561590 Arabidopsis thaliana green ... 130 5e-029
dbj|AB049617.1| Arabidopsis thaliana AtFruct6 mRNA for beta... 130 5e-029
gb|AY084792.1| Arabidopsis thaliana clone 118038 mRNA, comp... 130 5e-029
ref|NM_129177.2| Arabidopsis thaliana hydrolase, hydrolyzin... 130 5e-029
emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome ... 95 1e-025
emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome ... 95 1e-025
gb|U11033.1|ATU11033 Arabidopsis thaliana Columbia invertas... 95 2e-025
gb|AC006921.6| Arabidopsis thaliana chromosome 2 clone F2H1... 88 2e-024
gb|AC007135.8| Arabidopsis thaliana chromosome 2 clone F9C2... 88 2e-024
gb|CC795055.1|CC795055 SALK_068113.51.20.x Arabidopsis thal... 95 1e-023
dbj|AB029310.1| Arabidopsis thaliana AtFruct5 mRNA for beta... 107 4e-022
dbj|AK176675.1| Arabidopsis thaliana mRNA for beta-fructofu... 107 4e-022
ref|NM_104385.2| Arabidopsis thaliana ATFRUCT5 (BETA-FRUCTO... 107 4e-022
gb|BP648570.1|BP648570 BP648570 RAFL19 Arabidopsis thaliana... 104 3e-021
>dbj|AK118343.1| Arabidopsis thaliana At3g52600 mRNA for putative
beta-fructofuranosidase, complete cds, clone:
RAFL19-61-I02
Length = 1997
Score = 133 bits (286), Expect = 4e-030
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD + GKI+LRSLID SVVESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1593 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1772
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VTV L AW M+KPL
Sbjct: 1773 NNGSQPVTVESLNAWNMQKPL 1835
>ref|NM_115120.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT3G52600 transcript variant AT3G52600.1 mRNA, complete
cds
Length = 1996
Score = 133 bits (286), Expect = 4e-030
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD + GKI+LRSLID SVVESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1593 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1772
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VTV L AW M+KPL
Sbjct: 1773 NNGSQPVTVESLNAWNMQKPL 1835
>ref|NM_001035770.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT3G52600 transcript variant AT3G52600.2 mRNA, complete
cds
Length = 2320
Score = 133 bits (286), Expect = 4e-030
Identities = 56/81 (69%), Positives = 64/81 (79%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD + GKI+LRSLID SVVESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 1626 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 1805
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VTV L AW M+KPL
Sbjct: 1806 NNGSQPVTVESLNAWNMQKPL 1868
>gb|AW004460.1|AW004460 701931666 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701931666, mRNA sequence
Length = 387
Score = 132 bits (282), Expect = 1e-029
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD + GKI+LRSLID SVVESFGA GKT I SRVYP+ AVG+ AHL+VF
Sbjct: 282 MYKPSFAGFVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVF 103
Query: 243 NNGEVDVTVSGLTAWEMKKP 302
NNG VTV L AW M+KP
Sbjct: 102 NNGSQPVTVESLNAWNMQKP 43
>gb|AV561590.1|AV561590 AV561590 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ154b06F 3', mRNA sequence
Length = 571
Score = 130 bits (278), Expect = 5e-029
Identities = 54/81 (66%), Positives = 64/81 (79%)
Frame = +3 / -3
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD D++ G+I+LRSLID SVVESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 488 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 309
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VT+ L AW M +PL
Sbjct: 308 NNGTQTVTIESLNAWNMDRPL 246
>dbj|AB049617.1| Arabidopsis thaliana AtFruct6 mRNA for beta-fructofuranosidase,
complete cds
Length = 1776
Score = 130 bits (278), Expect = 5e-029
