TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594147.2.1
(744 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 111 3e-037
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 111 3e-037
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 111 3e-037
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 103 9e-035
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 61 3e-031
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 61 3e-031
gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis tha... 66 3e-031
gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6)... 66 5e-029
gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II s... 70 5e-026
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 111 bits (237), Expect(3) = 3e-037
Identities = 41/90 (45%), Positives = 58/90 (64%)
Frame = -1 / +3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E VH D+SG A GALAKPGQ QLR AG I++ Y R C + G ++ F ++
Sbjct: 402 CPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDA 581
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
G+NP Y++ ++EYE+ D L +V++ G
Sbjct: 582 GANPYYISFVVEYENGDGDLSNVEIQPAGG 671
Score = 55.1 bits (114), Expect(3) = 3e-037
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -1 / +3
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVAS 343
G ++ MQ+ AVWK+NSGS L+GPFNIRLT ++ +
Sbjct: 669 GSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791
Score = 29.0 bits (57), Expect(3) = 3e-037
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1 / +3
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S + +VA N IPA W +YRS
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRS 839
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 111 bits (237), Expect(3) = 3e-037
Identities = 41/90 (45%), Positives = 58/90 (64%)
Frame = -1 / +3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E VH D+SG A GALAKPGQ QLR AG I++ Y R C + G ++ F ++
Sbjct: 402 CPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDA 581
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
G+NP Y++ ++EYE+ D L +V++ G
Sbjct: 582 GANPYYISFVVEYENGDGDLSNVEIQPAGG 671
Score = 55.1 bits (114), Expect(3) = 3e-037
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -1 / +3
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVAS 343
G ++ MQ+ AVWK+NSGS L+GPFNIRLT ++ +
Sbjct: 669 GSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 791
Score = 29.0 bits (57), Expect(3) = 3e-037
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1 / +3
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S + +VA N IPA W +YRS
Sbjct: 771 SHKVIVAYNVIPANWKPDESYRS 839
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 111 bits (237), Expect(3) = 3e-037
Identities = 41/90 (45%), Positives = 58/90 (64%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E VH D+SG A GALAKPGQ QLR AG I++ Y R C + G ++ F ++
Sbjct: 371 CPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDA 550
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
G+NP Y++ ++EYE+ D L +V++ G
Sbjct: 551 GANPYYISFVVEYENGDGDLSNVEIQPAGG 640
Score = 55.1 bits (114), Expect(3) = 3e-037
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -1 / +2
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVAS 343
G ++ MQ+ AVWK+NSGS L+GPFNIRLT ++ +
Sbjct: 638 GSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 760
Score = 29.0 bits (57), Expect(3) = 3e-037
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1 / +2
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S + +VA N IPA W +YRS
Sbjct: 740 SHKVIVAYNVIPANWKPDESYRS 808
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 103 bits (219), Expect(3) = 9e-035
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = -1 / +1
Query: 729 CPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEPGSNPN 550
C E VHFD+SGTAFGA+A GQ+SQLR G +QI Y +V+C + G VTF V+ GSN N
Sbjct: 379 CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNAN 558
Query: 549 YLAVLIEYEDSDSALDSVDMMQ 484
AVL+ Y + D + +++ Q
Sbjct: 559 SFAVLVAYVNGDGEIGRIELKQ 624
Score = 46.9 bits (96), Expect(3) = 9e-035
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -1 / +1
Query: 462 QWVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
+W+ M QSWGAVWK++ S L+ P ++R+T
Sbjct: 640 KWLSMSQSWGAVWKLDVSSPLRAPLSLRVT 729
Score = 37.3 bits (75), Expect(3) = 9e-035
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1 / +1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VASN IPA W G Y+S
Sbjct: 730 SLESGKTVVASNVIPANWQPGAIYKS 807
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 61.1 bits (127), Expect(4) = 3e-031
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1 / +2
Query: 729 CPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
C E VHFD+SGTAFGA+A GQ+SQLR G +QI Y +
Sbjct: 8669153 CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 8669269
Score = 47.3 bits (97), Expect(4) = 3e-031
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1 / +2
Query: 615 RVQCEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQ 484
RV+C + G VTF V+ GSN N AVL+ Y + D + +++ Q
Sbjct: 8669384 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 8669515
Score = 46.9 bits (96), Expect(4) = 3e-031
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -1 / +2
Query: 462 QWVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
+W+ M QSWGAVWK++ S L+ P ++R+T
Sbjct: 8669531 KWLSMSQSWGAVWKLDVSSPLRAPLSLRVT 8669620
Score = 37.3 bits (75), Expect(4) = 3e-031
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1 / +2
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VASN IPA W G Y+S
Sbjct: 8669621 SLESGKTVVASNVIPANWQPGAIYKS 8669698
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 61.1 bits (127), Expect(4) = 3e-031
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1 / +1
