TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_120884.1| Arabidopsis thaliana DNA binding / nucleic... 171 2e-061
gb|BT003950.1| Arabidopsis thaliana clone RAFL15-25-L07 (R2... 166 6e-060
ref|NM_125493.2| Arabidopsis thaliana DNA binding / nucleic... 166 6e-060
dbj|AK220794.1| Arabidopsis thaliana mRNA for RNA helicase,... 166 7e-060
emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome ... 101 8e-058
emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome... 101 8e-058
emb|BX829495.1|CNS0A17Y Arabidopsis thaliana Full-length cD... 153 8e-056
dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosom... 94 4e-054
emb|AL094383.1|CNS00X3L Arabidopsis thaliana genome survey ... 79 2e-043
gb|AU227819.1|AU227819 AU227819 RAFL15 Arabidopsis thaliana... 89 2e-036
gb|CW798485.1|CW798485 WiscDsLox412D12 Arabidopsis thaliana... 87 1e-031
gb|BP588128.1|BP588128 BP588128 RAFL15 Arabidopsis thaliana... 82 3e-031
>ref|NM_120884.1| Arabidopsis thaliana DNA binding / nucleic acid binding AT5G08020
mRNA, complete cds
Length = 1815
Score = 171 bits (367), Expect(2) = 2e-061
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = -1 / +1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVTE SGYWCE CQK D ECSLRYIM VKVSD TGE W+S
Sbjct: 1369 IKPDQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSA 1548
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD 482
FN+ AEKIIGC+AD+L+ ++ EEG+
Sbjct: 1549 FNDEAEKIIGCTADDLNDLKSEEGE 1623
Score = 103 bits (219), Expect(2) = 9e-034
Identities = 46/73 (63%), Positives = 52/73 (71%)
Frame = +3 / -2
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
QP+IFSA SLN + SPV SET T ++YL HS SFF SHQ P+ SVTFLLQVLQ
Sbjct: 1580 QPIIFSASSLNADNQVSPVESETFTAIIYLKLHSWSFF*QLSHQ*PESIASVTFLLQVLQ 1401
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 1400 ARYHIVWSGLMKL 1362
Score = 87.7 bits (185), Expect(2) = 2e-061
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = -1 / +1
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 311
+ + KLKEATW HLFR+SV+Q EYN+EKRQRITVR +P++ AAE++ LL+ I+K
Sbjct: 1627 NEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 1797
Score = 62.9 bits (131), Expect(2) = 9e-034
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +3 / -2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
Y* + + S L SAA S G + LTVILCLFSLLYSC TL R R* QVAS SF
Sbjct: 1814 Y*DVLFLEMSWSNNLVSAAKSIGETPLTVILCLFSLLYSC*ETLIRKR*DDQVASFSF 1641
>gb|BT003950.1| Arabidopsis thaliana clone RAFL15-25-L07 (R20760) putative RNA
helicase (At5g61000) mRNA, complete cds
Length = 2094
Score = 166 bits (358), Expect(2) = 6e-060
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWY+ACKTCNKKVTE SGYWCEGCQ+ ECSLRYIM VKV+D +GE W+S
Sbjct: 1521 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 1700
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD 482
FN+ AEKI+GCSADEL++++ EEG+
Sbjct: 1701 FNDEAEKILGCSADELNKLKSEEGE 1775
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 45/72 (62%), Positives = 48/72 (66%)
Frame = +3 / -3
Query: 528 PMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQA 707
P IFSA SLN E SP S T T +MYL HS F WHPSHQ P+ SVTFLLQVLQA
Sbjct: 1729 PRIFSASSLNDEIQVSPDESVTFTAIMYLKLHSSYFLWHPSHQ*PESSASVTFLLQVLQA 1550
Query: 708 RYHMFWSGLXGL 743
YH+ WSGL L
Sbjct: 1549 WYHIVWSGLMKL 1514
Score = 86.8 bits (183), Expect(2) = 6e-060
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / +3
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 1779 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 1946
Score = 57.9 bits (120), Expect(2) = 1e-032
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +3 / -3
Query: 327 SRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
S L SAA S GA+ TV LCLFS LYS CVTLTR * VAS SF
Sbjct: 1933 SNNLVSAAKSRGATPFTVTLCLFSPLYSFCVTLTRKT*DDHVASFSF 1793
>ref|NM_125493.2| Arabidopsis thaliana DNA binding / nucleic acid binding AT5G61000
mRNA, complete cds
Length = 2074
Score = 166 bits (358), Expect(2) = 6e-060
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWY+ACKTCNKKVTE SGYWCEGCQ+ ECSLRYIM VKV+D +GE W+S
Sbjct: 1521 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 1700