Identities = 54/81 (66%), Positives = 64/81 (79%)
Frame = +3 / +1
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD D++ G+I+LRSLID SVVESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1510 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1689
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VT+ L AW M +PL
Sbjct: 1690 NNGTQTVTIESLNAWNMDRPL 1752
>gb|AY084792.1| Arabidopsis thaliana clone 118038 mRNA, complete sequence
Length = 2079
Score = 130 bits (278), Expect = 5e-029
Identities = 54/81 (66%), Positives = 64/81 (79%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD D++ G+I+LRSLID SVVESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1595 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1774
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VT+ L AW M +PL
Sbjct: 1775 NNGTQTVTIESLNAWNMDRPL 1837
>ref|NM_129177.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT2G36190 mRNA, complete cds
Length = 2082
Score = 130 bits (278), Expect = 5e-029
Identities = 54/81 (66%), Positives = 64/81 (79%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
+YKP+FAGFVD D++ G+I+LRSLID SVVESFGA GKT I SRVYP AV ++AHLYVF
Sbjct: 1595 MYKPSFAGFVDVDMADGRISLRSLIDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVF 1774
Query: 243 NNGEVDVTVSGLTAWEMKKPL 305
NNG VT+ L AW M +PL
Sbjct: 1775 NNGTQTVTIESLNAWNMDRPL 1837
>emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome 3, BAC clone F3C22
Length = 100028
Score = 94.5 bits (200), Expect(2) = 1e-025
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3 / -2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VTV L AW M+KPL
Sbjct: 27754 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 27584
Score = 43.7 bits (89), Expect(2) = 1e-025
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGKITLRSLI 137
+YKP+FAGFVD + GKI+LRSL+
Sbjct: 27910 MYKPSFAGFVDVGLLDGKISLRSLV 27836
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6
Length = 93443
Score = 94.5 bits (200), Expect(2) = 1e-025
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3 / -1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VTV L AW M+KPL
Sbjct: 89471 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 89301
Score = 43.7 bits (89), Expect(2) = 1e-025
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISSGKITLRSLI 137
+YKP+FAGFVD + GKI+LRSL+
Sbjct: 89627 MYKPSFAGFVDVGLLDGKISLRSLV 89553
>gb|U11033.1|ATU11033 Arabidopsis thaliana Columbia invertase gene, complete cds
Length = 2571
Score = 94.5 bits (200), Expect(2) = 2e-025
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3 / +2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VTV L AW M+KPL
Sbjct: 2294 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 2464
Score = 43.7 bits (89), Expect(2) = 2e-025
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGKITLRSLI 137
+YKP+FAGFVD + GKI+LRSL+
Sbjct: 2138 MYKPSFAGFVDVGLLDGKISLRSLV 2212
>gb|AC006921.6| Arabidopsis thaliana chromosome 2 clone F2H17 map g6825, complete
sequence
Length = 91354
Score = 88.1 bits (186), Expect(2) = 2e-024
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +3 / +1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP AV ++AHLYVFNNG VT+ L AW M +PL
Sbjct: 88543 IDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVFNNGTQTVTIESLNAWNMDRPL 88713
Score = 46.4 bits (95), Expect(2) = 2e-024
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +3 / +3
Query: 63 LYKPTFAGFVDADISSGKITLRSLI 137
+YKP+FAGFVD D++ G+I+LRSL+
Sbjct: 88383 MYKPSFAGFVDVDMADGRISLRSLV 88457
>gb|AC007135.8| Arabidopsis thaliana chromosome 2 clone F9C22 map g6825, complete
sequence