Query: 729 CPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
C E VHFD+SGTAFGA+A GQ+SQLR G +QI Y +
Sbjct: 106909 CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 107025
Score = 47.3 bits (97), Expect(4) = 3e-031
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1 / +1
Query: 615 RVQCEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQ 484
RV+C + G VTF V+ GSN N AVL+ Y + D + +++ Q
Sbjct: 107140 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 107271
Score = 46.9 bits (96), Expect(4) = 3e-031
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -1 / +1
Query: 462 QWVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
+W+ M QSWGAVWK++ S L+ P ++R+T
Sbjct: 107287 KWLSMSQSWGAVWKLDVSSPLRAPLSLRVT 107376
Score = 37.3 bits (75), Expect(4) = 3e-031
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1 / +1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VASN IPA W G Y+S
Sbjct: 107377 SLESGKTVVASNVIPANWQPGAIYKS 107454
>gb|AC007234.3|AC007234 Genomic sequence for Arabidopsis thaliana BAC F1E22, complete sequence
Length = 92356
Score = 66.1 bits (138), Expect(4) = 6e-025
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
CP PC E HFD+SG A GALA+PGQ +LR AG +++ Y R
Sbjct: 27524 CPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGVLRVYYRR 27655
Score = 61.1 bits (127), Expect(4) = 3e-031
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1 / +3
Query: 729 CPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
C E VHFD+SGTAFGA+A GQ+SQLR G +QI Y +
Sbjct: 25356 CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKK 25472
Score = 56.5 bits (117), Expect(4) = 6e-025
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -1 / +3
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALV 349
G+++PMQ+ AVWKI+SGS L GPFNIRLT + +V
Sbjct: 27999 GEFIPMQEMRSAVWKISSGSPLTGPFNIRLTSAESHKVV 28115
Score = 47.3 bits (97), Expect(4) = 3e-031
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1 / +3
Query: 615 RVQCEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQ 484
RV+C + G VTF V+ GSN N AVL+ Y + D + +++ Q
Sbjct: 25587 RVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQ 25718
Score = 46.9 bits (96), Expect(4) = 3e-031
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -1 / +3
Query: 462 QWVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
+W+ M QSWGAVWK++ S L+ P ++R+T
Sbjct: 25734 KWLSMSQSWGAVWKLDVSSPLRAPLSLRVT 25823
Score = 45.5 bits (93), Expect(4) = 6e-025
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = -1 / +3
Query: 612 VQCEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
V+C + ++ F ++PG+NP Y++ ++EYE+ D L +++ G
Sbjct: 27864 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYIEIQPADG 28001
Score = 37.3 bits (75), Expect(4) = 3e-031
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1 / +3
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VASN IPA W G Y+S
Sbjct: 25824 SLESGKTVVASNVIPANWQPGAIYKS 25901
Score = 27.2 bits (53), Expect(4) = 6e-025
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1 / +3
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S + ++A N IPA W YRS
Sbjct: 28101 SHKVVLAYNVIPANWKPNETYRS 28169
>gb|AY619565.1| Arabidopsis thaliana beta-expansin 6 (EXPB6) gene, complete cds
Length = 2504
Score = 66.1 bits (138), Expect(4) = 5e-029
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
CP PC E HFD+SG A GALA+PGQ +LR AG +++ Y R
Sbjct: 1838 CPGGPCASEPAHFDLSGKAMGALARPGQGDRLRSAGVLRVYYIR 1969
Score = 57.0 bits (118), Expect(4) = 5e-029
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -1 / +1
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVAS 343
G ++PMQ+ AVWK+NSGS L GPFNIRLT + +V +
Sbjct: 2314 GTFIPMQEMRSAVWKVNSGSPLTGPFNIRLTSAESHNVVVA 2436
Score = 43.2 bits (88), Expect(4) = 5e-029
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -1 / +1
Query: 612 VQCEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
V+C + ++ F ++PG+NP Y++ ++EYE+ D L ++ G
Sbjct: 2179 VECLYRRTNIAFRMDPGANPYYISFVVEYENGDGDLAYTEIQPAGG 2316
Score = 27.6 bits (54), Expect(4) = 5e-029
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1 / +1
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S +VA N IPA W YRS
Sbjct: 2416 SHNVVVAYNVIPANWKPNETYRS 2484
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete
sequence. Sequence from clones T13E15, T14P1
Length = 87885
Score = 70.3 bits (147), Expect(4) = 5e-026
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = -1 / +3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTR 613
CP PC E VH D+SG A GALAKPGQ QLR AG I++ Y R
Sbjct: 66051 CPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKR 66182
Score = 55.1 bits (114), Expect(4) = 5e-026
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -1 / +2
Query: 465 GQWVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVAS 343
G ++ MQ+ AVWK+NSGS L+GPFNIRLT ++ +
Sbjct: 66680 GSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVA 66802
Score = 44.6 bits (91), Expect(4) = 5e-026
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = -1 / +2
Query: 606 CEWPGVDVTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQTQG 475
C + G ++ F ++ G+NP Y++ ++EYE+ D L +V++ G
Sbjct: 66551 CLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGG 66682
Score = 29.0 bits (57), Expect(4) = 5e-026
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1 / +2
Query: 366 SGRALVASNAIPAGWNAGVAYRS 298
S + +VA N IPA W +YRS
Sbjct: 66782 SHKVIVAYNVIPANWKPDESYRS 66850
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,338,891,682
Number of Sequences: 1013581
Number of extensions: 16876196
Number of successful extensions: 142966
Number of sequences better than 1.0e-020: 10
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 47027973014
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)