TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR750436.1|DR750436 56-L022342-065-009-H07-SeLA MPIZ-ADI... 221 1e-056
gb|U83245.1|ATU83245 Arabidopsis thaliana auxin response fa... 221 2e-056
emb|AX507306.1| Sequence 2001 from Patent WO0216655 221 2e-056
gb|BT002748.1| Arabidopsis thaliana clone C105458 auxin res... 221 2e-056
ref|NM_104668.2| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 221 2e-056
ref|NM_179499.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 221 2e-056
ref|NM_001036131.1| Arabidopsis thaliana ARF1 (AUXIN RESPON... 221 2e-056
emb|BX815613.1|CNS0ADXB Arabidopsis thaliana Full-length cD... 218 2e-055
gb|AY133723.1| Arabidopsis thaliana auxin response factor 1... 217 2e-055
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 161 7e-053
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 161 7e-053
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 161 7e-053
emb|CS165494.1| Sequence 2 from Patent WO2005085453 161 7e-053
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 161 7e-053
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 161 7e-053
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 161 7e-053
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 161 7e-053
emb|CS165547.1| Sequence 55 from Patent WO2005085453 161 7e-053
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 161 7e-053
emb|CS165497.1| Sequence 5 from Patent WO2005085453 128 8e-048
emb|CS165548.1| Sequence 56 from Patent WO2005085453 128 8e-048
ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 121 6e-045
ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPO... 121 6e-045
gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At... 121 6e-045
gb|BX837695.1|BX837695 BX837695 Arabidopsis thaliana Hormon... 121 6e-045
gb|AV822685.1|AV822685 AV822685 RAFL5 Arabidopsis thaliana ... 174 3e-042
ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 82 1e-041
gb|BX837073.1|BX837073 BX837073 Arabidopsis thaliana Adult ... 79 3e-041
ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription ... 77 2e-040
gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mR... 77 2e-040
gb|AY059746.1| Arabidopsis thaliana auxin response factor A... 77 2e-040
emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cD... 77 2e-040
gb|AY091392.1| Arabidopsis thaliana putative auxin response... 77 2e-040
gb|AF334717.1| Arabidopsis thaliana auxin response factor A... 77 2e-040
gb|AV528157.1|AV528157 AV528157 Arabidopsis thaliana aboveg... 161 1e-038
gb|AV528415.1|AV528415 AV528415 Arabidopsis thaliana aboveg... 161 1e-038
gb|AV529218.1|AV529218 AV529218 Arabidopsis thaliana aboveg... 161 1e-038
gb|BP817425.1|BP817425 BP817425 RAFL19 Arabidopsis thaliana... 160 3e-038
ref|NM_001036629.1| Arabidopsis thaliana ARF9 (AUXIN RESPON... 76 1e-037
ref|NM_118530.3| Arabidopsis thaliana ARF9 (AUXIN RESPONSE ... 76 1e-037
emb|BX828437.1|CNS0A2BW Arabidopsis thaliana Full-length cD... 76 1e-037
gb|AF082176.1|AF082176 Arabidopsis thaliana auxin response ... 76 1e-037
gb|AF344312.1| Arabidopsis thaliana clone C00029 (e) auxin ... 76 1e-037
gb|BT015544.1| Arabidopsis thaliana At4g23980 mRNA sequence 76 1e-037
gb|BX838143.1|BX838143 BX838143 Arabidopsis thaliana Hormon... 76 2e-036
gb|CF651697.1|CF651697 05-L020577-066-004-I01-SP6P MPIZ-ADI... 72 3e-036
gb|DN604565.1|DN604565 JCAt4g23980 Arabidopsis Gateway cDNA... 74 3e-036
emb|CS165493.1| Sequence 1 from Patent WO2005085453 79 2e-035
emb|CS165496.1| Sequence 4 from Patent WO2005085453 79 2e-035
gb|AC006418.4| Arabidopsis thaliana chromosome 2 clone F13A... 74 3e-034
gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C... 74 3e-034
dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosom... 79 2e-033
ref|NM_103250.1| Arabidopsis thaliana ARF14; transcription ... 116 3e-033
gb|BP807900.1|BP807900 BP807900 RAFL16 Arabidopsis thaliana... 92 3e-033
ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE ... 79 8e-033
gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response ... 79 8e-033
gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5... 79 8e-033
ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 107 2e-032
gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) m... 107 2e-032
ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 107 2e-032
ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 107 2e-032
gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response ... 107 2e-032
gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5... 107 2e-032
emb|AX505548.1| Sequence 243 from Patent WO0216655 107 2e-032
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 68 4e-032
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 68 4e-032
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 68 4e-032
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 68 4e-032
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 68 4e-032
emb|AX506835.1| Sequence 1530 from Patent WO0216655 68 4e-032
emb|AX651787.1| Sequence 640 from Patent WO03000898 68 4e-032
gb|BX839096.1|BX839096 BX839096 Arabidopsis thaliana Adult ... 68 4e-032
gb|BX840815.1|BX840815 BX840815 Arabidopsis thaliana Flower... 68 4e-032
gb|AY669792.1| Arabidopsis thaliana clone C105347 ARF12 (At... 115 4e-032
ref|NM_103153.2| Arabidopsis thaliana ARF12; transcription ... 115 4e-032
ref|NM_103164.2| Arabidopsis thaliana ARF21; transcription ... 114 1e-031
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 79 1e-031
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 79 1e-031
ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE ... 66 1e-031
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 79 1e-031
gb|AY080832.1| Arabidopsis thaliana auxin response factor A... 66 1e-031
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 79 1e-031
gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response ... 66 1e-031
gb|AY113977.1| Arabidopsis thaliana auxin response factor A... 66 1e-031
gb|AF344313.1| Arabidopsis thaliana auxin response factor 4... 66 1e-031
ref|NM_101840.2| Arabidopsis thaliana MP (MONOPTEROS); tran... 70 1e-030
gb|BT002050.1| Arabidopsis thaliana transcription factor (A... 70 1e-030
gb|AF037229.1|AF037229 Arabidopsis thaliana transcription f... 70 1e-030
emb|AX505602.1| Sequence 297 from Patent WO0216655 70 1e-030
emb|AX651413.1| Sequence 208 from Patent WO03000898 70 1e-030
gb|AF334716.1| Arabidopsis thaliana clone C00027 (h) auxin ... 70 1e-030
gb|BT008805.1| Arabidopsis thaliana At1g19850 gene, complet... 70 1e-030
gb|U79557.1|U79557 Arabidopsis thaliana IAA24 (IAA24) mRNA,... 70 1e-030
gb|AY669795.1| Arabidopsis thaliana clone C00610 ARF20 (At1... 112 2e-030
ref|NM_103222.2| Arabidopsis thaliana ARF20; transcription ... 112 2e-030
gb|AV827554.1|AV827554 AV827554 RAFL9 Arabidopsis thaliana ... 68 6e-030
gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induc... 70 1e-029
ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription ... 70 1e-029
gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At... 70 1e-029
ref|NM_103522.1| Arabidopsis thaliana ARF23; transcription ... 113 2e-029
gb|BP561404.1|BP561404 BP561404 RAFL7 Arabidopsis thaliana ... 77 2e-029
gb|AV829956.1|AV829956 AV829956 RAFL9 Arabidopsis thaliana ... 77 2e-029
gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11... 83 2e-029
ref|NM_103248.1| Arabidopsis thaliana ARF15; transcription ... 112 6e-029
gb|CW835890.1|CW835890 ET6524.Ds3.06.05.00.b.493 Arabidopsi... 74 2e-028
gb|BP798086.1|BP798086 BP798086 RAFL14 Arabidopsis thaliana... 127 3e-028
gb|BP814414.1|BP814414 BP814414 RAFL19 Arabidopsis thaliana... 90 9e-028
gb|AY669796.1| Arabidopsis thaliana clone C105354 ARF22 (At... 115 4e-026
ref|NM_103162.2| Arabidopsis thaliana ARF22; transcription ... 115 4e-026
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 83 1e-025
gb|AY669793.1| Arabidopsis thaliana clone C105348 (B) ARF13... 117 4e-025
gb|AY680406.1| Arabidopsis thaliana ARF13 (At1g34170) mRNA,... 117 4e-025
ref|NM_001036062.1| Arabidopsis thaliana ARF13 AT1G34170 (A... 117 4e-025
ref|NM_103140.3| Arabidopsis thaliana ARF13; transcription ... 117 4e-025
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 68 6e-025
gb|BP809776.1|BP809776 BP809776 RAFL16 Arabidopsis thaliana... 69 2e-024
gb|BP803497.1|BP803497 BP803497 RAFL14 Arabidopsis thaliana... 111 2e-023
emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome... 65 2e-023
gb|BX837124.1|BX837124 BX837124 Arabidopsis thaliana Adult ... 76 2e-023
emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome... 68 3e-023
gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV... 65 5e-023
emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome... 68 6e-023
gb|BP560557.2|BP560557 BP560557 RAFL4 Arabidopsis thaliana ... 109 8e-023
emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosom... 65 2e-022
gb|AF037228.1|AF037228 Arabidopsis thaliana transcription f... 67 7e-022
gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 m... 68 8e-021
>gb|DR750436.1|DR750436 56-L022342-065-009-H07-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-H07, mRNA sequence
Length = 874
Score = 221 bits (478), Expect = 1e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 131 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 310
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 311 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPAQEPEKCTVHSFCKTLTASDTSTH 490
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 491 GGFSVLRRHADD 526
>gb|U83245.1|ATU83245 Arabidopsis thaliana auxin response factor 1 (ARF1) mRNA, complete
cds
Length = 2332
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 163 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 342
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 343 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 522
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 523 GGFSVLRRHADD 558
>emb|AX507306.1| Sequence 2001 from Patent WO0216655
Length = 1998
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 49 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 228
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 229 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 408
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 409 GGFSVLRRHADD 444
>gb|BT002748.1| Arabidopsis thaliana clone C105458 auxin response factor 1
(At1g59750) mRNA, complete cds
Length = 2029
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 49 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 228
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 229 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 408
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 409 GGFSVLRRHADD 444
>ref|NM_104668.2| Arabidopsis thaliana ARF1 (AUXIN RESPONSE FACTOR 1); transcription
factor AT1G59750 (ARF1) transcript variant AT1G59750.1
mRNA, complete cds
Length = 2470
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 301 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 480
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 481 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 660
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 661 GGFSVLRRHADD 696
>ref|NM_179499.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE FACTOR 1); transcription
factor AT1G59750 (ARF1) transcript variant AT1G59750.2
mRNA, complete cds
Length = 2452
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 301 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 480