Length = 31733
Score = 88.1 bits (186), Expect(2) = 2e-024
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +3 / -3
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP AV ++AHLYVFNNG VT+ L AW M +PL
Sbjct: 25539 IDHSVVESFGALGKTVITSRVYPVKAVKENAHLYVFNNGTQTVTIESLNAWNMDRPL 25369
Score = 46.4 bits (95), Expect(2) = 2e-024
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGKITLRSLI 137
+YKP+FAGFVD D++ G+I+LRSL+
Sbjct: 25699 MYKPSFAGFVDVDMADGRISLRSLV 25625
>gb|CC795055.1|CC795055 SALK_068113.51.20.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_068113.51.20.x,
DNA sequence
Length = 444
Score = 94.5 bits (200), Expect(2) = 1e-023
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3 / +2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPL 305
ID SVVESFGA GKT I SRVYP+ AVG+ AHL+VFNNG VTV L AW M+KPL
Sbjct: 149 IDHSVVESFGAKGKTVITSRVYPTKAVGEKAHLFVFNNGSQPVTVESLNAWNMQKPL 319
Score = 37.3 bits (75), Expect(2) = 1e-023
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3 / +2
Query: 72 PTFAGFVDADISSGKITLRSLI 137
P+FAGFVD + GKI+LRSL+
Sbjct: 2 PSFAGFVDVGLLDGKISLRSLV 67
>dbj|AB029310.1| Arabidopsis thaliana AtFruct5 mRNA for beta-fructofuranosidase,
complete cds
Length = 1934
Score = 107 bits (228), Expect = 4e-022
Identities = 43/82 (52%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 69 KPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNN 248
K TF FV D S I+LR+LID S+VES+G GG+TCI SRVYP +A+G++A+L+VFN
Sbjct: 1502 KSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRVYPKLAIGENANLFVFNK 1681
Query: 249 GEVDVTVSGLTAWEMKKPLMNG 314
G V + L+AW +K +NG
Sbjct: 1682 GTQSVDILTLSAWSLKSAQING 1747
>dbj|AK176675.1| Arabidopsis thaliana mRNA for beta-fructofuranosidase (AtFruct5),
complete cds, clone: RAFL25-21-E09
Length = 1926
Score = 107 bits (228), Expect = 4e-022
Identities = 43/82 (52%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 69 KPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNN 248
K TF FV D S I+LR+LID S+VES+G GG+TCI SRVYP +A+G++A+L+VFN
Sbjct: 1489 KSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRVYPKLAIGENANLFVFNK 1668
Query: 249 GEVDVTVSGLTAWEMKKPLMNG 314
G V + L+AW +K +NG
Sbjct: 1669 GTQSVDILTLSAWSLKSAQING 1734
>ref|NM_104385.2| Arabidopsis thaliana ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase,
hydrolyzing O-glycosyl compounds AT1G55120 (ATFRUCT5)
mRNA, complete cds
Length = 1915
Score = 107 bits (228), Expect = 4e-022
Identities = 43/82 (52%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 69 KPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNN 248
K TF FV D S I+LR+LID S+VES+G GG+TCI SRVYP +A+G++A+L+VFN
Sbjct: 1499 KSTFGAFVAIDPSHQTISLRTLIDHSIVESYGGGGRTCITSRVYPKLAIGENANLFVFNK 1678
Query: 249 GEVDVTVSGLTAWEMKKPLMNG 314
G V + L+AW +K +NG
Sbjct: 1679 GTQSVDILTLSAWSLKSAQING 1744
>gb|BP648570.1|BP648570 BP648570 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-79-M14 3',
mRNA sequence
Length = 401
Score = 104 bits (222), Expect = 3e-021
Identities = 45/64 (70%), Positives = 50/64 (78%)
Frame = +3 / -1
Query: 114 KITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEM 293
KI+LRSLID SVVESFGA GKT I SRVYP+ VG+ AHL+VFNNG VTV L AW M
Sbjct: 401 KISLRSLIDHSVVESFGAKGKTVITSRVYPTKPVGEKAHLFVFNNGSQPVTVESLNAWNM 222
Query: 294 KKPL 305
+KPL
Sbjct: 221 QKPL 210
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,129,914,511
Number of Sequences: 1013581
Number of extensions: 14053579
Number of successful extensions: 133263
Number of sequences better than 1.0e-020: 18
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 40546266940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)