TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_104080.1| Arabidopsis thaliana O-methyltransferase A... 89 3e-021
ref|NM_202275.1| Arabidopsis thaliana O-methyltransferase A... 89 3e-021
>ref|NM_104080.1| Arabidopsis thaliana O-methyltransferase AT1G51990 transcript
variant AT1G51990.1 mRNA, complete cds
Length = 1092
Score = 88.6 bits (187), Expect(2) = 3e-021
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -1 / +1
Query: 826 GTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHW 647
G+ + +P IK DLP +++ P V ++GGDMF IPR +++L+K +LH W
Sbjct: 628 GSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDW 807
Query: 646 SDEDCVKILANCRKAIP 596
+DE CV+IL NC+KA+P
Sbjct: 808 NDEKCVEILKNCKKALP 858
Score = 35.4 bits (71), Expect(2) = 3e-021
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1 / +1
Query: 496 MMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
M L GG++R ++ DL ++AGF K++ + ++E+YP
Sbjct: 958 MSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYWIIELYP 1086
>ref|NM_202275.1| Arabidopsis thaliana O-methyltransferase AT1G51990 transcript
variant AT1G51990.2 mRNA, complete cds
Length = 1092
Score = 88.6 bits (187), Expect(2) = 3e-021
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -1 / +1
Query: 826 GTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHW 647
G+ + +P IK DLP +++ P V ++GGDMF IPR +++L+K +LH W
Sbjct: 628 GSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDW 807
Query: 646 SDEDCVKILANCRKAIP 596
+DE CV+IL NC+KA+P
Sbjct: 808 NDEKCVEILKNCKKALP 858
Score = 35.4 bits (71), Expect(2) = 3e-021
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1 / +1
Query: 496 MMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
M L GG++R ++ DL ++AGF K++ + ++E+YP
Sbjct: 958 MSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYWIIELYP 1086
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,838,184,604
Number of Sequences: 1013581
Number of extensions: 26121434
Number of successful extensions: 156760
Number of sequences better than 1.0e-020: 2
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 55399444650
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)