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 481 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 660
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 661 GGFSVLRRHADD 696
>ref|NM_001036131.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE FACTOR 1); transcription
factor AT1G59750 (ARF1) transcript variant AT1G59750.3
mRNA, complete cds
Length = 2290
Score = 221 bits (477), Expect = 2e-056
Identities = 89/132 (67%), Positives = 104/132 (78%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 101 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 280
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 281 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 460
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 461 GGFSVLRRHADD 496
>emb|BX815613.1|CNS0ADXB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZB02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2327
Score = 218 bits (470), Expect = 2e-055
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILC+
Sbjct: 163 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCE 342
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQ+ L PE DQ +C V+SFCKTLTASDTSTH
Sbjct: 343 VINIQRRAEPETDEVYAQMTLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 522
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 523 GGFSVLRRHADD 558
>gb|AY133723.1| Arabidopsis thaliana auxin response factor 1 (At1g59750) mRNA,
complete cds
Length = 2464
Score = 217 bits (469), Expect = 2e-055
Identities = 88/132 (66%), Positives = 103/132 (78%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 303 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 482
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTLTASDTSTH 623
V+N++ RAE ++DEVYAQI L PE DQ +C V+SFCKTLTASDTST
Sbjct: 483 VINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTQ 662
Query: 624 GGFSVLRRHAEE 659
GGFSVLRRHA++
Sbjct: 663 GGFSVLRRHADD 698
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.1
mRNA, complete cds
Length = 3513
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 670 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 849
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 850 INVDLKAEADTDEVYAQITLLPEANQ 927
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 973 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 1065
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 670 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 849
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 850 INVDLKAEADTDEVYAQITLLPEANQ 927
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 973 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 1065
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000
(ARF2) transcript variant AT5G62000.3 mRNA, complete cds
Length = 3387
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 544 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 723
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 724 INVDLKAEADTDEVYAQITLLPEANQ 801
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 847 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 939
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 544 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 723
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 724 INVDLKAEADTDEVYAQITLLPEANQ 801
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 847 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 939
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.2
mRNA, complete cds
Length = 3384
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 544 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 723
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 724 INVDLKAEADTDEVYAQITLLPEANQ 801
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 847 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 939
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 478 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 657
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 658 INVDLKAEADTDEVYAQITLLPEANQ 735
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 781 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 873
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 507 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 686
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 687 INVDLKAEADTDEVYAQITLLPEANQ 764
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 810 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 902
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 507 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 686
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 687 INVDLKAEADTDEVYAQITLLPEANQ 764
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 810 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 902
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 507 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 686
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 687 INVDLKAEADTDEVYAQITLLPEANQ 764
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 810 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 902
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 459 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 638
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 639 INVDLKAEADTDEVYAQITLLPEANQ 716
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 762 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 854
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 457 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 636
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 637 INVDLKAEADTDEVYAQITLLPEANQ 714
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 760 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 852