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD 482
FN+ AEKI+GCSADEL++++ EEG+
Sbjct: 1701 FNDEAEKILGCSADELNKLKSEEGE 1775
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 45/72 (62%), Positives = 48/72 (66%)
Frame = +3 / -1
Query: 528 PMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQA 707
P IFSA SLN E SP S T T +MYL HS F WHPSHQ P+ SVTFLLQVLQA
Sbjct: 1729 PRIFSASSLNDEIQVSPDESVTFTAIMYLKLHSSYFLWHPSHQ*PESSASVTFLLQVLQA 1550
Query: 708 RYHMFWSGLXGL 743
YH+ WSGL L
Sbjct: 1549 WYHIVWSGLMKL 1514
Score = 86.8 bits (183), Expect(2) = 6e-060
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / +3
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 1779 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 1946
Score = 57.9 bits (120), Expect(2) = 1e-032
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +3 / -1
Query: 327 SRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
S L SAA S GA+ TV LCLFS LYS CVTLTR * VAS SF
Sbjct: 1933 SNNLVSAAKSRGATPFTVTLCLFSPLYSFCVTLTRKT*DDHVASFSF 1793
>dbj|AK220794.1| Arabidopsis thaliana mRNA for RNA helicase, partial cds, clone:
RAFL22-28-F10
Length = 877
Score = 166 bits (358), Expect(2) = 7e-060
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWY+ACKTCNKKVTE SGYWCEGCQ+ ECSLRYIM VKV+D +GE W+S
Sbjct: 315 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 494
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD 482
FN+ AEKI+GCSADEL++++ EEG+
Sbjct: 495 FNDEAEKILGCSADELNKLKSEEGE 569
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 45/72 (62%), Positives = 48/72 (66%)
Frame = +3 / -1
Query: 528 PMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQA 707
P IFSA SLN E SP S T T +MYL HS F WHPSHQ P+ SVTFLLQVLQA
Sbjct: 523 PRIFSASSLNDEIQVSPDESVTFTAIMYLKLHSSYFLWHPSHQ*PESSASVTFLLQVLQA 344
Query: 708 RYHMFWSGLXGL 743
YH+ WSGL L
Sbjct: 343 WYHIVWSGLMKL 308
Score = 86.8 bits (183), Expect(2) = 7e-060
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / +3
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 573 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 740
Score = 57.9 bits (120), Expect(2) = 1e-032
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +3 / -1
Query: 327 SRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
S L SAA S GA+ TV LCLFS LYS CVTLTR * VAS SF
Sbjct: 727 SNNLVSAAKSRGATPFTVTLCLFSPLYSFCVTLTRKT*DDHVASFSF 587
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
Length = 89988
Score = 101 bits (215), Expect(3) = 8e-058
Identities = 35/43 (81%), Positives = 36/43 (83%)
Frame = -1 / +2
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRY 608
+KPDQ MWYRACKTCNKKVTE SGYWCE CQK D ECSLRY
Sbjct: 908 IKPDQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRY 1036
Score = 87.7 bits (185), Expect(3) = 8e-058
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = -1 / +1
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 311
+ + KLKEATW HLFR+SV+Q EYN+EKRQRITVR +P++ AAE++ LL+ I+K
Sbjct: 1360 NEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 1530
Score = 76.2 bits (160), Expect(3) = 8e-058
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = -1 / +1
Query: 622 CSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKE 491
C +RYIM VKVSD TGE W+S FN+ AEKIIGC+AD+L+ ++ E
Sbjct: 1123 CVIRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSE 1254
Score = 66.6 bits (139), Expect(3) = 8e-026
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3 / -1
Query: 609 YLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQARYHMFWSGLXGL 743
YL HS SFF SHQ P+ SVTFLLQVLQARYH+ WSGL L
Sbjct: 1035 YLKLHSWSFF*QLSHQ*PESIASVTFLLQVLQARYHIVWSGLMKL 901
Score = 62.9 bits (131), Expect(3) = 8e-026
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +3 / -2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
Y* + + S L SAA S G + LTVILCLFSLLYSC TL R R* QVAS SF
Sbjct: 1547 Y*DVLFLEMSWSNNLVSAAKSIGETPLTVILCLFSLLYSC*ETLIRKR*DDQVASFSF 1374
Score = 44.6 bits (91), Expect(3) = 8e-026
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / -2
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYL 614
QP+IFSA SLN + SPV SET T ++YL
Sbjct: 1220 QPIIFSASSLNADNQVSPVESETFTAIIYL 1131
>emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome 5, BAC clone F13G24 (ESSA project)
Length = 88095
Score = 101 bits (215), Expect(3) = 8e-058
Identities = 35/43 (81%), Positives = 36/43 (83%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRY 608
+KPDQ MWYRACKTCNKKVTE SGYWCE CQK D ECSLRY
Sbjct: 81150 IKPDQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRY 81278
Score = 87.7 bits (185), Expect(3) = 8e-058
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = -1 / +2
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 311
+ + KLKEATW HLFR+SV+Q EYN+EKRQRITVR +P++ AAE++ LL+ I+K
Sbjct: 81602 NEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 81772
Score = 76.2 bits (160), Expect(3) = 8e-058
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = -1 / +2
Query: 622 CSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKE 491
C +RYIM VKVSD TGE W+S FN+ AEKIIGC+AD+L+ ++ E
Sbjct: 81365 CVIRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSE 81496
Score = 66.6 bits (139), Expect(3) = 8e-026
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3 / -3
Query: 609 YLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQARYHMFWSGLXGL 743
YL HS SFF SHQ P+ SVTFLLQVLQARYH+ WSGL L
Sbjct: 81277 YLKLHSWSFF*QLSHQ*PESIASVTFLLQVLQARYHIVWSGLMKL 81143
Score = 62.9 bits (131), Expect(3) = 8e-026
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +3 / -1
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
Y* + + S L SAA S G + LTVILCLFSLLYSC TL R R* QVAS SF
Sbjct: 81789 Y*DVLFLEMSWSNNLVSAAKSIGETPLTVILCLFSLLYSC*ETLIRKR*DDQVASFSF 81616
Score = 44.6 bits (91), Expect(3) = 8e-026
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / -1
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYL 614
QP+IFSA SLN + SPV SET T ++YL
Sbjct: 81462 QPIIFSASSLNADNQVSPVESETFTAIIYL 81373
>emb|BX829495.1|CNS0A17Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB17ZC10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2002
Score = 153 bits (329), Expect(2) = 8e-056
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWY+ACKTCNKKVTE SG WCEGCQ+ ECSLRYIM VKV+D +GE W+S
Sbjct: 1488 IKPDQTMWYQACKTCNKKVTEALDSGDWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 1667
Query: 556 FNEHAEKIIGCSADELDRIRKE 491
FN+ AEK +GCSADEL++++ E
Sbjct: 1668 FNDEAEKSLGCSADELNKLKSE 1733
Score = 104 bits (222), Expect(2) = 1e-032
Identities = 44/72 (61%), Positives = 48/72 (66%)
Frame = +3 / -1
Query: 528 PMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQA 707
P +FSA SLN E SP S T T +MYL HS F WHPSHQ P+ SVTFLLQVLQA
Sbjct: 1696 PRLFSASSLNDEIQVSPDESVTFTAIMYLKLHSSYFLWHPSHQSPESSASVTFLLQVLQA 1517
Query: 708 RYHMFWSGLXGL 743
YH+ WSGL L
Sbjct: 1516 WYHIVWSGLMKL 1481
Score = 86.3 bits (182), Expect(2) = 8e-056
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = -1 / +3
Query: 475 YALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 1752 YQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 1913
Score = 57.9 bits (120), Expect(2) = 1e-032
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +3 / -1
Query: 327 SRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
S L SAA S GA+ TV LCLFS LYS CVTLTR * VAS SF
Sbjct: 1900 SNNLVSAAKSRGATPFTVTLCLFSPLYSFCVTLTRKT*DDHVASFSF 1760
>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3
Length = 61634
Score = 93.6 bits (198), Expect(3) = 4e-054
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = -1 / -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLR 611
+KPDQ MWY+ACKTCNKKVTE SGYWCEGCQ+ ECSLR
Sbjct: 60890 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLR 60765
Score = 86.8 bits (183), Expect(3) = 4e-054
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / -3
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 60444 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 60277
Score = 76.2 bits (160), Expect(3) = 1e-023
Identities = 31/52 (59%), Positives = 35/52 (67%)
Frame = +3 / +1
Query: 588 ETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQARYHMFWSGLXGL 743
E+ + YL HS F WHPSHQ P+ SVTFLLQVLQA YH+ WSGL L
Sbjct: 60742 ESKEYLSYLKLHSSYFLWHPSHQ*PESSASVTFLLQVLQAWYHIVWSGLMKL 60897
Score = 72.5 bits (152), Expect(3) = 4e-054
