TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2649891.2.1
         (621 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BT004056.1|  Arabidopsis thaliana clone RAFL15-26-E06 (R2...    99   3e-035
ref|NM_130074.2|  Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ...    99   3e-035
emb|BX821210.1|CNS0A89M  Arabidopsis thaliana Full-length cD...    99   3e-035
ref|NM_105241.3|  Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ...    84   6e-031
gb|AE005173.1|  Arabidopsis thaliana chromosome 1, bottom ar...    59   2e-027
gb|AC001229.1|F5I14  Sequence of BAC F5I14 from Arabidopsis ...    59   2e-027
gb|AC007234.3|AC007234  Genomic sequence for Arabidopsis tha...    59   2e-027
gb|AY619565.1|  Arabidopsis thaliana beta-expansin 6 (EXPB6)...    50   1e-025
gb|AC007659.2|AC007659  Arabidopsis thaliana chromosome II s...    56   2e-024
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
           beta-expansin (At2g45110) mRNA, complete cds
          Length = 977

 Score = 98.7 bits (209), Expect(3) = 3e-035
 Identities = 37/65 (56%), Positives = 52/65 (80%)
 Frame = -2 / +3

                                                                       
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
           GA+AKPGQADQLRSAG +R+ Y R  C + G +I F++DAG+N  Y++ +VEYE+GDG+L
Sbjct: 462 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 641

                
Query: 440 RSVEL 426
            +VE+
Sbjct: 642 SNVEI 656

 Score = 48.7 bits (100), Expect(3) = 3e-035
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2 / +3

                                               
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
           MQ+    VW+ NSG+ L+GPF++RLTSG    V+ +
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791

 Score = 41.4 bits (84), Expect(3) = 3e-035
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2 / +3

                                      
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
           S + +VA +VIPA W P  +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
           AT2G45110 (ATEXPB4) mRNA, complete cds
          Length = 956

 Score = 98.7 bits (209), Expect(3) = 3e-035
 Identities = 37/65 (56%), Positives = 52/65 (80%)
 Frame = -2 / +3

                                                                       
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
           GA+AKPGQADQLRSAG +R+ Y R  C + G +I F++DAG+N  Y++ +VEYE+GDG+L
Sbjct: 462 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 641

                
Query: 440 RSVEL 426
            +VE+
Sbjct: 642 SNVEI 656

 Score = 48.7 bits (100), Expect(3) = 3e-035
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2 / +3

                                               
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
           MQ+    VW+ NSG+ L+GPF++RLTSG    V+ +
Sbjct: 684 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791

 Score = 41.4 bits (84), Expect(3) = 3e-035
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2 / +3

                                      
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
           S + +VA +VIPA W P  +YRS+VNF
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRSIVNF 851
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 923

 Score = 98.7 bits (209), Expect(3) = 3e-035
 Identities = 37/65 (56%), Positives = 52/65 (80%)
 Frame = -2 / +2

                                                                       
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
           GA+AKPGQADQLRSAG +R+ Y R  C + G +I F++DAG+N  Y++ +VEYE+GDG+L
Sbjct: 431 GALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 610

                
Query: 440 RSVEL 426
            +VE+
Sbjct: 611 SNVEI 625

 Score = 48.7 bits (100), Expect(3) = 3e-035
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2 / +2

                                               
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
           MQ+    VW+ NSG+ L+GPF++RLTSG    V+ +
Sbjct: 653 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 760

 Score = 41.4 bits (84), Expect(3) = 3e-035
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2 / +2

                                      
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
           S + +VA +VIPA W P  +YRS+VNF
Sbjct: 740 SHKVIVAYNVIPANWKPDESYRSIVNF 820
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
           AT1G65680 (ATEXPB2) mRNA, complete cds
          Length = 822

 Score = 84.5 bits (178), Expect(3) = 6e-031
 Identities = 36/67 (53%), Positives = 46/67 (68%)
 Frame = -2 / +1

                                                                       
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
           GAMA  GQ  QLR+ G L+I Y +V C++ G  + F+VD GSNAN  AVLV Y +GDGE+
Sbjct: 424 GAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEI 603

                  
Query: 440 RSVELMQ 420
             +EL Q
Sbjct: 604 GRIELKQ 624

 Score = 51.0 bits (105), Expect(3) = 6e-031
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -2 / +1

                                      
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
           SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 739 SGKTVVASNVIPANWQPGAIYKSNVNF 819

 Score = 38.6 bits (78), Expect(3) = 6e-031
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2 / +1

                                      
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
           M QSWG VW+ +  + L+ P S+R+TS
Sbjct: 652 MSQSWGAVWKLDVSSPLRAPLSLRVTS 732
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
          Length = 14668883

 Score = 59.3 bits (123), Expect(4) = 2e-027
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -2 / +2

                                                           
Query: 551     RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
               RV C++ G  + F+VD GSNAN  AVLV Y +GDGE+  +EL Q
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 8669515

 Score = 51.0 bits (105), Expect(4) = 2e-027
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -2 / +2

                                          
Query: 299     SGRTVVASDVIPAGWTPGATYRSVVNF 219
               SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 8669630 SGKTVVASNVIPANWQPGAIYKSNVNF 8669710

 Score = 38.6 bits (78), Expect(4) = 2e-027
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2 / +2

                                          
Query: 383     MQQSWGXVWRXNSGATLQGPFSVRLTS 303
               M QSWG VW+ +  + L+ P S+R+TS
Sbjct: 8669543 MSQSWGAVWKLDVSSPLRAPLSLRVTS 8669623