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +2
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 509 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 688
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 689 INVDLKAEADTDEVYAQITLLPEANQ 766
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 812 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 904
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
cds
Length = 2772
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 169 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 348
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 349 INVDLKAEADTDEVYAQITLLPEANQ 426
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 472 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 564
>emb|CS165547.1| Sequence 55 from Patent WO2005085453
Length = 2580
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 169 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 348
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 349 INVDLKAEADTDEVYAQITLLPEANQ 426
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 472 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 564
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
Length = 2037
Score = 161 bits (347), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 169 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 348
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 349 INVDLKAEADTDEVYAQITLLPEANQ 426
Score = 68.0 bits (142), Expect(2) = 7e-053
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 472 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 564
>emb|CS165497.1| Sequence 5 from Patent WO2005085453
Length = 2576
Score = 128 bits (274), Expect(3) = 8e-048
Identities = 46/68 (67%), Positives = 61/68 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 169 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 348
Query: 447 VNVELRAE 470
+NV+L+ +
Sbjct: 349 INVDLKRQ 372
Score = 68.0 bits (142), Expect(3) = 8e-048
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 468 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 560
Score = 35.0 bits (70), Expect(3) = 8e-048
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3 / +3
Query: 468 ETDSDEVYAQIMLQPEADQ 524
E D+DEVYAQI L PEA+Q
Sbjct: 366 EADTDEVYAQITLLPEANQ 422
>emb|CS165548.1| Sequence 56 from Patent WO2005085453
Length = 2576
Score = 128 bits (274), Expect(3) = 8e-048
Identities = 46/68 (67%), Positives = 61/68 (89%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 169 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 348
Query: 447 VNVELRAE 470
+NV+L+ +
Sbjct: 349 INVDLKRQ 372
Score = 68.0 bits (142), Expect(3) = 8e-048
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 468 RFQVHSFCKTLTASDTSTHGGFSVLRRHADE 560
Score = 35.0 bits (70), Expect(3) = 8e-048
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3 / +3
Query: 468 ETDSDEVYAQIMLQPEADQ 524
E D+DEVYAQI L PEA+Q
Sbjct: 366 EADTDEVYAQITLLPEANQ 422
>ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.1 mRNA, complete cds
Length = 2425
Score = 121 bits (258), Expect(2) = 6e-045
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +3 / +3
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRC 572
+DQ +P+F+LPPKILC+V++V L+AE ++DEVYAQI LQPE DQ +
Sbjct: 495 VDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKP 674
Query: 573 NVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 675 TVDSFVKILTASDTSTHGGFSVLRKHATE 761
Score = 82.2 bits (173), Expect(2) = 6e-045
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQL AST+Q
Sbjct: 363 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 488
>ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.3 mRNA, complete cds
Length = 2171
Score = 121 bits (258), Expect(2) = 6e-045
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +3 / +1
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRC 572
+DQ +P+F+LPPKILC+V++V L+AE ++DEVYAQI LQPE DQ +
Sbjct: 241 VDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKP 420
Query: 573 NVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 421 TVDSFVKILTASDTSTHGGFSVLRKHATE 507
Score = 82.2 bits (173), Expect(2) = 6e-045
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQL AST+Q
Sbjct: 109 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 234
>gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At2g46530) mRNA, complete
cds
Length = 1900
Score = 121 bits (258), Expect(2) = 6e-045
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +3 / +1
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRC 572
+DQ +P+F+LPPKILC+V++V L+AE ++DEVYAQI LQPE DQ +
Sbjct: 241 VDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKP 420
Query: 573 NVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 421 TVDSFVKILTASDTSTHGGFSVLRKHATE 507
Score = 82.2 bits (173), Expect(2) = 6e-045
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQL AST+Q
Sbjct: 109 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 234
>gb|BX837695.1|BX837695 BX837695 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH70ZC10 5PRIM,
mRNA sequence
Length = 951
Score = 121 bits (258), Expect(2) = 6e-045
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +3 / +1
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRC 572
+DQ +P+F+LPPKILC+V++V L+AE ++DEVYAQI LQPE DQ +
Sbjct: 499 VDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKP 678
Query: 573 NVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 679 TVDSFVKILTASDTSTHGGFSVLRKHATE 765
Score = 82.2 bits (173), Expect(2) = 6e-045
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQL AST+Q
Sbjct: 367 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 492
>gb|AV822685.1|AV822685 AV822685 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-10-F10 5',
mRNA sequence
Length = 638