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = -1 / -1
Query: 613 RYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKE 491
RYIM VKV+D +GE W+S FN+ AEKI+GCSADEL++++ E
Sbjct: 60668 RYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSE 60546
Score = 57.9 bits (120), Expect(3) = 1e-023
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +3 / +2
Query: 327 SRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLSF 467
S L SAA S GA+ TV LCLFS LYS CVTLTR * VAS SF
Sbjct: 60290 SNNLVSAAKSRGATPFTVTLCLFSPLYSFCVTLTRKT*DDHVASFSF 60430
Score = 31.3 bits (62), Expect(3) = 1e-023
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2 / +3
Query: 506 IKLVGAAANDLLCMLVEHRDPCLASRIGDLDDHDV 610
++L+ + +LLC +VE R+P + +GD H V
Sbjct: 60561 VELIS*TSKNLLCFIVE*RNPSFSR*VGDFHRHYV 60665
>emb|AL094383.1|CNS00X3L Arabidopsis thaliana genome survey sequence SP6 end of BAC T13B19
of TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 79.0 bits (166), Expect(3) = 2e-043
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = -1 / +2
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR TV+ AP++ AAE++ + + I+
Sbjct: 413 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRGTVKGVAPLDFAAETRLVPQDIS 580
Score = 72.5 bits (152), Expect(3) = 2e-043
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = -1 / +3
Query: 613 RYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKE 491
RYIM VKV+D +GE W+S FN+ AEKI+GCSADEL++++ E
Sbjct: 189 RYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSE 311
Score = 65.2 bits (136), Expect(3) = 2e-043
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -1 / +3
Query: 700 KTCNKKVTETFGSGYWCEGCQKNDSECSLR 611
KTCNKKVTE SGYWCEGCQ+ ECSLR
Sbjct: 3 KTCNKKVTEALDSGYWCEGCQRKYEECSLR 92
>gb|AU227819.1|AU227819 AU227819 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-L07 3',
mRNA sequence
Length = 449
Score = 88.6 bits (187), Expect(2) = 2e-036
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = -1 / -2
Query: 625 ECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGD 482
ECSLRYIM VKV+D +GE W+S FN+ AEKI+GCSADEL++++ EEG+
Sbjct: 442 ECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGE 299
Score = 86.8 bits (183), Expect(2) = 2e-036
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / -2
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 295 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 128
>gb|CW798485.1|CW798485 WiscDsLox412D12 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 600
Score = 86.8 bits (183), Expect(2) = 1e-031
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = -1 / -3
Query: 481 DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
+ Y KLKEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 352 NEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 185
Score = 72.5 bits (152), Expect(2) = 1e-031
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = -1 / -1
Query: 613 RYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKE 491
RYIM VKV+D +GE W+S FN+ AEKI+GCSADEL++++ E
Sbjct: 576 RYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSE 454
>gb|BP588128.1|BP588128 BP588128 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-45-D07 3',
mRNA sequence
Length = 427
Score = 81.7 bits (172), Expect(2) = 3e-031
Identities = 32/51 (62%), Positives = 42/51 (82%)
Frame = -1 / -1
Query: 466 KLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIA 314
K KEATW H+FRVSVTQ+EYN EKRQR+TV+ AP++ AAE++ LL+ I+
Sbjct: 280 KTKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 128
Score = 76.2 bits (160), Expect(2) = 3e-031
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = -1 / -2
Query: 610 YIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGD 482
YIM VKV+D +GE W+S FN+ AEKI+GCSADEL++++ EEG+
Sbjct: 426 YIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGE 298
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,551,120,054
Number of Sequences: 1013581
Number of extensions: 20917840
Number of successful extensions: 156884
Number of sequences better than 1.0e-020: 13
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 48751511292
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)