 Score = 30.4 bits (60), Expect(4) = 2e-027
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2 / +2

                                       
Query: 620     GAMAKPGQADQLRSAGRLRIQYXR 549
               GAMA  GQ  QLR+ G L+I Y +
Sbjct: 8669198 GAMAISGQDSQLRNVGELQILYKK 8669269
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
              sequence
          Length = 109560

 Score = 59.3 bits (123), Expect(4) = 2e-027
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -2 / +1

                                                          
Query: 551    RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
              RV C++ G  + F+VD GSNAN  AVLV Y +GDGE+  +EL Q
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 107271

 Score = 51.0 bits (105), Expect(4) = 2e-027
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -2 / +1

                                         
Query: 299    SGRTVVASDVIPAGWTPGATYRSVVNF 219
              SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 107386 SGKTVVASNVIPANWQPGAIYKSNVNF 107466

 Score = 38.6 bits (78), Expect(4) = 2e-027
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2 / +1

                                         
Query: 383    MQQSWGXVWRXNSGATLQGPFSVRLTS 303
              M QSWG VW+ +  + L+ P S+R+TS
Sbjct: 107299 MSQSWGAVWKLDVSSPLRAPLSLRVTS 107379

 Score = 30.4 bits (60), Expect(4) = 2e-027
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2 / +1

                                      
Query: 620    GAMAKPGQADQLRSAGRLRIQYXR 549
              GAMA  GQ  QLR+ G L+I Y +
Sbjct: 106954 GAMAISGQDSQLRNVGELQILYKK 107025
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
          Length = 92356

 Score = 59.3 bits (123), Expect(4) = 2e-027
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -2 / +3

                                                         
Query: 551   RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
             RV C++ G  + F+VD GSNAN  AVLV Y +GDGE+  +EL Q
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 25718

 Score = 51.0 bits (105), Expect(4) = 2e-027
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -2 / +3

                                        
Query: 299   SGRTVVASDVIPAGWTPGATYRSVVNF 219
             SG+TVVAS+VIPA W PGA Y+S VNF
Sbjct: 25833 SGKTVVASNVIPANWQPGAIYKSNVNF 25913

 Score = 38.6 bits (78), Expect(4) = 2e-027
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2 / +3

                                        
Query: 383   MQQSWGXVWRXNSGATLQGPFSVRLTS 303
             M QSWG VW+ +  + L+ P S+R+TS
Sbjct: 25746 MSQSWGAVWKLDVSSPLRAPLSLRVTS 25826

 Score = 30.4 bits (60), Expect(4) = 2e-027
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2 / +3

                                     
Query: 620   GAMAKPGQADQLRSAGRLRIQYXR 549
             GAMA  GQ  QLR+ G L+I Y +
Sbjct: 25401 GAMAISGQDSQLRNVGELQILYKK 25472
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
          Length = 2504

 Score = 49.6 bits (102), Expect(4) = 1e-025
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -2 / +1

                                                     
Query: 548  VPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVEL 426
            V C +   +IAF++D G+N  Y++ +VEYE+GDG+L   E+
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEI 2301

 Score = 45.5 bits (93), Expect(4) = 1e-025
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -2 / +1

                                                
Query: 383  MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
            MQ+    VW+ NSG+ L GPF++RLTS     VV +
Sbjct: 2329 MQEMRSAVWKVNSGSPLTGPFNIRLTSAESHNVVVA 2436

 Score = 43.7 bits (89), Expect(4) = 1e-025
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = -2 / +1

                                       
Query: 299  SGRTVVASDVIPAGWTPGATYRSVVNF 219
            S   VVA +VIPA W P  TYRSVVNF
Sbjct: 2416 SHNVVVAYNVIPANWKPNETYRSVVNF 2496

 Score = 41.8 bits (85), Expect(4) = 1e-025
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = -2 / +2

                                    
Query: 620  GAMAKPGQADQLRSAGRLRIQYXR 549
            GA+A+PGQ D+LRSAG LR+ Y R
Sbjct: 1898 GALARPGQGDRLRSAGVLRVYYIR 1969
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
             sequence. Sequence from clones T13E15, T14P1
          Length = 87885

 Score = 55.6 bits (115), Expect(4) = 2e-024
 Identities = 19/39 (48%), Positives = 31/39 (79%)
 Frame = -2 / +2

                                                    
Query: 542   CSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVEL 426
             C + G +I F++DAG+N  Y++ +VEYE+GDG+L +VE+
Sbjct: 66551 CLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEI 66667

 Score = 48.7 bits (100), Expect(4) = 2e-024
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -2 / +2

                                                 
Query: 383   MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVAS 276
             MQ+    VW+ NSG+ L+GPF++RLTSG    V+ +
Sbjct: 66695 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 66802

 Score = 46.4 bits (95), Expect(4) = 2e-024
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -2 / +3

                                     
Query: 620   GAMAKPGQADQLRSAGRLRIQYXR 549
             GA+AKPGQADQLRSAG +R+ Y R
Sbjct: 66111 GALAKPGQADQLRSAGVIRVNYKR 66182

 Score = 41.4 bits (84), Expect(4) = 2e-024
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2 / +2

                                        
Query: 299   SGRTVVASDVIPAGWTPGATYRSVVNF 219
             S + +VA +VIPA W P  +YRS+VNF
Sbjct: 66782 SHKVIVAYNVIPANWKPDESYRSIVNF 66862
  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 900,943,508
Number of Sequences: 1013581
Number of extensions: 9755210
Number of successful extensions: 127534
Number of sequences better than 1.0e-020: 10
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)