Score = 174 bits (374), Expect = 3e-042
Identities = 71/112 (63%), Positives = 84/112 (75%)
Frame = +3 / +3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 303 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 482
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQXXXXXXXXXXXXXXRCNVYSFCKTL 599
V+N++ RAE ++DEVYAQI L PE DQ +C +SFCKTL
Sbjct: 483 VINIQRRAEPETDEVYAQITLLPELDQSEPTXPDAPVQEPEKCTXHSFCKTL 638
>ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.2 mRNA, complete cds
Length = 2413
Score = 82.2 bits (173), Expect(3) = 1e-041
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQL AST+Q
Sbjct: 356 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQ 481
Score = 74.4 bits (156), Expect(3) = 1e-041
Identities = 28/43 (65%), Positives = 38/43 (88%)
Frame = +3 / +2
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAD 521
+DQ +P+F+LPPKILC+V++V L+AE ++DEVYAQI LQPE D
Sbjct: 488 VDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEED 616
Score = 54.2 bits (112), Expect(3) = 1e-041
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 576 VYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 666 VDSFVKILTASDTSTHGGFSVLRKHATE 749
>gb|BX837073.1|BX837073 BX837073 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS73ZE03 5PRIM, mRNA
sequence
Length = 930
Score = 79.4 bits (167), Expect(3) = 3e-041
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
D L+ ELW ACAGPLV VPR GE V+YFPQGHMEQ AST+Q
Sbjct: 356 DELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQWVASTNQ 481
Score = 75.8 bits (159), Expect(3) = 3e-041
Identities = 29/43 (67%), Positives = 38/43 (88%)
Frame = +3 / +2
Query: 393 LDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAD 521
+DQ +P+F+LPPKILC+V++V LRAE ++DEVYAQI LQPE D
Sbjct: 488 VDQEIPVFNLPPKILCRVLSVTLRAEHETDEVYAQITLQPEED 616
Score = 54.2 bits (112), Expect(3) = 3e-041
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 576 VYSFCKTLTASDTSTHGGFSVLRRHAEE 659
V SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 666 VDSFVKILTASDTSTHGGFSVLRKHATE 749
>ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription factor AT3G61830 (ARF18)
mRNA, complete cds
Length = 2347
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 340 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 474
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 478 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 603
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 658 HSFVKILTASDTSTHGGFSVLRKHATE 738
>gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds
Length = 2331
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 343 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 477
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 481 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 606
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 661 HSFVKILTASDTSTHGGFSVLRKHATE 741
>gb|AY059746.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 2307
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 278 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 412
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +2
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 416 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 541
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 596 HSFVKILTASDTSTHGGFSVLRKHATE 676
>emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS50ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2115
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 175 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 309
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 313 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 438
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 493 HSFVKILTASDTSTHGGFSVLRKHATE 573
>gb|AY091392.1| Arabidopsis thaliana putative auxin response factor protein
(At3g61830) mRNA, complete cds
Length = 1840
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 58 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 192
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 196 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 321
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 376 HSFVKILTASDTSTHGGFSVLRKHATE 456
>gb|AF334717.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 1809
Score = 77.1 bits (162), Expect(3) = 2e-040
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLD 398
D L+ ELW CAGPLV VPR E V+YFPQGHMEQL AST+Q ++
Sbjct: 58 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGIN 192
Score = 74.4 bits (156), Expect(3) = 2e-040
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 399 QHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+ +P+FDLPPKILC+V++V L+AE ++DEVYAQI LQPE DQ
Sbjct: 196 EEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQ 321
Score = 54.7 bits (113), Expect(3) = 2e-040
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 376 HSFVKILTASDTSTHGGFSVLRKHATE 456
>gb|AV528157.1|AV528157 AV528157 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL02d09R 5', mRNA
sequence
Length = 555
Score = 161 bits (347), Expect = 1e-038
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +2
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 233 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 412
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 413 INVDLKAEADTDEVYAQITLLPEANQ 490
>gb|AV528415.1|AV528415 AV528415 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL08e05R 5', mRNA
sequence
Length = 572
Score = 161 bits (347), Expect = 1e-038
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 279 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 458
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 459 INVDLKAEADTDEVYAQITLLPEANQ 536
>gb|AV529218.1|AV529218 AV529218 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL30g04R 5', mRNA
sequence
Length = 546
Score = 161 bits (347), Expect = 1e-038
Identities = 61/86 (70%), Positives = 77/86 (89%)
Frame = +3 / +2
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPRQ + V+YFPQGH+EQ+EAST+Q +Q +PL+DLP K+LC+V
Sbjct: 266 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 445
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV+L+AE D+DEVYAQI L PEA+Q
Sbjct: 446 INVDLKAEADTDEVYAQITLLPEANQ 523
>gb|BP817425.1|BP817425 BP817425 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-44-O04 5',
mRNA sequence
Length = 402
Score = 160 bits (345), Expect = 3e-038
Identities = 63/87 (72%), Positives = 74/87 (85%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL RELWHACAGPLVT+PR+GE VYYFP+GHMEQLEAS Q L+Q +P F+LP KILCK
Sbjct: 119 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 298
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
V+N++ RAE ++DEVYAQI L PE DQ
Sbjct: 299 VINIQRRAEAETDEVYAQITLWPELDQ 379
>ref|NM_001036629.1| Arabidopsis thaliana ARF9 (AUXIN RESPONSE FACTOR 9) AT4G23980
(ARF9) transcript variant AT4G23980.2 mRNA, complete cds
Length = 2835
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +2
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 419 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 538
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 560 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 664
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 722 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 814
>ref|NM_118530.3| Arabidopsis thaliana ARF9 (AUXIN RESPONSE FACTOR 9); transcription
factor AT4G23980 (ARF9) transcript variant AT4G23980.1
mRNA, complete cds
Length = 2479
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +2
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 320 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 439
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 461 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 565
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 623 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 715
>emb|BX828437.1|CNS0A2BW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH8ZD05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2473
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +2
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 320 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 439
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 461 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 565
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 623 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 715
>gb|AF082176.1|AF082176 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete
cds
Length = 2292
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +3
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 312 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 431
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +3
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 453 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 557
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 615 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 707
>gb|AF344312.1| Arabidopsis thaliana clone C00029 (e) auxin response factor 9
(At4g23980) mRNA, complete cds
Length = 1917
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +1
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 25 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 144
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +1
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 166 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 270
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 328 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 420
>gb|BT015544.1| Arabidopsis thaliana At4g23980 mRNA sequence
Length = 1909
Score = 76.2 bits (160), Expect(3) = 1e-037
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +3 / +1
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E VYYFPQGHMEQLEAST Q
Sbjct: 22 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQ 141
Score = 62.9 bits (131), Expect(3) = 1e-037
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3 / +1
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV L+AE D+DEVYAQI L P
Sbjct: 163 PLFVLPPKILCNVMNVSLQAEKDTDEVYAQITLIP 267
Score = 57.9 bits (120), Expect(3) = 1e-037
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 325 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 417
>gb|BX838143.1|BX838143 BX838143 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH2ZG06 5PRIM, mRNA
sequence
Length = 1067
Score = 75.8 bits (159), Expect(3) = 2e-036
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +3 / +3
Query: 270 LFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
L+ ELW CAGPLV VP+ E +YYFPQGHMEQLEAST Q
Sbjct: 318 LYDELWKLCAGPLVDVPQAQERIYYFPQGHMEQLEASTQQ 437
Score = 59.3 bits (123), Expect(3) = 2e-036
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3 / +3
Query: 408 PLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
PLF LPPKILC V+NV +AE D+DEVY QI L P
Sbjct: 459 PLFVLPPKILCNVMNVSFQAEKDTDEVYTQITLIP 563
Score = 57.9 bits (120), Expect(3) = 2e-036
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3 / +3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R V+SF K LTASDTSTHGGFSVLR+HA E
Sbjct: 621 RPKVHSFSKVLTASDTSTHGGFSVLRKHATE 713
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,142,933,436
Number of Sequences: 1013581
Number of extensions: 13467794
Number of successful extensions: 131876
Number of sequences better than 1.0e-020: 140
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 40546266940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)